Wall clock time and date at job start Tue Mar 31 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76197 * 103.00197 * 2 1 4 4 C 1.35130 * 125.51886 * 180.02562 * 3 2 1 5 5 C 1.47055 * 105.89134 * 179.97438 * 4 3 2 6 6 C 1.47281 * 127.15006 * 179.97438 * 5 4 3 7 7 O 1.21654 * 119.99739 * 173.22528 * 6 5 4 8 8 N 1.34781 * 120.00401 * 353.21633 * 6 5 4 9 9 C 1.36963 * 119.99468 * 3.37041 * 8 6 5 10 10 H 1.08001 * 120.00079 * 308.66168 * 9 8 6 11 11 C 1.38971 * 119.99628 * 128.66930 * 9 8 6 12 12 N 1.31418 * 119.99672 * 171.38220 * 11 9 8 13 13 Si 1.86797 * 120.00079 * 351.37704 * 11 9 8 14 14 H 1.48499 * 109.46987 * 91.30071 * 13 11 9 15 15 H 1.48499 * 109.46817 * 211.29835 * 13 11 9 16 16 H 1.48496 * 109.47272 * 331.30103 * 13 11 9 17 17 C 1.46493 * 119.99966 * 183.36676 * 8 6 5 18 18 C 1.47202 * 109.47092 * 90.56406 * 17 8 6 19 19 N 8.44899 * 128.64156 * 24.19099 * 2 1 3 20 20 C 1.36443 * 105.69437 * 359.97438 * 5 4 3 21 21 C 1.50707 * 125.72749 * 180.02562 * 20 5 4 22 22 O 1.33964 * 108.55002 * 0.02562 * 20 5 4 23 23 H 1.08995 * 109.47431 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47451 * 300.00460 * 1 2 3 25 25 H 1.09006 * 109.47035 * 60.00339 * 1 2 3 26 26 H 1.08001 * 127.05283 * 359.70696 * 4 3 2 27 27 H 0.96999 * 119.99630 * 179.97438 * 12 11 9 28 28 H 1.09004 * 109.46841 * 210.55706 * 17 8 6 29 29 H 1.08998 * 109.47783 * 330.56547 * 17 8 6 30 30 H 1.08996 * 109.47311 * 179.97438 * 21 20 5 31 31 H 1.09005 * 109.46551 * 299.97495 * 21 20 5 32 32 H 1.09002 * 109.46907 * 59.97220 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4587 2.2343 -0.0005 5 6 3.2890 3.6950 -0.0009 6 6 4.3525 4.7140 -0.0010 7 8 4.0678 5.8901 -0.1256 8 7 5.6409 4.3434 0.1372 9 6 5.9676 3.0152 0.2084 10 1 5.4600 2.3712 0.9112 11 6 6.9522 2.4963 -0.6238 12 7 7.3855 1.2689 -0.4430 13 14 7.6597 3.5435 -1.9994 14 1 8.8532 4.2737 -1.5018 15 1 8.0515 2.6702 -3.1348 16 1 6.6369 4.5189 -2.4551 17 6 6.6919 5.3613 0.2112 18 6 6.9169 5.7328 1.6177 19 7 7.0899 6.0197 2.7042 20 6 1.9416 3.9101 -0.0012 21 6 1.2655 5.2569 -0.0022 22 8 1.3206 2.7231 -0.0004 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 4.3899 1.6873 0.0035 27 1 8.0725 0.9066 -1.0241 28 1 7.6143 4.9625 -0.2112 29 1 6.3851 6.2422 -0.3526 30 1 0.1841 5.1206 -0.0027 31 1 1.5613 5.8126 0.8877 32 1 1.5622 5.8117 -0.8923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597028996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:19 Heat of formation + Delta-G solvation = 13.009834 kcal Electronic energy + Delta-G solvation = -19536.131517 eV Core-core repulsion = 16397.426617 eV Total energy + Delta-G solvation = -3138.704900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.40182 -40.68131 -37.76592 -36.65363 -34.12427 -33.90729 -32.77032 -29.88416 -29.82414 -27.90692 -26.76684 -23.88313 -22.41379 -20.86706 -20.14594 -19.12375 -17.63114 -17.57945 -17.45916 -17.35669 -16.40452 -15.87094 -15.65783 -15.26132 -14.88102 -14.63832 -14.45279 -14.25813 -14.13756 -14.01481 -13.87039 -13.75467 -13.52542 -13.34728 -13.06100 -12.74605 -12.52098 -11.98937 -11.84660 -11.64647 -11.16426 -10.96686 -10.71641 -10.25377 -9.79492 -8.43123 -8.27635 -6.30253 0.20662 0.36041 1.01125 1.05420 1.27524 1.40025 1.47869 1.50841 1.71487 2.24129 2.38186 2.41214 2.71852 2.86785 3.19259 3.90673 4.01512 4.16186 4.25750 4.26711 4.31537 4.39992 4.53236 4.69477 4.81188 4.85304 4.87462 5.23759 5.38268 5.52776 5.93039 6.05063 6.15752 6.45004 6.92610 7.22456 7.58250 8.67191 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.007043 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.091832 B = 3974.675556 C = 4955.719642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.045 6.045 3 C -0.065 4.065 4 C -0.138 4.138 5 C -0.232 4.232 6 C 0.567 3.433 7 O -0.588 6.588 8 N -0.469 5.469 9 C -0.349 4.349 10 H 0.086 0.914 11 C 0.036 3.964 12 N -0.895 5.895 13 Si 0.915 3.085 14 H -0.241 1.241 15 H -0.284 1.284 16 H -0.249 1.249 17 C 0.186 3.814 18 C 0.228 3.772 19 N -0.474 5.474 20 C 0.062 3.938 21 C -0.059 4.059 22 O -0.171 6.171 23 H 0.138 0.862 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.173 0.827 27 H 0.282 0.718 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 0.166 -4.214 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.191 5.809 3 C -0.223 4.223 4 C -0.165 4.165 5 C -0.238 4.238 6 C 0.360 3.640 7 O -0.474 6.474 8 N -0.191 5.191 9 C -0.477 4.477 10 H 0.103 0.897 11 C -0.170 4.170 12 N -0.531 5.531 13 Si 0.738 3.262 14 H -0.165 1.165 15 H -0.210 1.210 16 H -0.172 1.172 17 C 0.061 3.939 18 C -0.091 4.091 19 N -0.154 5.154 20 C 0.005 3.995 21 C -0.115 4.115 22 O -0.069 6.069 23 H 0.156 0.844 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.190 0.810 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.161 0.839 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.091 -0.051 -2.716 11.418 hybrid contribution 0.242 0.734 -0.763 1.087 sum -10.848 0.684 -3.479 11.413 Atomic orbital electron populations 1.23707 0.91511 1.08873 1.06806 1.85920 1.09701 0.91274 1.93996 1.24329 0.90454 0.93120 1.14360 1.23751 0.97469 0.92842 1.02410 1.21056 0.93415 0.93810 1.15485 1.17648 0.82772 0.86761 0.76842 1.90631 1.83427 1.18545 1.54769 1.43352 1.03856 1.05808 1.66068 1.19026 1.24149 0.82778 1.21705 0.89687 1.26049 0.96244 0.96512 0.98201 1.69728 1.28286 1.16464 1.38595 0.86245 0.80431 0.79924 0.79639 1.16538 1.21047 1.17234 1.19550 0.94638 0.95566 0.84168 1.30143 0.91739 0.91347 0.95840 1.81065 1.10195 1.11224 1.12892 1.23327 0.90339 0.87177 0.98622 1.20476 1.00901 0.85208 1.04909 1.83837 1.36604 1.13366 1.73135 0.84423 0.89121 0.88971 0.80965 0.90800 0.86542 0.83949 0.87908 0.89263 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.45 113.37 1.18 -1.34 16 2 S -0.04 -1.29 22.74 -56.49 -1.28 -2.58 16 3 C -0.07 -2.39 7.32 67.10 0.49 -1.90 16 4 C -0.14 -5.92 9.15 23.87 0.22 -5.71 16 5 C -0.23 -9.84 6.16 -19.01 -0.12 -9.95 16 6 C 0.57 25.29 7.62 86.62 0.66 25.95 16 7 O -0.59 -25.95 15.21 -4.20 -0.06 -26.01 16 8 N -0.47 -21.00 1.93 -649.29 -1.26 -22.26 16 9 C -0.35 -17.18 7.02 84.07 0.59 -16.59 16 10 H 0.09 4.64 5.76 -2.91 -0.02 4.63 16 11 C 0.04 1.73 5.44 84.93 0.46 2.19 16 12 N -0.90 -46.73 13.96 21.67 0.30 -46.42 16 13 Si 0.91 36.52 24.96 68.60 1.71 38.23 16 14 H -0.24 -8.55 6.77 99.48 0.67 -7.88 16 15 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 17 C 0.19 7.13 4.64 84.58 0.39 7.52 16 18 C 0.23 9.31 15.77 89.43 1.41 10.72 16 19 N -0.47 -20.68 18.54 20.02 0.37 -20.31 16 20 C 0.06 2.19 7.37 25.27 0.19 2.38 16 21 C -0.06 -1.55 9.17 71.24 0.65 -0.90 16 22 O -0.17 -5.80 10.19 0.52 0.01 -5.79 16 23 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.17 8.37 5.07 -2.91 -0.01 8.35 16 27 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.12 4.23 4.03 -2.38 -0.01 4.22 16 29 H 0.14 4.74 7.36 -2.39 -0.02 4.72 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.10 2.54 7.99 -2.39 -0.02 2.52 16 Total: -1.00 -61.03 297.85 7.06 -53.97 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.14 Total: 18.79 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.13 Total: 12.38 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -0.58 Total: -88.99 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.06 Total: -31.80 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 1.71 Total: 38.23 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -1.28 Total: -2.58 kcal Total: -61.03 7.06 -53.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597028996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.976 kcal (2) G-P(sol) polarization free energy of solvation -61.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds