Wall clock time and date at job start Tue Mar 31 2020 01:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76199 * 100.00085 * 2 1 4 4 C 1.36616 * 125.61031 * 179.97438 * 3 2 1 5 5 C 1.39577 * 107.19816 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.62900 * 180.02562 * 5 4 3 7 7 C 1.38163 * 106.74956 * 0.02562 * 5 4 3 8 8 C 1.41472 * 126.02107 * 179.97438 * 7 5 4 9 9 O 1.21851 * 119.99988 * 6.14171 * 8 7 5 10 10 N 1.34772 * 119.99952 * 185.87421 * 8 7 5 11 11 C 1.36896 * 120.00485 * 176.66638 * 10 8 7 12 12 H 1.08006 * 119.99175 * 334.65201 * 11 10 8 13 13 C 1.38941 * 120.00490 * 154.64609 * 11 10 8 14 14 N 1.31438 * 120.00114 * 4.40573 * 13 11 10 15 15 Si 1.86805 * 120.00130 * 184.40604 * 13 11 10 16 16 H 1.48494 * 109.46910 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47101 * 120.00360 * 15 13 11 18 18 H 1.48503 * 109.46816 * 239.99936 * 15 13 11 19 19 C 1.46506 * 120.00279 * 356.66342 * 10 8 7 20 20 C 1.47197 * 109.47429 * 277.49185 * 19 10 8 21 21 N 5.00725 * 49.88813 * 324.07239 * 2 1 3 22 22 O 1.34178 * 125.61074 * 0.22631 * 3 2 1 23 23 H 1.09005 * 109.47299 * 59.99991 * 1 2 3 24 24 H 1.08999 * 109.47524 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47673 * 300.00238 * 1 2 3 26 26 H 1.08000 * 126.40194 * 359.97438 * 4 3 2 27 27 H 1.09005 * 109.47311 * 269.97943 * 6 5 4 28 28 H 1.09003 * 109.46923 * 29.97935 * 6 5 4 29 29 H 1.08996 * 109.47901 * 149.97965 * 6 5 4 30 30 H 0.97004 * 120.00134 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.46787 * 37.49031 * 19 10 8 32 32 H 1.09001 * 109.47444 * 157.48484 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3479 2.3257 0.0005 5 6 3.1437 3.7065 -0.0003 6 6 4.2086 4.7728 -0.0007 7 6 1.7767 3.9068 -0.0007 8 6 1.1194 5.1596 -0.0010 9 8 1.7655 6.1866 -0.1138 10 7 -0.2218 5.2170 0.1181 11 6 -0.8517 6.4304 0.1865 12 1 -0.3181 7.2960 0.5505 13 6 -2.1774 6.5486 -0.2124 14 7 -2.8528 5.4803 -0.5732 15 14 -2.9999 8.2257 -0.2358 16 1 -2.0314 9.2582 0.2126 17 1 -3.4518 8.5361 -1.6158 18 1 -4.1705 8.2156 0.6779 19 6 -1.0058 3.9806 0.1744 20 6 -1.2374 3.4839 -1.1918 21 7 -1.4161 3.1010 -2.2470 22 8 1.1773 2.6941 0.0043 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.3016 1.8189 0.0013 27 1 4.4649 5.0308 1.0269 28 1 5.0953 4.4006 -0.5138 29 1 3.8359 5.6584 -0.5153 30 1 -3.7782 5.5628 -0.8521 31 1 -0.4600 3.2300 0.7462 32 1 -1.9632 4.1790 0.6561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597031300.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:59 Heat of formation + Delta-G solvation = 10.855095 kcal Electronic energy + Delta-G solvation = -19986.563803 eV Core-core repulsion = 16847.765466 eV Total energy + Delta-G solvation = -3138.798337 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.64214 -40.46111 -37.84567 -36.38016 -35.05637 -33.82320 -31.47982 -30.05125 -29.33366 -28.88260 -26.65834 -24.06953 -22.49333 -20.80971 -19.80295 -19.14637 -18.35966 -18.20857 -17.25074 -16.89911 -16.06774 -15.94516 -15.43582 -15.01825 -14.88634 -14.57017 -14.52464 -14.20432 -13.99924 -13.81074 -13.71281 -13.54098 -13.31136 -13.17335 -12.96916 -12.59518 -12.55018 -12.16005 -12.09691 -11.92329 -11.19263 -11.02277 -10.73539 -10.26145 -10.01041 -8.45840 -8.39289 -6.12230 -0.10566 0.14540 0.87935 1.22399 1.42163 1.45443 1.56834 1.78161 2.08754 2.21378 2.34339 2.40808 2.97622 3.08363 3.50124 3.78850 3.96544 4.15376 4.21470 4.24221 4.43927 4.57301 4.79858 4.83342 4.85315 4.92546 4.98018 5.20687 5.36281 5.45403 5.69592 6.00585 6.31847 6.85883 6.94905 7.14983 7.70915 8.52893 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.006802 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.791453 B = 4115.450601 C = 5219.601252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S 0.014 5.986 3 C -0.034 4.034 4 C -0.183 4.183 5 C -0.087 4.087 6 C -0.087 4.087 7 C -0.094 4.094 8 C 0.519 3.481 9 O -0.589 6.589 10 N -0.442 5.442 11 C -0.328 4.328 12 H 0.094 0.906 13 C 0.003 3.997 14 N -0.895 5.895 15 Si 0.997 3.003 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.262 1.262 19 C 0.218 3.782 20 C 0.265 3.735 21 N -0.505 5.505 22 O -0.158 6.158 23 H 0.068 0.932 24 H 0.141 0.859 25 H 0.097 0.903 26 H 0.188 0.812 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.278 0.722 31 H 0.112 0.888 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -10.624 5.436 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.251 5.749 3 C -0.196 4.196 4 C -0.210 4.210 5 C -0.092 4.092 6 C -0.144 4.144 7 C -0.149 4.149 8 C 0.311 3.689 9 O -0.476 6.476 10 N -0.160 5.160 11 C -0.455 4.455 12 H 0.112 0.888 13 C -0.198 4.198 14 N -0.534 5.534 15 Si 0.820 3.180 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.186 1.186 19 C 0.092 3.908 20 C -0.052 4.052 21 N -0.186 5.186 22 O -0.056 6.056 23 H 0.087 0.913 24 H 0.159 0.841 25 H 0.116 0.884 26 H 0.205 0.795 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.174 -11.779 3.787 13.827 hybrid contribution -1.447 2.083 0.045 2.536 sum 4.727 -9.696 3.832 11.447 Atomic orbital electron populations 1.23752 0.93600 1.09076 1.06457 1.85510 1.07985 0.89064 1.92291 1.25412 0.90766 0.95354 1.08117 1.21581 0.98027 0.91845 1.09534 1.21055 0.92623 0.96072 0.99463 1.20402 0.95199 0.95488 1.03270 1.21266 0.93245 0.83492 1.16923 1.15736 0.82789 0.86504 0.83834 1.90677 1.65353 1.34465 1.57136 1.43749 1.04331 1.06341 1.61605 1.19836 0.95590 0.87544 1.42510 0.88845 1.26145 0.96851 1.02664 0.94180 1.69819 1.11441 1.29371 1.42787 0.84801 0.78167 0.77205 0.77822 1.19147 1.21164 1.18630 1.19287 1.00500 0.85430 0.85561 1.29604 0.89925 0.90311 0.95398 1.80909 1.12418 1.12902 1.12384 1.84539 1.34928 1.14113 1.72044 0.91267 0.84099 0.88390 0.79520 0.90035 0.88846 0.91970 0.91140 0.87123 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 10.08 113.37 1.14 -2.16 16 2 S 0.01 0.32 22.90 -56.49 -1.29 -0.98 16 3 C -0.03 -1.03 7.29 67.44 0.49 -0.54 16 4 C -0.18 -5.33 10.78 22.21 0.24 -5.09 16 5 C -0.09 -3.09 6.21 -19.56 -0.12 -3.21 16 6 C -0.09 -2.71 9.85 71.24 0.70 -2.01 16 7 C -0.09 -3.92 6.58 23.05 0.15 -3.77 16 8 C 0.52 25.64 7.33 85.04 0.62 26.26 16 9 O -0.59 -31.84 14.35 -4.83 -0.07 -31.91 16 10 N -0.44 -21.90 2.61 -655.61 -1.71 -23.61 16 11 C -0.33 -17.12 9.23 84.07 0.78 -16.35 16 12 H 0.09 5.09 7.47 -2.91 -0.02 5.07 16 13 C 0.00 0.16 5.35 84.92 0.45 0.61 16 14 N -0.90 -43.92 8.81 21.66 0.19 -43.73 16 15 Si 1.00 40.15 29.56 68.60 2.03 42.18 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 19 C 0.22 9.35 4.75 84.57 0.40 9.75 16 20 C 0.26 12.20 12.73 89.43 1.14 13.34 16 21 N -0.51 -24.55 18.54 20.01 0.37 -24.17 16 22 O -0.16 -5.81 5.76 -11.19 -0.06 -5.88 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.14 1.96 8.14 -2.40 -0.02 1.94 16 25 H 0.10 1.95 8.14 -2.40 -0.02 1.93 16 26 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 27 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.34 6.31 -2.39 -0.02 2.33 16 30 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 31 H 0.11 4.10 5.45 -2.39 -0.01 4.09 16 32 H 0.15 6.40 6.06 -2.39 -0.01 6.39 16 Total: -1.00 -63.82 296.38 6.62 -57.20 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.17 Total: 14.05 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.00 Total: 16.85 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -1.15 Total: -91.51 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.13 Total: -37.79 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.29 Total: -0.98 kcal Total: -63.82 6.62 -57.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031300.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.053 kcal (2) G-P(sol) polarization free energy of solvation -63.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds