Wall clock time and date at job start Tue Mar 31 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00113 * 2 1 4 4 C 1.50697 * 109.47356 * 180.02562 * 3 2 1 5 5 C 1.33851 * 122.44206 * 269.97918 * 4 3 2 6 6 S 1.70616 * 110.96859 * 179.74178 * 5 4 3 7 7 C 1.75831 * 91.56804 * 0.35486 * 6 5 4 8 8 C 1.46458 * 125.46372 * 179.91228 * 7 6 5 9 9 O 1.21746 * 120.00163 * 172.73944 * 8 7 6 10 10 N 1.34778 * 119.99786 * 352.73970 * 8 7 6 11 11 C 1.36878 * 120.00104 * 4.07343 * 10 8 7 12 12 H 1.08003 * 120.00153 * 308.16594 * 11 10 8 13 13 C 1.39007 * 120.00200 * 128.17218 * 11 10 8 14 14 N 1.31399 * 119.99999 * 3.96846 * 13 11 10 15 15 Si 1.86803 * 119.99895 * 183.97518 * 13 11 10 16 16 H 1.48497 * 109.47096 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47020 * 119.99838 * 15 13 11 18 18 H 1.48506 * 109.46943 * 239.99617 * 15 13 11 19 19 C 1.46502 * 120.00012 * 184.07187 * 10 8 7 20 20 C 1.47203 * 109.47276 * 84.61952 * 19 10 8 21 21 N 9.30613 * 148.10167 * 314.29032 * 2 1 3 22 22 C 1.36769 * 109.07517 * 359.64721 * 7 6 5 23 23 H 1.09006 * 109.47677 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47367 * 300.00516 * 1 2 3 25 25 H 1.09007 * 109.47310 * 59.99947 * 1 2 3 26 26 H 1.08998 * 109.47313 * 59.99539 * 3 2 1 27 27 H 1.09004 * 109.47239 * 299.99712 * 3 2 1 28 28 H 1.07999 * 124.51583 * 0.02562 * 5 4 3 29 29 H 0.96995 * 119.99729 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47357 * 204.62460 * 19 10 8 31 31 H 1.08997 * 109.46931 * 324.62475 * 19 10 8 32 32 H 1.07996 * 123.36318 * 180.28486 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2287 1.1300 1.1287 6 16 5.8949 0.9908 0.7886 7 6 5.5932 1.0222 -0.9434 8 6 6.6185 0.9412 -1.9860 9 8 6.2919 0.8389 -3.1544 10 7 7.9237 0.9800 -1.6521 11 6 8.2924 1.0109 -0.3343 12 1 7.8627 1.7465 0.3296 13 6 9.2200 0.0957 0.1496 14 7 9.8012 -0.7482 -0.6730 15 14 9.6403 0.0653 1.9695 16 1 8.8552 1.1089 2.6763 17 1 9.3100 -1.2689 2.5316 18 1 11.0903 0.3321 2.1472 19 6 8.9479 0.9890 -2.6996 20 6 9.1627 2.3693 -3.1640 21 7 9.3297 3.4339 -3.5200 22 6 4.2471 1.1283 -1.1608 23 1 -0.3635 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8078 1.1631 2.1227 29 1 10.4481 -1.3870 -0.3353 30 1 9.8804 0.5910 -2.2996 31 1 8.6183 0.3717 -3.5353 32 1 3.8055 1.1628 -2.1457 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597031729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:10 Heat of formation + Delta-G solvation = -15.805463 kcal Electronic energy + Delta-G solvation = -19044.576194 eV Core-core repulsion = 15904.621768 eV Total energy + Delta-G solvation = -3139.954425 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.03989 -38.25734 -36.54769 -35.71285 -34.82204 -31.95722 -30.19275 -28.07102 -27.11978 -25.63411 -25.20915 -23.00946 -19.91070 -18.81955 -18.05798 -17.32063 -16.29378 -16.12045 -15.74902 -15.27332 -15.18849 -14.91495 -14.37633 -13.86451 -13.52897 -13.08685 -12.70902 -12.57361 -12.33859 -12.10979 -11.92159 -11.78438 -11.66081 -11.45243 -11.42921 -11.21993 -11.11949 -10.64091 -10.48123 -10.04368 -9.61559 -9.24138 -8.96961 -8.16333 -7.88345 -7.69703 -6.80196 -4.71349 1.31353 2.39220 2.79522 2.83411 2.98616 3.03184 3.07190 3.34509 3.60065 3.82132 4.07172 4.27321 4.56668 4.63276 5.14434 5.17428 5.22223 5.35987 5.42938 5.56587 5.60869 5.70637 5.97550 6.13062 6.34189 6.57710 6.71203 6.91807 6.99075 7.03333 7.23619 7.55754 7.89955 8.33067 8.61647 9.02007 9.47403 10.22125 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.006225 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.566436 B = 4497.231756 C = 5607.224361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.125 3.875 4 C -0.131 4.131 5 C -0.297 4.297 6 S 0.302 5.698 7 C -0.228 4.228 8 C 0.559 3.441 9 O -0.579 6.579 10 N -0.439 5.439 11 C -0.351 4.351 12 H 0.102 0.898 13 C 0.069 3.931 14 N -0.846 5.846 15 Si 0.907 3.093 16 H -0.255 1.255 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.203 3.797 20 C 0.216 3.784 21 N -0.472 5.472 22 C -0.077 4.077 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.149 0.851 29 H 0.282 0.718 30 H 0.149 0.851 31 H 0.104 0.896 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 -0.390 6.207 10.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.047 3.953 4 C -0.144 4.144 5 C -0.434 4.434 6 S 0.578 5.422 7 C -0.349 4.349 8 C 0.349 3.651 9 O -0.464 6.464 10 N -0.160 5.160 11 C -0.484 4.484 12 H 0.119 0.881 13 C -0.143 4.143 14 N -0.479 5.479 15 Si 0.731 3.269 16 H -0.178 1.178 17 H -0.194 1.194 18 H -0.197 1.197 19 C 0.076 3.924 20 C -0.103 4.103 21 N -0.151 5.151 22 C -0.109 4.109 23 H 0.101 0.899 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.167 0.833 29 H 0.093 0.907 30 H 0.166 0.834 31 H 0.122 0.878 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.962 0.683 6.046 9.246 hybrid contribution -1.445 -0.172 0.216 1.471 sum -8.406 0.511 6.262 10.495 Atomic orbital electron populations 1.22714 0.81782 1.02482 0.99641 1.88017 1.18884 1.28174 1.95294 1.21019 0.89870 0.84391 0.99977 1.18143 0.94398 1.09389 0.92496 1.26422 1.06869 1.08158 1.01982 1.84448 0.96473 1.63001 0.98326 1.24469 0.97108 1.15290 0.98046 1.17378 0.82377 0.78530 0.86830 1.90706 1.81896 1.54613 1.19139 1.42988 1.02192 1.65153 1.05625 1.19387 1.27948 1.17278 0.83833 0.88124 1.25667 0.95206 0.93188 1.00225 1.69618 1.24681 1.17831 1.35747 0.86121 0.79375 0.79697 0.81741 1.17814 1.19367 1.19729 1.19167 0.97648 0.83039 0.92497 1.30570 0.91733 0.96120 0.91831 1.80935 1.10607 1.12733 1.10860 1.20329 0.91388 1.00374 0.98853 0.89864 0.94420 0.94245 0.93100 0.92859 0.83325 0.90733 0.83398 0.87814 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.82 10.69 -35.23 -0.38 -6.20 16 3 C 0.13 1.79 6.18 36.00 0.22 2.02 16 4 C -0.13 -2.26 5.41 -106.45 -0.58 -2.84 16 5 C -0.30 -4.92 10.67 29.19 0.31 -4.61 16 6 S 0.30 5.58 18.40 -107.50 -1.98 3.60 16 7 C -0.23 -4.87 6.30 -36.80 -0.23 -5.10 16 8 C 0.56 13.32 7.54 -12.95 -0.10 13.22 16 9 O -0.58 -14.87 16.49 5.15 0.08 -14.79 16 10 N -0.44 -10.12 2.44 -119.50 -0.29 -10.41 16 11 C -0.35 -7.82 6.72 -15.01 -0.10 -7.92 16 12 H 0.10 2.18 5.50 -33.79 -0.19 2.00 16 13 C 0.07 1.49 5.34 -17.45 -0.09 1.40 16 14 N -0.85 -18.93 11.25 55.50 0.62 -18.30 16 15 Si 0.91 16.81 29.56 -169.99 -5.02 11.78 16 16 H -0.25 -4.51 7.11 56.52 0.40 -4.11 16 17 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 19 C 0.20 4.31 5.35 -6.83 -0.04 4.27 16 20 C 0.22 4.69 15.71 -20.80 -0.33 4.37 16 21 N -0.47 -10.75 18.53 42.11 0.78 -9.97 16 22 C -0.08 -1.50 9.81 -40.40 -0.40 -1.90 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.28 5.89 8.31 -40.82 -0.34 5.55 16 30 H 0.15 3.12 5.83 -51.93 -0.30 2.82 16 31 H 0.10 2.13 7.53 -51.93 -0.39 1.74 16 32 H 0.14 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 302.66 15.07 4.56 4.56 Total: -1.00 -27.27 302.66 -4.80 -32.07 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -2.97 Total: 3.32 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.21 Total: 4.34 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 1.11 Total: -38.69 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.29 Total: -20.99 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.02 Total: 11.78 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.98 Total: 3.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.27 -4.80 -32.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.267 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds