Wall clock time and date at job start Tue Mar 31 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00113 * 2 1 4 4 C 1.50697 * 109.47356 * 180.02562 * 3 2 1 5 5 C 1.33851 * 122.44206 * 269.97918 * 4 3 2 6 6 S 1.70616 * 110.96859 * 179.74178 * 5 4 3 7 7 C 1.75831 * 91.56804 * 0.35486 * 6 5 4 8 8 C 1.46458 * 125.46372 * 179.91228 * 7 6 5 9 9 O 1.21746 * 120.00163 * 172.73944 * 8 7 6 10 10 N 1.34778 * 119.99786 * 352.73970 * 8 7 6 11 11 C 1.36878 * 120.00104 * 4.07343 * 10 8 7 12 12 H 1.08003 * 120.00153 * 308.16594 * 11 10 8 13 13 C 1.39007 * 120.00200 * 128.17218 * 11 10 8 14 14 N 1.31399 * 119.99999 * 3.96846 * 13 11 10 15 15 Si 1.86803 * 119.99895 * 183.97518 * 13 11 10 16 16 H 1.48497 * 109.47096 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47020 * 119.99838 * 15 13 11 18 18 H 1.48506 * 109.46943 * 239.99617 * 15 13 11 19 19 C 1.46502 * 120.00012 * 184.07187 * 10 8 7 20 20 C 1.47203 * 109.47276 * 84.61952 * 19 10 8 21 21 N 9.30613 * 148.10167 * 314.29032 * 2 1 3 22 22 C 1.36769 * 109.07517 * 359.64721 * 7 6 5 23 23 H 1.09006 * 109.47677 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47367 * 300.00516 * 1 2 3 25 25 H 1.09007 * 109.47310 * 59.99947 * 1 2 3 26 26 H 1.08998 * 109.47313 * 59.99539 * 3 2 1 27 27 H 1.09004 * 109.47239 * 299.99712 * 3 2 1 28 28 H 1.07999 * 124.51583 * 0.02562 * 5 4 3 29 29 H 0.96995 * 119.99729 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47357 * 204.62460 * 19 10 8 31 31 H 1.08997 * 109.46931 * 324.62475 * 19 10 8 32 32 H 1.07996 * 123.36318 * 180.28486 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2287 1.1300 1.1287 6 16 5.8949 0.9908 0.7886 7 6 5.5932 1.0222 -0.9434 8 6 6.6185 0.9412 -1.9860 9 8 6.2919 0.8389 -3.1544 10 7 7.9237 0.9800 -1.6521 11 6 8.2924 1.0109 -0.3343 12 1 7.8627 1.7465 0.3296 13 6 9.2200 0.0957 0.1496 14 7 9.8012 -0.7482 -0.6730 15 14 9.6403 0.0653 1.9695 16 1 8.8552 1.1089 2.6763 17 1 9.3100 -1.2689 2.5316 18 1 11.0903 0.3321 2.1472 19 6 8.9479 0.9890 -2.6996 20 6 9.1627 2.3693 -3.1640 21 7 9.3297 3.4339 -3.5200 22 6 4.2471 1.1283 -1.1608 23 1 -0.3635 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8078 1.1631 2.1227 29 1 10.4481 -1.3870 -0.3353 30 1 9.8804 0.5910 -2.2996 31 1 8.6183 0.3717 -3.5353 32 1 3.8055 1.1628 -2.1457 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597031729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:09 Heat of formation + Delta-G solvation = -31.672018 kcal Electronic energy + Delta-G solvation = -19045.264219 eV Core-core repulsion = 15904.621768 eV Total energy + Delta-G solvation = -3140.642451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75175 -39.50914 -37.91473 -37.39385 -36.58993 -33.67231 -31.66483 -29.54212 -28.37060 -27.05323 -26.49825 -24.52562 -21.52685 -20.37024 -19.59296 -18.94929 -17.71154 -17.30196 -17.21434 -16.86235 -16.61472 -16.12256 -15.82595 -15.56224 -15.01002 -14.81559 -14.16777 -13.99763 -13.79160 -13.73234 -13.47668 -13.18916 -13.07657 -12.93127 -12.84555 -12.71852 -12.31258 -12.17762 -11.95450 -11.54921 -10.90792 -10.71978 -10.57055 -9.80086 -9.45486 -9.17387 -8.45726 -6.43426 -0.18553 0.91091 1.37769 1.39113 1.47505 1.53277 1.64182 1.67103 1.81265 2.26608 2.40383 2.89001 2.93078 3.25155 3.39595 4.09583 4.12844 4.33463 4.41286 4.50803 4.59022 4.61012 4.64734 4.74744 4.88543 4.98242 5.12403 5.34164 5.51991 5.58172 5.82414 6.21437 6.29315 6.54736 6.92313 7.26041 7.73026 8.58593 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.006225 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.566436 B = 4497.231756 C = 5607.224361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.416 6.416 3 C 0.127 3.873 4 C -0.142 4.142 5 C -0.275 4.275 6 S 0.314 5.686 7 C -0.274 4.274 8 C 0.546 3.454 9 O -0.614 6.614 10 N -0.445 5.445 11 C -0.368 4.368 12 H 0.107 0.893 13 C 0.040 3.960 14 N -0.871 5.871 15 Si 0.954 3.046 16 H -0.239 1.239 17 H -0.267 1.267 18 H -0.271 1.271 19 C 0.207 3.793 20 C 0.227 3.773 21 N -0.489 5.489 22 C -0.074 4.074 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.184 0.816 29 H 0.286 0.714 30 H 0.152 0.848 31 H 0.106 0.894 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 -0.234 8.553 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.336 6.336 3 C 0.049 3.951 4 C -0.154 4.154 5 C -0.412 4.412 6 S 0.588 5.412 7 C -0.394 4.394 8 C 0.337 3.663 9 O -0.502 6.502 10 N -0.164 5.164 11 C -0.500 4.500 12 H 0.124 0.876 13 C -0.169 4.169 14 N -0.504 5.504 15 Si 0.775 3.225 16 H -0.162 1.162 17 H -0.192 1.192 18 H -0.197 1.197 19 C 0.080 3.920 20 C -0.091 4.091 21 N -0.169 5.169 22 C -0.108 4.108 23 H 0.112 0.888 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.202 0.798 29 H 0.097 0.903 30 H 0.169 0.831 31 H 0.124 0.876 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.294 0.847 8.395 11.831 hybrid contribution -1.139 -0.240 -0.503 1.268 sum -9.433 0.608 7.891 12.314 Atomic orbital electron populations 1.22939 0.79451 1.03724 1.01044 1.87953 1.21468 1.28597 1.95595 1.21056 0.87692 0.84603 1.01742 1.18411 0.96396 1.09020 0.91616 1.26662 1.05328 1.05803 1.03428 1.84126 0.97917 1.63016 0.96134 1.24431 0.97190 1.18455 0.99328 1.17840 0.83128 0.78220 0.87118 1.90655 1.82493 1.56456 1.20562 1.43184 1.02262 1.64602 1.06317 1.19647 1.28666 1.17987 0.83702 0.87615 1.26298 0.94662 0.92566 1.03419 1.69668 1.25120 1.18365 1.37262 0.85409 0.79267 0.80064 0.77759 1.16197 1.19214 1.19653 1.19191 0.97569 0.82713 0.92478 1.30630 0.91133 0.96029 0.91303 1.80927 1.11292 1.13160 1.11476 1.20531 0.91158 0.99353 0.99727 0.88830 0.92533 0.93270 0.90441 0.92014 0.79828 0.90306 0.83095 0.87582 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -11.55 10.69 -148.98 -1.59 -13.14 16 3 C 0.13 3.26 6.18 71.23 0.44 3.70 16 4 C -0.14 -4.60 5.41 -21.05 -0.11 -4.71 16 5 C -0.27 -8.25 10.67 66.82 0.71 -7.54 16 6 S 0.31 11.08 18.40 -56.49 -1.04 10.04 16 7 C -0.27 -11.72 6.30 24.07 0.15 -11.57 16 8 C 0.55 26.63 7.54 86.38 0.65 27.28 16 9 O -0.61 -32.68 16.49 -4.50 -0.07 -32.75 16 10 N -0.44 -20.80 2.44 -650.17 -1.59 -22.39 16 11 C -0.37 -16.32 6.72 84.09 0.56 -15.75 16 12 H 0.11 4.51 5.50 -14.80 -0.08 4.43 16 13 C 0.04 1.69 5.34 84.94 0.45 2.15 16 14 N -0.87 -38.87 11.25 21.67 0.24 -38.63 16 15 Si 0.95 33.01 29.56 68.60 2.03 35.04 16 16 H -0.24 -7.62 7.11 99.48 0.71 -6.92 16 17 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 18 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 19 C 0.21 8.96 5.35 84.57 0.45 9.42 16 20 C 0.23 10.01 15.71 89.46 1.41 11.42 16 21 N -0.49 -22.43 18.53 19.99 0.37 -22.06 16 22 C -0.07 -2.86 9.81 21.74 0.21 -2.64 16 23 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 27 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 28 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.29 11.89 8.31 -92.71 -0.77 11.12 16 30 H 0.15 6.48 5.83 -2.39 -0.01 6.46 16 31 H 0.11 4.52 7.53 -2.39 -0.02 4.50 16 32 H 0.13 5.18 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -58.25 302.66 5.62 -52.63 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.09 Total: 17.83 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.18 Total: 13.43 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -0.97 Total: -83.08 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.67 Total: -45.89 kcal Atomic # 14 Polarization: 33.01 SS G_CDS: 2.03 Total: 35.04 kcal Atomic # 16 Polarization: 11.08 SS G_CDS: -1.04 Total: 10.04 kcal Total: -58.25 5.62 -52.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.954 kcal (2) G-P(sol) polarization free energy of solvation -58.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds