Wall clock time and date at job start Tue Mar 31 2020 01:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 C 1.34509 * 125.79283 * 119.99971 * 4 2 1 6 6 C 1.41381 * 106.84162 * 180.02562 * 5 4 2 7 7 C 1.34513 * 106.83970 * 0.02562 * 6 5 4 8 8 O 1.34302 * 108.42135 * 359.73406 * 7 6 5 9 9 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 10 10 N 1.29947 * 126.28665 * 60.02372 * 9 2 1 11 11 O 1.21301 * 110.25634 * 179.97438 * 10 9 2 12 12 C 1.33647 * 109.80464 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.54626 * 179.97438 * 12 11 10 14 14 S 1.80998 * 109.46948 * 269.96898 * 13 12 11 15 15 C 1.76197 * 100.00060 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00059 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00044 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99762 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47300 * 59.99743 * 19 17 15 21 21 H 1.48502 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47236 * 299.99503 * 19 17 15 23 23 N 1.31133 * 106.89967 * 359.75891 * 12 11 10 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.08001 * 126.57856 * 0.03440 * 5 4 2 28 28 H 1.07999 * 126.57679 * 180.02562 * 6 5 4 29 29 H 1.07999 * 125.78621 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47130 * 29.97170 * 13 12 11 31 31 H 1.09003 * 109.46873 * 149.97283 * 13 12 11 32 32 H 0.96999 * 119.99600 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.8089 -0.1719 -2.1878 6 6 3.0377 -1.1846 -3.1474 7 6 2.3868 -2.2812 -2.7195 8 8 1.7842 -1.9897 -1.5552 9 6 2.0324 -0.7104 1.2304 10 7 1.7954 -1.9460 1.5557 11 8 2.3422 -2.2165 2.6041 12 6 2.9996 -1.1465 3.0613 13 6 3.8063 -1.0639 4.3315 14 16 2.7357 -0.5382 5.6930 15 6 3.9028 -0.5260 7.0129 16 1 4.9317 -0.7965 6.8265 17 6 3.5001 -0.1686 8.2922 18 7 2.2463 0.1616 8.5193 19 14 4.7374 -0.1563 9.6916 20 1 5.8290 0.8005 9.3788 21 1 4.0608 0.2584 10.9468 22 1 5.3059 -1.5176 9.8617 23 7 2.8124 -0.1836 2.1910 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 3.1855 0.8399 -2.2175 28 1 3.6229 -1.0949 -4.0507 29 1 2.3573 -3.2354 -3.2244 30 1 4.2282 -2.0430 4.5583 31 1 4.6125 -0.3416 4.2036 32 1 1.9648 0.4109 9.4134 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598680185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:47 Heat of formation + Delta-G solvation = 75.608957 kcal Electronic energy + Delta-G solvation = -18486.511624 eV Core-core repulsion = 15350.521225 eV Total energy + Delta-G solvation = -3135.990399 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.27108 -42.71147 -36.47957 -34.50153 -33.12309 -32.57987 -32.14205 -28.79074 -28.42790 -25.63936 -25.06965 -23.27159 -21.84834 -21.80818 -20.02917 -18.06661 -17.86213 -17.34605 -17.00474 -16.12443 -15.12763 -14.92016 -14.73647 -14.41989 -14.21195 -13.61874 -13.19588 -12.98268 -12.95206 -12.83304 -12.62333 -12.06087 -11.81712 -11.54717 -11.32303 -11.17462 -11.10695 -10.90905 -10.71925 -10.24065 -10.06982 -9.42131 -9.18229 -8.67643 -8.55741 -6.74597 -6.36322 -4.11070 1.35340 1.55767 2.31132 2.47010 2.88357 3.05154 3.18335 3.21199 3.23859 3.41477 3.70512 4.06559 4.15064 4.51297 4.77932 4.83594 4.94611 5.00082 5.01356 5.19312 5.36278 5.53313 5.57627 5.64663 5.72582 5.74593 5.84178 5.92639 6.04074 6.13015 6.26886 6.32244 6.99523 7.47655 8.22112 8.45294 9.09556 10.71646 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.045937 B = 0.003272 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.377736 B = 8555.415203 C = 8722.302244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.088 3.912 3 H 0.130 0.870 4 C -0.005 4.005 5 C -0.201 4.201 6 C -0.217 4.217 7 C -0.040 4.040 8 O -0.162 6.162 9 C 0.163 3.837 10 N -0.376 5.376 11 O 0.080 5.920 12 C 0.227 3.773 13 C -0.043 4.043 14 S -0.081 6.081 15 C -0.527 4.527 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.868 5.868 19 Si 0.925 3.075 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.272 1.272 23 N -0.478 5.478 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.202 0.798 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -1.747 -19.147 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.069 3.931 3 H 0.148 0.852 4 C -0.056 4.056 5 C -0.220 4.220 6 C -0.236 4.236 7 C -0.108 4.108 8 O -0.057 6.057 9 C -0.111 4.111 10 N -0.084 5.084 11 O 0.021 5.979 12 C 0.007 3.993 13 C -0.192 4.192 14 S 0.145 5.855 15 C -0.675 4.675 16 H 0.098 0.902 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.750 3.250 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.197 1.197 23 N -0.212 5.212 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.168 0.832 28 H 0.166 0.834 29 H 0.219 0.781 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.738 -1.769 -19.486 19.643 hybrid contribution 2.293 -0.236 0.849 2.456 sum 0.555 -2.005 -18.637 18.753 Atomic orbital electron populations 1.21874 0.91353 1.03817 1.03347 1.17967 0.96922 0.97018 0.81229 0.85203 1.22010 1.02366 0.83043 0.98221 1.21613 1.03051 1.01533 0.95778 1.21813 1.05726 0.93581 1.02483 1.24091 0.99025 1.00878 0.86784 1.84090 1.59287 1.27520 1.34771 1.25362 0.97994 0.89217 0.98500 1.74584 1.17221 1.17403 0.99153 1.85315 1.47737 1.37758 1.27100 1.28201 0.93282 0.81018 0.96820 1.21985 1.00043 1.06828 0.90323 1.85184 1.13895 1.88214 0.98219 1.22672 0.96674 1.54409 0.93769 0.90195 1.25024 0.96070 0.94135 0.98254 1.69987 1.15501 1.42070 1.22669 0.86126 0.80219 0.78886 0.79747 1.19729 1.20751 1.19716 1.71907 1.17658 1.28679 1.02986 0.90815 0.91273 0.90751 0.83167 0.83385 0.78146 0.87906 0.87085 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.16 37.16 0.34 -1.30 16 2 C 0.09 1.15 3.26 -92.92 -0.30 0.85 16 3 H 0.13 1.45 8.10 -51.93 -0.42 1.03 16 4 C -0.01 -0.07 5.81 -35.62 -0.21 -0.27 16 5 C -0.20 -2.26 10.78 -39.71 -0.43 -2.69 16 6 C -0.22 -2.19 10.91 -39.70 -0.43 -2.62 16 7 C -0.04 -0.41 12.09 29.42 0.36 -0.05 16 8 O -0.16 -2.19 10.65 5.71 0.06 -2.13 16 9 C 0.16 2.75 6.71 -156.38 -1.05 1.70 16 10 N -0.38 -6.84 12.16 30.90 0.38 -6.46 16 11 O 0.08 1.50 11.31 18.09 0.20 1.71 16 12 C 0.23 4.30 7.77 -13.06 -0.10 4.20 16 13 C -0.04 -0.83 6.30 36.01 0.23 -0.60 16 14 S -0.08 -2.01 21.42 -107.50 -2.30 -4.32 16 15 C -0.53 -14.12 9.50 30.94 0.29 -13.82 16 16 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 17 C 0.08 2.03 5.49 -17.43 -0.10 1.93 16 18 N -0.87 -24.88 13.22 55.49 0.73 -24.15 16 19 Si 0.92 20.48 29.55 -169.99 -5.02 15.46 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 N -0.48 -8.93 11.55 -9.86 -0.11 -9.05 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 31 H 0.11 2.03 8.14 -51.91 -0.42 1.61 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -31.43 308.06 -6.17 -37.60 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.35 Total: -0.62 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.40 Total: -12.69 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 1.00 Total: -39.65 kcal Atomic # 8 Polarization: -0.68 SS G_CDS: 0.27 Total: -0.42 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.30 Total: -4.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.43 -6.17 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598680185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.211 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds