Wall clock time and date at job start Tue Mar 31 2020 01:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 C 1.34509 * 125.79283 * 119.99971 * 4 2 1 6 6 C 1.41381 * 106.84162 * 180.02562 * 5 4 2 7 7 C 1.34513 * 106.83970 * 0.02562 * 6 5 4 8 8 O 1.34302 * 108.42135 * 359.73406 * 7 6 5 9 9 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 10 10 N 1.29947 * 126.28665 * 60.02372 * 9 2 1 11 11 O 1.21301 * 110.25634 * 179.97438 * 10 9 2 12 12 C 1.33647 * 109.80464 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.54626 * 179.97438 * 12 11 10 14 14 S 1.80998 * 109.46948 * 269.96898 * 13 12 11 15 15 C 1.76197 * 100.00060 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00059 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00044 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99762 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47300 * 59.99743 * 19 17 15 21 21 H 1.48502 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47236 * 299.99503 * 19 17 15 23 23 N 1.31133 * 106.89967 * 359.75891 * 12 11 10 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.08001 * 126.57856 * 0.03440 * 5 4 2 28 28 H 1.07999 * 126.57679 * 180.02562 * 6 5 4 29 29 H 1.07999 * 125.78621 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47130 * 29.97170 * 13 12 11 31 31 H 1.09003 * 109.46873 * 149.97283 * 13 12 11 32 32 H 0.96999 * 119.99600 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.8089 -0.1719 -2.1878 6 6 3.0377 -1.1846 -3.1474 7 6 2.3868 -2.2812 -2.7195 8 8 1.7842 -1.9897 -1.5552 9 6 2.0324 -0.7104 1.2304 10 7 1.7954 -1.9460 1.5557 11 8 2.3422 -2.2165 2.6041 12 6 2.9996 -1.1465 3.0613 13 6 3.8063 -1.0639 4.3315 14 16 2.7357 -0.5382 5.6930 15 6 3.9028 -0.5260 7.0129 16 1 4.9317 -0.7965 6.8265 17 6 3.5001 -0.1686 8.2922 18 7 2.2463 0.1616 8.5193 19 14 4.7374 -0.1563 9.6916 20 1 5.8290 0.8005 9.3788 21 1 4.0608 0.2584 10.9468 22 1 5.3059 -1.5176 9.8617 23 7 2.8124 -0.1836 2.1910 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 3.1855 0.8399 -2.2175 28 1 3.6229 -1.0949 -4.0507 29 1 2.3573 -3.2354 -3.2244 30 1 4.2282 -2.0430 4.5583 31 1 4.6125 -0.3416 4.2036 32 1 1.9648 0.4109 9.4134 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598680185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:46 Heat of formation + Delta-G solvation = 55.296026 kcal Electronic energy + Delta-G solvation = -18487.392458 eV Core-core repulsion = 15350.521225 eV Total energy + Delta-G solvation = -3136.871234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.69602 -43.56306 -37.72225 -35.80256 -34.61499 -34.03586 -33.39207 -30.00524 -29.58380 -27.68780 -26.18380 -24.61598 -22.97502 -22.68889 -21.06039 -19.86042 -19.29990 -18.60913 -18.15246 -17.05722 -16.88968 -16.42774 -16.05132 -15.88711 -15.44161 -14.81250 -14.69288 -14.34444 -13.87008 -13.75046 -13.49405 -13.45211 -13.19640 -12.91850 -12.86119 -12.77778 -12.58819 -12.42623 -12.15298 -11.90592 -11.13601 -11.03170 -10.89118 -10.40774 -9.51247 -8.76180 -8.38413 -6.18237 -0.13465 0.64706 0.95767 1.38471 1.47031 1.52732 1.59927 1.64780 1.78822 2.06193 2.23241 2.46279 2.90213 2.98752 3.23969 3.53632 3.76985 3.93068 4.06503 4.12624 4.20641 4.29154 4.42491 4.59765 4.68391 4.71424 4.83974 4.89224 4.97353 5.05231 5.17463 5.42682 5.56551 6.16536 6.18586 7.02057 7.04442 8.70845 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.045937 B = 0.003272 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.377736 B = 8555.415203 C = 8722.302244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.148 0.852 4 C -0.034 4.034 5 C -0.197 4.197 6 C -0.224 4.224 7 C -0.043 4.043 8 O -0.189 6.189 9 C 0.169 3.831 10 N -0.388 5.388 11 O 0.070 5.930 12 C 0.220 3.780 13 C -0.019 4.019 14 S -0.146 6.146 15 C -0.539 4.539 16 H 0.091 0.909 17 C 0.019 3.981 18 N -0.909 5.909 19 Si 0.998 3.002 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.261 1.261 23 N -0.488 5.488 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.169 0.831 28 H 0.175 0.825 29 H 0.234 0.766 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -1.676 -20.411 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.067 3.933 3 H 0.166 0.834 4 C -0.085 4.085 5 C -0.217 4.217 6 C -0.242 4.242 7 C -0.110 4.110 8 O -0.085 6.085 9 C -0.104 4.104 10 N -0.098 5.098 11 O 0.014 5.986 12 C 0.000 4.000 13 C -0.168 4.168 14 S 0.080 5.920 15 C -0.687 4.687 16 H 0.109 0.891 17 C -0.187 4.187 18 N -0.545 5.545 19 Si 0.820 3.180 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.186 1.186 23 N -0.223 5.223 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.186 0.814 28 H 0.192 0.808 29 H 0.250 0.750 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.320 -1.711 -20.756 20.829 hybrid contribution 1.841 -0.282 1.051 2.139 sum 1.521 -1.993 -19.705 19.863 Atomic orbital electron populations 1.21853 0.90309 1.03141 1.04499 1.18240 0.97787 0.97491 0.79825 0.83439 1.22026 1.04223 0.83393 0.98856 1.21980 1.01731 1.02580 0.95364 1.22194 1.05851 0.93030 1.03168 1.24873 0.97977 1.02391 0.85786 1.84068 1.60247 1.27992 1.36187 1.26109 0.96587 0.88808 0.98917 1.74585 1.17744 1.18303 0.99170 1.85303 1.47933 1.37869 1.27504 1.28097 0.93627 0.81409 0.96908 1.21787 0.98841 1.08051 0.88098 1.85233 1.16866 1.88920 1.01002 1.23074 0.97238 1.54064 0.94327 0.89099 1.26077 0.97983 0.93496 1.01110 1.70133 1.17696 1.43379 1.23342 0.84999 0.77613 0.79429 0.75988 1.18677 1.20543 1.18584 1.71921 1.18126 1.28791 1.03467 0.91189 0.92821 0.88010 0.81395 0.80800 0.74983 0.85837 0.85826 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.16 71.98 0.66 -2.39 16 2 C 0.09 2.16 3.26 -12.29 -0.04 2.12 16 3 H 0.15 3.07 8.10 -2.39 -0.02 3.05 16 4 C -0.03 -0.85 5.81 24.83 0.14 -0.70 16 5 C -0.20 -4.04 10.78 22.19 0.24 -3.80 16 6 C -0.22 -3.94 10.91 22.19 0.24 -3.70 16 7 C -0.04 -0.80 12.09 66.97 0.81 0.01 16 8 O -0.19 -4.92 10.65 -2.48 -0.03 -4.95 16 9 C 0.17 5.67 6.71 138.46 0.93 6.60 16 10 N -0.39 -14.17 12.16 -60.31 -0.73 -14.90 16 11 O 0.07 2.65 11.31 74.79 0.85 3.50 16 12 C 0.22 8.29 7.77 88.38 0.69 8.97 16 13 C -0.02 -0.71 6.30 71.24 0.45 -0.27 16 14 S -0.15 -7.41 21.42 -56.49 -1.21 -8.62 16 15 C -0.54 -28.81 9.50 67.95 0.65 -28.17 16 16 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 17 C 0.02 1.01 5.49 84.86 0.47 1.48 16 18 N -0.91 -52.89 13.22 21.65 0.29 -52.61 16 19 Si 1.00 41.52 29.55 68.60 2.03 43.54 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 21 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 N -0.49 -18.05 11.55 -303.16 -3.50 -21.55 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 27 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.23 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.12 4.17 8.14 -2.40 -0.02 4.15 16 31 H 0.12 4.40 8.14 -2.39 -0.02 4.38 16 32 H 0.27 14.83 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -68.03 308.06 4.06 -63.97 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.14 Total: 11.47 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 5.23 Total: -19.85 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -3.95 Total: -89.06 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: 0.82 Total: -1.45 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.21 Total: -8.62 kcal Total: -68.03 4.06 -63.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598680185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.268 kcal (2) G-P(sol) polarization free energy of solvation -68.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds