Wall clock time and date at job start Tue Mar 31 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38460 * 119.83925 * 2 1 4 4 C 1.37828 * 120.24856 * 179.97438 * 3 2 1 5 5 C 1.39744 * 119.91605 * 0.27699 * 4 3 2 6 6 C 1.47597 * 120.16244 * 179.74612 * 5 4 3 7 7 O 1.21597 * 120.00033 * 124.73174 * 6 5 4 8 8 N 1.34779 * 119.99823 * 304.73977 * 6 5 4 9 9 C 1.36885 * 119.99999 * 184.68302 * 8 6 5 10 10 H 1.08003 * 119.99691 * 319.16401 * 9 8 6 11 11 C 1.39033 * 120.00164 * 139.16921 * 9 8 6 12 12 N 1.31373 * 120.00053 * 161.19000 * 11 9 8 13 13 Si 1.86803 * 119.99891 * 341.18283 * 11 9 8 14 14 H 1.48502 * 109.46852 * 92.01636 * 13 11 9 15 15 H 1.48494 * 109.47077 * 212.01694 * 13 11 9 16 16 H 1.48496 * 109.47299 * 332.01839 * 13 11 9 17 17 C 1.46499 * 119.99896 * 4.68385 * 8 6 5 18 18 C 1.47194 * 109.47332 * 94.20996 * 17 8 6 19 19 N 5.79231 * 134.70949 * 344.10091 * 2 1 3 20 20 C 1.39837 * 119.68016 * 359.49411 * 5 4 3 21 21 F 1.35101 * 120.12470 * 180.27287 * 20 5 4 22 22 C 1.38408 * 119.83702 * 180.02562 * 2 1 3 23 23 F 1.35101 * 119.95891 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47625 * 89.99813 * 1 2 3 25 25 H 1.09000 * 109.47142 * 210.00066 * 1 2 3 26 26 H 1.09006 * 109.47053 * 329.99649 * 1 2 3 27 27 H 1.07997 * 119.87819 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.04292 * 179.97438 * 4 3 2 29 29 H 0.97003 * 119.99772 * 179.97438 * 12 11 9 30 30 H 1.09003 * 109.47087 * 214.20810 * 17 8 6 31 31 H 1.09001 * 109.47440 * 334.20741 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2010 0.0000 4 6 3.5741 1.2109 0.0005 5 6 4.2797 0.0047 -0.0048 6 6 5.7556 0.0089 -0.0099 7 8 6.3683 -0.5914 0.8520 8 7 6.4243 0.6782 -0.9698 9 6 7.7897 0.6039 -1.0315 10 1 8.3736 0.6325 -0.1234 11 6 8.4248 0.4917 -2.2632 12 7 9.7002 0.7869 -2.3739 13 14 7.4648 -0.0791 -3.7606 14 1 6.9183 1.1010 -4.4774 15 1 8.3653 -0.8356 -4.6671 16 1 6.3476 -0.9563 -3.3275 17 6 5.6897 1.4854 -1.9471 18 6 5.6291 2.8813 -1.4843 19 7 5.5819 3.9590 -1.1277 20 6 3.5807 -1.2064 0.0001 21 9 4.2538 -2.3778 0.0006 22 6 2.1956 -1.2006 -0.0005 23 9 1.5159 -2.3682 -0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6513 2.1336 0.0004 28 1 4.1081 2.1497 0.0001 29 1 10.1434 0.7082 -3.2332 30 1 6.1996 1.4435 -2.9096 31 1 4.6781 1.0940 -2.0547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601027074.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:49 Heat of formation + Delta-G solvation = -47.660124 kcal Electronic energy + Delta-G solvation = -21682.083704 eV Core-core repulsion = 17986.907570 eV Total energy + Delta-G solvation = -3695.176134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.38594 -48.42352 -39.96582 -38.21356 -36.44324 -34.85580 -33.04606 -32.17897 -30.42316 -28.04526 -27.88728 -25.12171 -22.87120 -22.49121 -20.04160 -18.77305 -17.78781 -17.27048 -17.01632 -16.56783 -16.40655 -15.89251 -15.67692 -14.88359 -14.79610 -14.38482 -14.09082 -13.78153 -13.72215 -13.59532 -13.17311 -12.99825 -12.65470 -12.57302 -12.33866 -12.05909 -11.95910 -11.77426 -11.60306 -11.43046 -11.06026 -10.57169 -10.15176 -9.45220 -9.04088 -8.80054 -8.76120 -8.21075 -6.62341 -4.28242 0.68998 0.88579 2.79071 2.83875 2.96318 3.04992 3.12222 3.14543 3.39298 3.71154 3.91414 4.11102 4.29610 4.31728 4.52764 4.62146 4.75491 4.89642 4.97237 5.21822 5.29887 5.32778 5.46122 5.55132 5.70320 5.79812 5.87451 6.01234 6.09020 6.64917 7.21925 7.81344 7.94348 8.15247 8.61413 8.96821 9.31721 10.48102 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.006804 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.461952 B = 4114.019123 C = 4654.128513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.104 4.104 4 C -0.083 4.083 5 C -0.123 4.123 6 C 0.514 3.486 7 O -0.525 6.525 8 N -0.449 5.449 9 C -0.325 4.325 10 H 0.114 0.886 11 C 0.067 3.933 12 N -0.847 5.847 13 Si 0.860 3.140 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.254 1.254 17 C 0.172 3.828 18 C 0.208 3.792 19 N -0.432 5.432 20 C 0.113 3.887 21 F -0.112 7.112 22 C 0.060 3.940 23 F -0.127 7.127 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.280 0.720 30 H 0.112 0.888 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 -0.486 -1.377 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.122 4.122 4 C -0.102 4.102 5 C -0.127 4.127 6 C 0.301 3.699 7 O -0.403 6.403 8 N -0.171 5.171 9 C -0.451 4.451 10 H 0.131 0.869 11 C -0.142 4.142 12 N -0.481 5.481 13 Si 0.686 3.314 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.177 1.177 17 C 0.045 3.955 18 C -0.111 4.111 19 N -0.111 5.111 20 C 0.092 3.908 21 F -0.090 7.090 22 C 0.040 3.960 23 F -0.105 7.105 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.100 0.695 -0.511 17.122 hybrid contribution -0.143 -1.076 -1.086 1.535 sum -17.244 -0.380 -1.596 17.321 Atomic orbital electron populations 1.20763 0.89321 1.03720 1.03219 1.19894 0.97331 0.90902 1.00729 1.20881 0.93481 0.97358 1.00511 1.21410 0.94209 0.97102 0.97473 1.20342 0.96399 0.92012 1.03972 1.17870 0.84721 0.81678 0.85584 1.90740 1.68305 1.44568 1.36646 1.43461 1.07116 1.39238 1.27301 1.19077 0.77621 1.52175 0.96238 0.86862 1.25419 0.95570 0.94960 0.98207 1.69676 1.10466 1.41389 1.26522 0.87200 0.81404 0.79984 0.82829 1.19259 1.20161 1.17738 1.19658 0.99974 0.80540 0.95336 1.29786 0.92505 0.95164 0.93666 1.81099 1.09215 1.12473 1.08340 1.17528 0.87850 0.82020 1.03391 1.91588 1.79920 1.44276 1.93225 1.17303 0.87685 0.82394 1.08637 1.91501 1.79338 1.45535 1.94165 0.90263 0.90885 0.90448 0.83931 0.84349 0.90950 0.87077 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.82 36.00 0.35 -0.52 16 2 C -0.09 -0.97 5.89 -104.48 -0.62 -1.59 16 3 C -0.10 -1.13 9.67 -39.65 -0.38 -1.51 16 4 C -0.08 -1.17 7.73 -39.17 -0.30 -1.47 16 5 C -0.12 -2.18 4.68 -104.92 -0.49 -2.67 16 6 C 0.51 11.57 6.83 -12.44 -0.08 11.49 16 7 O -0.52 -13.91 16.79 5.28 0.09 -13.83 16 8 N -0.45 -10.11 2.09 -119.10 -0.25 -10.36 16 9 C -0.32 -8.56 9.30 -15.00 -0.14 -8.70 16 10 H 0.11 3.39 7.93 -52.48 -0.42 2.97 16 11 C 0.07 1.72 5.36 -17.45 -0.09 1.63 16 12 N -0.85 -22.93 13.95 55.50 0.77 -22.16 16 13 Si 0.86 18.12 25.08 -169.99 -4.26 13.86 16 14 H -0.27 -5.00 6.58 56.52 0.37 -4.62 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.25 -5.21 7.11 56.52 0.40 -4.81 16 17 C 0.17 3.10 4.36 -6.83 -0.03 3.07 16 18 C 0.21 3.78 13.25 -20.76 -0.28 3.50 16 19 N -0.43 -8.26 18.54 42.16 0.78 -7.48 16 20 C 0.11 1.96 7.28 -38.88 -0.28 1.67 16 21 F -0.11 -2.20 16.60 2.25 0.04 -2.16 16 22 C 0.06 0.85 7.24 -39.42 -0.29 0.56 16 23 F -0.13 -1.78 16.37 2.25 0.04 -1.75 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.57 7.62 -51.93 -0.40 0.17 16 26 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.14 2.00 5.44 -52.48 -0.29 1.72 16 29 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.11 2.04 3.15 -51.93 -0.16 1.87 16 31 H 0.11 1.61 5.82 -51.93 -0.30 1.30 16 LS Contribution 284.18 15.07 4.28 4.28 Total: -1.00 -30.44 284.18 -3.13 -33.58 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -1.99 Total: 0.55 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -2.63 Total: 5.46 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 1.31 Total: -40.00 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.07 Total: -3.91 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.26 Total: 13.86 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.44 -3.13 -33.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027074.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.082 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds