Wall clock time and date at job start Tue Mar 31 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38460 * 119.83925 * 2 1 4 4 C 1.37828 * 120.24856 * 179.97438 * 3 2 1 5 5 C 1.39744 * 119.91605 * 0.27699 * 4 3 2 6 6 C 1.47597 * 120.16244 * 179.74612 * 5 4 3 7 7 O 1.21597 * 120.00033 * 124.73174 * 6 5 4 8 8 N 1.34779 * 119.99823 * 304.73977 * 6 5 4 9 9 C 1.36885 * 119.99999 * 184.68302 * 8 6 5 10 10 H 1.08003 * 119.99691 * 319.16401 * 9 8 6 11 11 C 1.39033 * 120.00164 * 139.16921 * 9 8 6 12 12 N 1.31373 * 120.00053 * 161.19000 * 11 9 8 13 13 Si 1.86803 * 119.99891 * 341.18283 * 11 9 8 14 14 H 1.48502 * 109.46852 * 92.01636 * 13 11 9 15 15 H 1.48494 * 109.47077 * 212.01694 * 13 11 9 16 16 H 1.48496 * 109.47299 * 332.01839 * 13 11 9 17 17 C 1.46499 * 119.99896 * 4.68385 * 8 6 5 18 18 C 1.47194 * 109.47332 * 94.20996 * 17 8 6 19 19 N 5.79231 * 134.70949 * 344.10091 * 2 1 3 20 20 C 1.39837 * 119.68016 * 359.49411 * 5 4 3 21 21 F 1.35101 * 120.12470 * 180.27287 * 20 5 4 22 22 C 1.38408 * 119.83702 * 180.02562 * 2 1 3 23 23 F 1.35101 * 119.95891 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47625 * 89.99813 * 1 2 3 25 25 H 1.09000 * 109.47142 * 210.00066 * 1 2 3 26 26 H 1.09006 * 109.47053 * 329.99649 * 1 2 3 27 27 H 1.07997 * 119.87819 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.04292 * 179.97438 * 4 3 2 29 29 H 0.97003 * 119.99772 * 179.97438 * 12 11 9 30 30 H 1.09003 * 109.47087 * 214.20810 * 17 8 6 31 31 H 1.09001 * 109.47440 * 334.20741 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2010 0.0000 4 6 3.5741 1.2109 0.0005 5 6 4.2797 0.0047 -0.0048 6 6 5.7556 0.0089 -0.0099 7 8 6.3683 -0.5914 0.8520 8 7 6.4243 0.6782 -0.9698 9 6 7.7897 0.6039 -1.0315 10 1 8.3736 0.6325 -0.1234 11 6 8.4248 0.4917 -2.2632 12 7 9.7002 0.7869 -2.3739 13 14 7.4648 -0.0791 -3.7606 14 1 6.9183 1.1010 -4.4774 15 1 8.3653 -0.8356 -4.6671 16 1 6.3476 -0.9563 -3.3275 17 6 5.6897 1.4854 -1.9471 18 6 5.6291 2.8813 -1.4843 19 7 5.5819 3.9590 -1.1277 20 6 3.5807 -1.2064 0.0001 21 9 4.2538 -2.3778 0.0006 22 6 2.1956 -1.2006 -0.0005 23 9 1.5159 -2.3682 -0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6513 2.1336 0.0004 28 1 4.1081 2.1497 0.0001 29 1 10.1434 0.7082 -3.2332 30 1 6.1996 1.4435 -2.9096 31 1 4.6781 1.0940 -2.0547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601027074.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:49 Heat of formation + Delta-G solvation = -67.686405 kcal Electronic energy + Delta-G solvation = -21682.952108 eV Core-core repulsion = 17986.907570 eV Total energy + Delta-G solvation = -3696.044539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.59905 -49.67945 -41.46951 -39.52523 -38.06994 -36.58669 -34.49758 -33.70056 -31.54336 -29.57053 -29.09587 -26.77048 -23.99874 -23.67331 -21.57683 -20.48068 -19.14992 -18.57704 -18.48116 -17.98135 -17.76723 -17.35438 -17.12482 -16.23144 -16.08409 -15.75134 -15.63988 -15.22317 -15.18164 -14.65851 -14.43930 -14.27463 -14.16558 -14.02880 -13.62610 -13.42493 -13.21450 -12.88784 -12.74584 -12.73351 -12.59003 -12.22915 -11.86085 -11.24334 -10.79841 -10.12665 -9.91961 -9.90722 -8.58193 -6.33190 -0.44890 -0.22138 1.14773 1.29970 1.33408 1.44022 1.59626 1.62477 2.12932 2.15586 2.40782 2.69575 2.72285 3.02635 3.23096 3.34544 3.59087 3.66798 3.87986 3.93149 4.09786 4.40399 4.42295 4.67416 4.84486 4.87611 4.98554 5.16617 5.21399 5.36484 5.61898 5.91634 6.26661 6.37648 6.68882 6.99903 7.48252 8.57555 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.006804 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.461952 B = 4114.019123 C = 4654.128513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.060 4.060 3 C -0.078 4.078 4 C -0.077 4.077 5 C -0.146 4.146 6 C 0.512 3.488 7 O -0.584 6.584 8 N -0.458 5.458 9 C -0.346 4.346 10 H 0.051 0.949 11 C 0.021 3.979 12 N -0.897 5.897 13 Si 0.921 3.079 14 H -0.215 1.215 15 H -0.278 1.278 16 H -0.245 1.245 17 C 0.173 3.827 18 C 0.219 3.781 19 N -0.446 5.446 20 C 0.086 3.914 21 F -0.138 7.138 22 C 0.058 3.942 23 F -0.127 7.127 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.192 0.808 28 H 0.136 0.864 29 H 0.286 0.714 30 H 0.116 0.884 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.470 0.792 -3.295 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.061 4.061 3 C -0.095 4.095 4 C -0.096 4.096 5 C -0.150 4.150 6 C 0.302 3.698 7 O -0.466 6.466 8 N -0.179 5.179 9 C -0.474 4.474 10 H 0.069 0.931 11 C -0.183 4.183 12 N -0.533 5.533 13 Si 0.742 3.258 14 H -0.139 1.139 15 H -0.204 1.204 16 H -0.168 1.168 17 C 0.048 3.952 18 C -0.099 4.099 19 N -0.124 5.124 20 C 0.065 3.935 21 F -0.117 7.117 22 C 0.038 3.962 23 F -0.106 7.106 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.125 0.875 27 H 0.210 0.790 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.002 2.013 -2.438 22.228 hybrid contribution 1.278 -1.455 -0.333 1.965 sum -20.724 0.558 -2.771 20.916 Atomic orbital electron populations 1.20966 0.85990 1.05241 1.04988 1.20412 0.99394 0.89431 0.96838 1.21351 0.91765 0.99150 0.97259 1.21439 0.95705 0.95220 0.97209 1.19877 0.93023 0.93922 1.08193 1.18635 0.87014 0.80061 0.84089 1.90686 1.70376 1.46691 1.38808 1.43441 1.05995 1.40255 1.28203 1.18598 0.79598 1.54431 0.94746 0.93118 1.26232 0.96572 0.94007 1.01532 1.69795 1.12678 1.42821 1.27965 0.86235 0.80065 0.81199 0.78317 1.13927 1.20411 1.16826 1.19883 1.01721 0.79811 0.93825 1.29682 0.91992 0.94971 0.93271 1.81112 1.09856 1.12944 1.08535 1.17870 0.89223 0.80998 1.05370 1.91513 1.80760 1.45659 1.93730 1.17442 0.86399 0.83553 1.08813 1.91503 1.78972 1.45943 1.94181 0.88091 0.90952 0.87476 0.79050 0.84616 0.90408 0.86677 0.82492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.82 71.23 0.70 -0.34 16 2 C -0.06 -1.01 5.89 -19.77 -0.12 -1.13 16 3 C -0.08 -1.23 9.67 22.23 0.21 -1.02 16 4 C -0.08 -1.92 7.73 22.54 0.17 -1.75 16 5 C -0.15 -5.08 4.68 -20.06 -0.09 -5.17 16 6 C 0.51 24.02 6.83 86.71 0.59 24.61 16 7 O -0.58 -33.39 16.79 -4.02 -0.07 -33.46 16 8 N -0.46 -21.14 2.09 -648.99 -1.36 -22.49 16 9 C -0.35 -19.46 9.30 84.10 0.78 -18.68 16 10 H 0.05 3.39 7.93 -2.91 -0.02 3.36 16 11 C 0.02 1.13 5.36 84.95 0.46 1.58 16 12 N -0.90 -50.92 13.95 21.68 0.30 -50.62 16 13 Si 0.92 36.57 25.08 68.60 1.72 38.29 16 14 H -0.22 -6.86 6.58 99.48 0.65 -6.20 16 15 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 17 C 0.17 5.91 4.36 84.57 0.37 6.28 16 18 C 0.22 7.59 13.25 89.44 1.19 8.78 16 19 N -0.45 -16.26 18.54 20.01 0.37 -15.89 16 20 C 0.09 2.93 7.28 22.72 0.17 3.10 16 21 F -0.14 -5.62 16.60 44.97 0.75 -4.88 16 22 C 0.06 1.48 7.24 22.38 0.16 1.64 16 23 F -0.13 -3.29 16.37 44.97 0.74 -2.56 16 24 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.74 7.62 -2.39 -0.02 0.73 16 26 H 0.11 0.44 8.08 -2.38 -0.02 0.42 16 27 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 28 H 0.14 3.54 5.44 -2.91 -0.02 3.52 16 29 H 0.29 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.12 3.87 3.15 -2.39 -0.01 3.86 16 31 H 0.16 3.92 5.82 -2.39 -0.01 3.91 16 Total: -1.00 -75.51 284.18 8.20 -67.31 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.16 Total: 6.40 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 4.59 Total: 17.90 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -0.68 Total: -89.00 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.07 Total: -33.46 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 1.48 Total: -7.43 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 1.72 Total: 38.29 kcal Total: -75.51 8.20 -67.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027074.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.380 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds