Wall clock time and date at job start Tue Mar 31 2020 01:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47232 * 300.00076 * 3 2 1 6 6 H 1.48496 * 109.47364 * 60.00057 * 3 2 1 7 7 C 1.37878 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47204 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.30712 * 120.00046 * 119.99592 * 12 11 10 14 14 N 1.35060 * 124.97018 * 180.02562 * 13 12 11 15 15 H 0.97006 * 122.17813 * 359.97438 * 14 13 12 16 16 C 1.38489 * 115.63130 * 179.97438 * 14 13 12 17 17 C 1.40158 * 127.96619 * 180.28152 * 16 14 13 18 18 C 1.37620 * 120.66007 * 180.23588 * 17 16 14 19 19 C 1.38597 * 120.25242 * 359.46433 * 18 17 16 20 20 F 1.35099 * 120.13700 * 180.30292 * 19 18 17 21 21 C 1.38020 * 119.72790 * 0.27774 * 19 18 17 22 22 C 1.38642 * 113.21783 * 0.02562 * 16 14 13 23 23 S 1.75561 * 124.96834 * 359.97438 * 13 12 11 24 24 H 0.97011 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46927 * 60.00224 * 9 7 2 26 26 H 1.08996 * 109.46872 * 300.00158 * 9 7 2 27 27 H 1.09001 * 109.46863 * 60.00376 * 10 9 7 28 28 H 1.08995 * 109.46994 * 300.00516 * 10 9 7 29 29 H 1.08997 * 109.47176 * 59.99967 * 11 10 9 30 30 H 1.09006 * 109.47322 * 300.00617 * 11 10 9 31 31 H 1.08003 * 119.66826 * 359.97438 * 17 16 14 32 32 H 1.08002 * 119.87736 * 179.74688 * 18 17 16 33 33 H 1.08002 * 119.83170 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 7 2.4320 -6.1006 -0.0031 13 6 2.4266 -6.9657 0.9768 14 7 3.2567 -8.0262 1.0778 15 1 3.9312 -8.2199 0.4081 16 6 3.0822 -8.8189 2.1999 17 6 3.7972 -9.9683 2.5634 18 6 3.4915 -10.6485 3.7200 19 6 2.4761 -10.1968 4.5481 20 9 2.1820 -10.8629 5.6861 21 6 1.7668 -9.0633 4.2056 22 6 2.0672 -8.3723 3.0321 23 16 1.3399 -6.9181 2.3549 24 1 -0.4850 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8724 -3.6048 0.8878 28 1 2.8711 -3.6039 -0.8922 29 1 0.8531 -5.0442 -0.8922 30 1 0.8537 -5.0455 0.8877 31 1 4.5933 -10.3261 1.9272 32 1 4.0480 -11.5351 3.9858 33 1 0.9749 -8.7101 4.8495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603287886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:22 Heat of formation + Delta-G solvation = -1.555863 kcal Electronic energy + Delta-G solvation = -17886.119964 eV Core-core repulsion = 14759.156237 eV Total energy + Delta-G solvation = -3126.963727 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.15116 -40.56679 -37.55077 -35.46260 -33.31597 -31.61411 -31.28251 -29.19128 -26.73056 -24.92183 -23.53298 -22.47185 -21.37949 -20.20032 -18.80703 -17.94821 -17.31044 -16.47751 -16.19736 -15.96603 -15.74978 -15.15201 -14.58084 -14.45019 -14.28620 -14.05644 -13.55949 -13.44010 -12.79740 -12.33483 -12.18671 -11.87407 -11.63695 -11.11203 -10.90206 -10.87384 -10.57404 -10.50389 -9.92848 -9.73420 -9.44234 -9.15052 -9.07477 -8.61985 -8.35102 -7.42599 -5.99889 -4.02077 0.60578 0.64073 1.07745 1.53719 2.08585 2.50101 3.05402 3.31753 3.39053 3.43770 3.92256 4.13162 4.46081 4.48058 4.64461 4.78678 5.01355 5.26818 5.36064 5.41485 5.53162 5.59984 5.68865 5.89752 6.11167 6.16595 6.45165 6.63672 6.71723 6.92553 7.08302 7.66239 7.72422 7.80721 7.99539 8.42462 9.04602 9.61931 11.11544 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035881 B = 0.002940 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.170330 B = 9520.322240 C = 9804.040234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.065 3.935 12 N -0.536 5.536 13 C 0.350 3.650 14 N -0.624 5.624 15 H 0.424 0.576 16 C 0.157 3.843 17 C -0.108 4.108 18 C -0.110 4.110 19 C 0.078 3.922 20 F -0.136 7.136 21 C -0.082 4.082 22 C -0.150 4.150 23 S 0.037 5.963 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -23.793 7.362 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.065 4.065 12 N -0.265 5.265 13 C -0.038 4.038 14 N -0.250 5.250 15 H 0.264 0.736 16 C 0.049 3.951 17 C -0.131 4.131 18 C -0.132 4.132 19 C 0.055 3.945 20 F -0.115 7.115 21 C -0.106 4.106 22 C -0.268 4.268 23 S 0.279 5.721 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.819 -22.421 6.866 23.939 hybrid contribution 1.160 -0.010 0.101 1.165 sum 5.979 -22.431 6.967 24.237 Atomic orbital electron populations 1.69974 1.06047 1.26510 1.50949 1.25023 0.94865 0.99280 0.95321 0.86528 0.80135 0.83728 0.77579 1.19731 1.20989 1.20989 1.21253 0.93096 0.90902 1.50445 0.92602 1.19098 0.93938 0.91160 0.97375 1.21660 0.99281 0.91749 1.01153 1.22375 0.93064 0.89964 1.01102 1.71653 1.27589 1.06620 1.20593 1.23893 0.93115 0.91958 0.94854 1.41108 1.36512 1.24221 1.23181 0.73588 1.17843 0.96373 0.93600 0.87273 1.20208 1.01101 0.93641 0.98160 1.20807 0.97361 1.01030 0.93964 1.17164 0.98621 0.93528 0.85199 1.91515 1.92801 1.79451 1.47697 1.20308 1.00693 0.94118 0.95515 1.21740 1.02384 1.02543 1.00151 1.85851 1.40915 1.25530 1.19851 0.93037 0.96352 0.96502 0.93362 0.92302 0.89412 0.93779 0.84116 0.83641 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.18 5.48 -26.73 -0.15 -2.33 16 11 C 0.06 1.20 6.33 -4.05 -0.03 1.18 16 12 N -0.54 -9.11 10.64 -61.76 -0.66 -9.77 16 13 C 0.35 5.07 8.28 -90.18 -0.75 4.32 16 14 N -0.62 -6.94 5.64 -11.26 -0.06 -7.00 16 15 H 0.42 3.75 8.96 -40.82 -0.37 3.38 16 16 C 0.16 1.59 6.94 -83.99 -0.58 1.00 16 17 C -0.11 -0.77 10.06 -39.09 -0.39 -1.16 16 18 C -0.11 -0.77 10.00 -39.67 -0.40 -1.16 16 19 C 0.08 0.68 7.30 -39.53 -0.29 0.39 16 20 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 21 C -0.08 -0.79 10.04 -39.21 -0.39 -1.18 16 22 C -0.15 -1.69 6.42 -38.98 -0.25 -1.94 16 23 S 0.04 0.50 21.29 -107.50 -2.29 -1.79 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.04 0.80 6.15 -51.93 -0.32 0.49 16 31 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -31.89 305.41 -10.03 -41.93 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.61 Total: -3.05 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.77 Total: -14.20 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.02 Total: -43.17 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -2.29 Total: -1.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.89 -10.03 -41.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603287886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.371 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds