Wall clock time and date at job start Tue Mar 31 2020 01:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47232 * 300.00076 * 3 2 1 6 6 H 1.48496 * 109.47364 * 60.00057 * 3 2 1 7 7 C 1.37878 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47204 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.30712 * 120.00046 * 119.99592 * 12 11 10 14 14 N 1.35060 * 124.97018 * 180.02562 * 13 12 11 15 15 H 0.97006 * 122.17813 * 359.97438 * 14 13 12 16 16 C 1.38489 * 115.63130 * 179.97438 * 14 13 12 17 17 C 1.40158 * 127.96619 * 180.28152 * 16 14 13 18 18 C 1.37620 * 120.66007 * 180.23588 * 17 16 14 19 19 C 1.38597 * 120.25242 * 359.46433 * 18 17 16 20 20 F 1.35099 * 120.13700 * 180.30292 * 19 18 17 21 21 C 1.38020 * 119.72790 * 0.27774 * 19 18 17 22 22 C 1.38642 * 113.21783 * 0.02562 * 16 14 13 23 23 S 1.75561 * 124.96834 * 359.97438 * 13 12 11 24 24 H 0.97011 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46927 * 60.00224 * 9 7 2 26 26 H 1.08996 * 109.46872 * 300.00158 * 9 7 2 27 27 H 1.09001 * 109.46863 * 60.00376 * 10 9 7 28 28 H 1.08995 * 109.46994 * 300.00516 * 10 9 7 29 29 H 1.08997 * 109.47176 * 59.99967 * 11 10 9 30 30 H 1.09006 * 109.47322 * 300.00617 * 11 10 9 31 31 H 1.08003 * 119.66826 * 359.97438 * 17 16 14 32 32 H 1.08002 * 119.87736 * 179.74688 * 18 17 16 33 33 H 1.08002 * 119.83170 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 7 2.4320 -6.1006 -0.0031 13 6 2.4266 -6.9657 0.9768 14 7 3.2567 -8.0262 1.0778 15 1 3.9312 -8.2199 0.4081 16 6 3.0822 -8.8189 2.1999 17 6 3.7972 -9.9683 2.5634 18 6 3.4915 -10.6485 3.7200 19 6 2.4761 -10.1968 4.5481 20 9 2.1820 -10.8629 5.6861 21 6 1.7668 -9.0633 4.2056 22 6 2.0672 -8.3723 3.0321 23 16 1.3399 -6.9181 2.3549 24 1 -0.4850 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8724 -3.6048 0.8878 28 1 2.8711 -3.6039 -0.8922 29 1 0.8531 -5.0442 -0.8922 30 1 0.8537 -5.0455 0.8877 31 1 4.5933 -10.3261 1.9272 32 1 4.0480 -11.5351 3.9858 33 1 0.9749 -8.7101 4.8495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603287886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:22 Heat of formation + Delta-G solvation = -21.040577 kcal Electronic energy + Delta-G solvation = -17886.964884 eV Core-core repulsion = 14759.156237 eV Total energy + Delta-G solvation = -3127.808648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87381 -41.40425 -38.54495 -36.86426 -35.18622 -33.06029 -32.31117 -30.19489 -28.42744 -26.02729 -24.95043 -23.49892 -22.44944 -21.97624 -19.70067 -18.80221 -18.43630 -18.29232 -17.22126 -16.75071 -16.72925 -16.52728 -16.13802 -15.71326 -15.46575 -15.03992 -14.47951 -14.26719 -14.16960 -14.08731 -13.51203 -13.17309 -13.07836 -12.77345 -12.65852 -12.43887 -11.92767 -11.74023 -11.54828 -11.41815 -11.24625 -10.65277 -10.58165 -10.43168 -9.44630 -8.48500 -8.21600 -6.33468 -0.15243 -0.07095 0.01555 0.58279 0.97816 1.39087 1.39504 1.52924 1.55320 2.35488 2.39992 3.10886 3.22650 3.39202 3.64571 3.89958 3.99971 4.10879 4.19193 4.33668 4.53445 4.58925 4.75349 4.80221 4.92047 5.02366 5.05320 5.13257 5.30752 5.47115 5.66640 5.73690 5.80635 5.95830 6.21452 6.59544 6.82048 7.35604 8.90063 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035881 B = 0.002940 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.170330 B = 9520.322240 C = 9804.040234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.084 4.084 11 C 0.077 3.923 12 N -0.571 5.571 13 C 0.362 3.638 14 N -0.612 5.612 15 H 0.436 0.564 16 C 0.143 3.857 17 C -0.089 4.089 18 C -0.096 4.096 19 C 0.076 3.924 20 F -0.139 7.139 21 C -0.091 4.091 22 C -0.164 4.164 23 S 0.002 5.998 24 H 0.265 0.735 25 H -0.002 1.002 26 H -0.005 1.005 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.794 -25.675 8.061 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.054 4.054 12 N -0.302 5.302 13 C -0.026 4.026 14 N -0.239 5.239 15 H 0.278 0.722 16 C 0.036 3.964 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.053 3.947 20 F -0.117 7.117 21 C -0.115 4.115 22 C -0.282 4.282 23 S 0.243 5.757 24 H 0.074 0.926 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.197 0.803 32 H 0.199 0.801 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.966 -24.370 7.597 26.460 hybrid contribution 0.505 0.336 0.060 0.609 sum 7.471 -24.034 7.657 26.308 Atomic orbital electron populations 1.70098 1.07744 1.27826 1.51490 1.25985 0.95832 1.03369 0.94580 0.85370 0.78962 0.78594 0.77952 1.18768 1.20115 1.20152 1.21661 0.93442 0.92310 1.50830 0.92465 1.18969 0.94240 0.92634 0.95222 1.21359 0.98121 0.92168 1.00557 1.22006 0.92938 0.89414 1.01000 1.71615 1.28583 1.07596 1.22413 1.24005 0.92818 0.91802 0.93951 1.41089 1.35864 1.23181 1.23789 0.72173 1.18172 0.96884 0.94609 0.86752 1.20645 1.00700 0.91638 0.98196 1.21238 0.96136 1.01483 0.92811 1.17350 0.98885 0.93098 0.85320 1.91517 1.92888 1.79365 1.47960 1.20407 1.01273 0.94613 0.95225 1.21697 1.03285 1.01833 1.01400 1.85949 1.41495 1.27925 1.20306 0.92633 0.98380 0.98710 0.93932 0.92639 0.89767 0.93993 0.80331 0.80101 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.08 -3.79 5.48 30.59 0.17 -3.62 16 11 C 0.08 2.99 6.33 86.38 0.55 3.53 16 12 N -0.57 -19.70 10.64 -349.32 -3.72 -23.42 16 13 C 0.36 10.46 8.28 180.20 1.49 11.95 16 14 N -0.61 -12.64 5.64 -189.54 -1.07 -13.71 16 15 H 0.44 6.77 8.96 -92.70 -0.83 5.94 16 16 C 0.14 2.54 6.94 38.65 0.27 2.81 16 17 C -0.09 -0.89 10.06 22.59 0.23 -0.66 16 18 C -0.10 -0.90 10.00 22.21 0.22 -0.68 16 19 C 0.08 1.13 7.30 22.30 0.16 1.29 16 20 F -0.14 -2.25 17.27 44.97 0.78 -1.47 16 21 C -0.09 -1.64 10.04 22.51 0.23 -1.41 16 22 C -0.16 -3.54 6.42 22.66 0.15 -3.39 16 23 S 0.00 0.05 21.29 -56.49 -1.20 -1.15 16 24 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.04 1.61 6.15 -2.38 -0.01 1.60 16 31 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 32 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -70.50 305.41 1.71 -68.78 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 0.31 Total: 1.08 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.30 Total: -20.03 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -4.50 Total: -94.46 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.20 Total: -1.15 kcal Total: -70.50 1.71 -68.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603287886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.742 kcal (2) G-P(sol) polarization free energy of solvation -70.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds