Wall clock time and date at job start Tue Mar 31 2020 02:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 C 1.38042 * 120.00089 * 239.99665 * 12 2 1 15 15 N 1.28853 * 124.81514 * 179.97438 * 14 12 2 16 16 C 1.34891 * 117.87335 * 179.97438 * 15 14 12 17 17 C 1.41085 * 128.70754 * 180.02562 * 16 15 14 18 18 C 1.37204 * 120.46999 * 180.02562 * 17 16 15 19 19 C 1.38894 * 120.57219 * 359.95950 * 18 17 16 20 20 F 1.35095 * 120.03560 * 179.97438 * 19 18 17 21 21 C 1.37892 * 119.92725 * 0.02562 * 19 18 17 22 22 C 1.39286 * 120.18424 * 359.97438 * 21 19 18 23 23 S 1.75803 * 124.81355 * 359.70396 * 14 12 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 29 29 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 30 30 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 31 31 H 1.07991 * 119.76009 * 0.02562 * 17 16 15 32 32 H 1.07993 * 119.71171 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.91229 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.8120 -0.0198 2.1048 15 7 3.2906 -0.5348 3.1846 16 6 4.0524 0.2502 3.9740 17 6 4.6848 -0.0732 5.1930 18 6 5.4272 0.8667 5.8623 19 6 5.5690 2.1503 5.3510 20 9 6.3021 3.0673 6.0194 21 6 4.9597 2.4878 4.1609 22 6 4.2027 1.5449 3.4696 23 16 3.3188 1.6564 1.9495 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 0.7092 1.1618 -3.4843 28 1 2.4157 -2.7377 0.9716 29 1 1.6238 -2.2853 2.5002 30 1 0.6904 -2.3002 0.9846 31 1 4.5838 -1.0675 5.6020 32 1 5.9057 0.6060 6.7947 33 1 5.0697 3.4861 3.7638 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603301875.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:54 Heat of formation + Delta-G solvation = 2.232897 kcal Electronic energy + Delta-G solvation = -18889.215205 eV Core-core repulsion = 15762.415771 eV Total energy + Delta-G solvation = -3126.799434 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85442 -41.05434 -39.08738 -36.86022 -34.73846 -32.13152 -31.49149 -29.73771 -27.95708 -27.33860 -25.04438 -24.04828 -22.41326 -21.40692 -19.56817 -18.74567 -18.16250 -17.95010 -17.02551 -16.69199 -16.64980 -16.05469 -16.03646 -15.40567 -14.84216 -14.72419 -14.53655 -14.31253 -14.02023 -13.54962 -13.27830 -13.04475 -13.02427 -12.81058 -12.61209 -12.54337 -12.24131 -12.13780 -11.73615 -11.25362 -11.12588 -10.60829 -10.57501 -10.24943 -9.21219 -8.45182 -8.15228 -6.37932 -0.39259 0.04824 0.05794 0.73001 1.37106 1.40378 1.44430 1.53744 1.96817 2.40481 2.63807 3.07546 3.27745 3.37622 3.70468 4.05730 4.20387 4.31811 4.47036 4.61254 4.65977 4.84109 4.85713 4.90751 4.93713 4.97687 5.10729 5.16777 5.29366 5.56021 5.63124 5.77701 5.94053 6.05395 6.37275 6.66382 6.90392 7.33736 8.82134 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.004417 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.587434 B = 6337.818235 C = 6642.173724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.271 3.729 3 H 0.029 0.971 4 C -0.544 4.544 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.282 1.282 12 N -0.555 5.555 13 C 0.109 3.891 14 C 0.383 3.617 15 N -0.583 5.583 16 C 0.113 3.887 17 C -0.069 4.069 18 C -0.111 4.111 19 C 0.077 3.923 20 F -0.137 7.137 21 C -0.095 4.095 22 C -0.204 4.204 23 S 0.032 5.968 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.078 0.922 27 H 0.268 0.732 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 -0.342 12.817 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.583 4.583 5 H 0.076 0.924 6 C -0.173 4.173 7 N -0.546 5.546 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.208 1.208 12 N -0.268 5.268 13 C -0.035 4.035 14 C 0.008 3.992 15 N -0.312 5.312 16 C -0.008 4.008 17 C -0.090 4.090 18 C -0.132 4.132 19 C 0.054 3.946 20 F -0.116 7.116 21 C -0.119 4.119 22 C -0.324 4.324 23 S 0.282 5.718 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.178 0.822 32 H 0.196 0.804 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.536 -0.070 11.818 12.659 hybrid contribution 0.565 -0.238 -0.455 0.764 sum 5.102 -0.308 11.363 12.460 Atomic orbital electron populations 1.21979 0.96313 1.00735 1.00818 1.18950 0.92388 0.91561 0.80089 0.95380 1.21496 1.32501 1.13494 0.90774 0.92427 1.25554 0.94742 0.95482 1.01485 1.69956 1.36556 1.23328 1.24810 0.85478 0.78265 0.78553 0.79191 1.19563 1.20038 1.20769 1.46895 1.47527 1.12255 1.20112 1.21604 1.00902 0.79310 1.01685 1.24063 0.92895 0.91699 0.90585 1.66369 1.22155 1.35640 1.07041 1.19359 0.96892 0.87953 0.96614 1.20651 0.96154 1.01238 0.90968 1.21136 0.99708 0.90392 1.01982 1.17270 0.96970 0.88062 0.92265 1.91490 1.74940 1.65697 1.79451 1.20207 0.97641 0.99599 0.94416 1.23347 1.08993 0.99355 1.00723 1.85351 1.52908 1.12515 1.21051 0.93342 0.95331 0.90314 0.92227 0.93360 0.90457 0.90067 0.82198 0.80417 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 8.95 71.98 0.64 -5.50 16 2 C 0.27 12.70 2.67 44.24 0.12 12.82 16 3 H 0.03 1.45 6.33 -2.39 -0.02 1.44 16 4 C -0.54 -27.58 8.37 25.60 0.21 -27.36 16 5 H 0.06 2.96 7.65 -2.91 -0.02 2.93 16 6 C 0.03 1.45 5.30 84.65 0.45 1.90 16 7 N -0.91 -47.80 11.32 21.45 0.24 -47.56 16 8 Si 0.96 40.82 29.54 68.60 2.03 42.85 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.55 -23.19 2.84 -712.24 -2.02 -25.21 16 13 C 0.11 3.87 9.79 127.77 1.25 5.12 16 14 C 0.38 15.69 7.87 179.75 1.41 17.10 16 15 N -0.58 -22.37 9.79 -189.20 -1.85 -24.23 16 16 C 0.11 3.83 6.94 39.74 0.28 4.10 16 17 C -0.07 -1.72 10.09 22.73 0.23 -1.49 16 18 C -0.11 -2.30 9.97 22.18 0.22 -2.08 16 19 C 0.08 1.88 7.30 22.34 0.16 2.04 16 20 F -0.14 -3.21 17.27 44.97 0.78 -2.43 16 21 C -0.09 -2.65 10.03 22.44 0.23 -2.43 16 22 C -0.20 -6.89 6.52 22.89 0.15 -6.74 16 23 S 0.03 1.22 21.58 -56.49 -1.22 0.00 16 24 H 0.05 1.98 6.66 -2.39 -0.02 1.97 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 3.83 6.07 -2.39 -0.01 3.81 16 27 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 2.51 7.60 -2.38 -0.02 2.49 16 30 H 0.08 2.71 6.43 -2.39 -0.02 2.70 16 31 H 0.16 3.23 8.06 -2.92 -0.02 3.21 16 32 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -56.27 296.97 4.44 -51.83 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.14 Total: 7.27 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.35 Total: -2.52 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.63 Total: -97.00 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.22 Total: 0.00 kcal Total: -56.27 4.44 -51.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603301875.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.063 kcal (2) G-P(sol) polarization free energy of solvation -56.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds