Wall clock time and date at job start Tue Mar 31 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99620 * 2 1 3 5 5 H 1.07999 * 119.99803 * 119.99749 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00313 * 4 2 1 7 7 N 1.31510 * 119.99881 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47352 * 59.99684 * 8 6 4 10 10 H 1.48500 * 109.46964 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47120 * 299.99595 * 8 6 4 12 12 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 13 13 C 1.46506 * 119.99759 * 299.99885 * 12 2 1 14 14 C 1.38041 * 120.00130 * 120.00460 * 12 2 1 15 15 N 1.28860 * 124.81352 * 180.02562 * 14 12 2 16 16 C 1.34895 * 117.86792 * 179.97438 * 15 14 12 17 17 C 1.41083 * 128.70357 * 179.97438 * 16 15 14 18 18 C 1.37208 * 120.47145 * 180.02562 * 17 16 15 19 19 C 1.38898 * 120.56859 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.03594 * 180.02562 * 19 18 17 21 21 C 1.37898 * 119.92691 * 0.02562 * 19 18 17 22 22 C 1.39287 * 120.18315 * 359.97438 * 21 19 18 23 23 S 1.75800 * 124.81208 * 359.69169 * 14 12 2 24 24 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 25 25 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 27 27 H 0.97007 * 119.99999 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47060 * 90.00688 * 13 12 2 29 29 H 1.09004 * 109.47073 * 210.00177 * 13 12 2 30 30 H 1.09000 * 109.47212 * 330.00260 * 13 12 2 31 31 H 1.07993 * 119.76618 * 359.97438 * 17 16 15 32 32 H 1.07993 * 119.71695 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.90930 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.8073 -1.1189 4.0079 10 1 1.8277 -0.4191 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.8120 -0.0198 -2.1048 15 7 3.2906 -0.5349 -3.1846 16 6 4.0515 0.2505 -3.9745 17 6 4.6837 -0.0728 -5.1936 18 6 5.4261 0.8670 -5.8630 19 6 5.5669 2.1509 -5.3523 20 9 6.2999 3.0680 -6.0207 21 6 4.9575 2.4885 -4.1622 22 6 4.2006 1.5456 -3.4708 23 16 3.3064 1.6608 -1.9570 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7087 1.1615 3.4844 28 1 0.7376 -2.1445 -1.9993 29 1 2.4629 -2.5820 -1.9862 30 1 1.5294 -2.5969 -0.4707 31 1 4.5833 -1.0674 -5.6024 32 1 5.9045 0.6064 -6.7955 33 1 5.0674 3.4868 -3.7651 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603301876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:56 Heat of formation + Delta-G solvation = 1.667068 kcal Electronic energy + Delta-G solvation = -18889.005039 eV Core-core repulsion = 15762.181069 eV Total energy + Delta-G solvation = -3126.823970 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85321 -41.05322 -39.08080 -36.85640 -34.73254 -32.13149 -31.49016 -29.74329 -27.91595 -27.34721 -25.04048 -24.04998 -22.42095 -21.41443 -19.56597 -18.74595 -18.16320 -17.94063 -17.02310 -16.69209 -16.64945 -16.05117 -16.01757 -15.39682 -14.83768 -14.73899 -14.43315 -14.30240 -14.03215 -13.58689 -13.27286 -13.07658 -12.92188 -12.78074 -12.72051 -12.51503 -12.26041 -12.13650 -11.74234 -11.27849 -11.12635 -10.60334 -10.56642 -10.25138 -9.21245 -8.44624 -8.14982 -6.37562 -0.39203 0.04799 0.05790 0.72955 1.37162 1.43621 1.44918 1.51844 1.96772 2.41021 2.63747 3.08209 3.27653 3.37808 3.70487 4.05729 4.20347 4.35497 4.48185 4.59984 4.65081 4.83150 4.87563 4.92249 4.93641 4.97845 5.10733 5.17593 5.31494 5.55494 5.61291 5.76767 5.94040 6.06569 6.36965 6.66108 6.90530 7.33814 8.82445 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.004416 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.020069 B = 6339.024530 C = 6642.019657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.272 3.728 3 H 0.028 0.972 4 C -0.547 4.547 5 H 0.060 0.940 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.554 5.554 13 C 0.106 3.894 14 C 0.383 3.617 15 N -0.583 5.583 16 C 0.113 3.887 17 C -0.069 4.069 18 C -0.111 4.111 19 C 0.077 3.923 20 F -0.137 7.137 21 C -0.095 4.095 22 C -0.204 4.204 23 S 0.031 5.969 24 H 0.026 0.974 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.268 0.732 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.179 0.821 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -0.459 -12.665 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.585 4.585 5 H 0.078 0.922 6 C -0.172 4.172 7 N -0.546 5.546 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.268 5.268 13 C -0.038 4.038 14 C 0.008 3.992 15 N -0.312 5.312 16 C -0.008 4.008 17 C -0.090 4.090 18 C -0.132 4.132 19 C 0.054 3.946 20 F -0.116 7.116 21 C -0.119 4.119 22 C -0.324 4.324 23 S 0.281 5.719 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.178 0.822 32 H 0.196 0.804 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.711 -0.178 -11.670 12.586 hybrid contribution 0.540 -0.224 0.415 0.717 sum 5.251 -0.402 -11.254 12.426 Atomic orbital electron populations 1.21960 0.96380 1.00644 1.00701 1.18936 0.92317 0.91570 0.80089 0.95427 1.21451 1.32677 1.13657 0.90734 0.92195 1.25558 0.94710 0.95470 1.01499 1.69946 1.36443 1.23294 1.24935 0.85583 0.78488 0.78979 0.78470 1.20303 1.20699 1.19193 1.46901 1.47545 1.12240 1.20068 1.21646 1.00499 0.79568 1.02099 1.24066 0.92833 0.91688 0.90657 1.66376 1.22243 1.35673 1.06916 1.19358 0.96845 0.87994 0.96614 1.20652 0.96142 1.01245 0.90981 1.21138 0.99707 0.90382 1.01985 1.17274 0.96981 0.88058 0.92264 1.91492 1.74943 1.65695 1.79449 1.20209 0.97659 0.99597 0.94398 1.23345 1.08922 0.99352 1.00802 1.85349 1.52774 1.12061 1.21689 0.95493 0.93545 0.90339 0.92221 0.92236 0.90948 0.90344 0.82198 0.80414 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.12 8.97 71.98 0.65 -5.47 16 2 C 0.27 12.75 2.67 44.25 0.12 12.86 16 3 H 0.03 1.43 6.33 -2.39 -0.02 1.41 16 4 C -0.55 -27.55 7.99 25.60 0.20 -27.35 16 5 H 0.06 3.02 7.33 -2.91 -0.02 3.00 16 6 C 0.03 1.47 5.30 84.65 0.45 1.92 16 7 N -0.91 -47.80 11.32 21.45 0.24 -47.56 16 8 Si 0.96 40.59 29.54 68.60 2.03 42.62 16 9 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 12 N -0.55 -23.16 2.84 -712.22 -2.02 -25.19 16 13 C 0.11 3.75 9.54 127.77 1.22 4.97 16 14 C 0.38 15.70 7.87 179.75 1.41 17.11 16 15 N -0.58 -22.39 9.79 -189.20 -1.85 -24.24 16 16 C 0.11 3.83 6.94 39.74 0.28 4.11 16 17 C -0.07 -1.72 10.09 22.73 0.23 -1.49 16 18 C -0.11 -2.30 9.97 22.19 0.22 -2.08 16 19 C 0.08 1.88 7.30 22.35 0.16 2.04 16 20 F -0.14 -3.21 17.27 44.97 0.78 -2.43 16 21 C -0.09 -2.65 10.04 22.44 0.23 -2.43 16 22 C -0.20 -6.90 6.52 22.89 0.15 -6.75 16 23 S 0.03 1.21 21.58 -56.49 -1.22 -0.01 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.92 7.67 -2.39 -0.02 1.90 16 26 H 0.08 3.83 6.07 -2.39 -0.01 3.82 16 27 H 0.27 13.50 8.31 -92.70 -0.77 12.72 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 2.43 7.60 -2.38 -0.02 2.41 16 30 H 0.08 2.79 7.02 -2.39 -0.02 2.78 16 31 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -55.97 297.65 4.40 -51.57 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.14 Total: 7.82 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.31 Total: -2.57 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.63 Total: -96.99 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -1.22 Total: -0.01 kcal Total: -55.97 4.40 -51.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603301876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.238 kcal (2) G-P(sol) polarization free energy of solvation -55.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds