Wall clock time and date at job start Tue Mar 31 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 304.99671 * 3 2 1 5 5 C 1.50701 * 109.47348 * 184.99767 * 3 2 1 6 6 H 1.08001 * 120.00110 * 240.00127 * 5 3 2 7 7 C 1.37876 * 119.99696 * 59.99913 * 5 3 2 8 8 N 1.31513 * 120.00106 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99700 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47355 * 59.99798 * 9 7 5 11 11 H 1.48504 * 109.46635 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47063 * 299.99372 * 9 7 5 13 13 N 1.46500 * 109.47520 * 64.99751 * 3 2 1 14 14 C 1.30720 * 120.00513 * 240.00592 * 13 3 2 15 15 N 1.35052 * 124.97077 * 179.72028 * 14 13 3 16 16 H 0.96999 * 122.18119 * 359.97438 * 15 14 13 17 17 C 1.38487 * 115.62772 * 179.78187 * 15 14 13 18 18 C 1.40152 * 127.96639 * 180.18083 * 17 15 14 19 19 C 1.37632 * 120.65948 * 180.28737 * 18 17 15 20 20 C 1.38585 * 120.25613 * 0.04112 * 19 18 17 21 21 F 1.35100 * 120.13939 * 179.97438 * 20 19 18 22 22 C 1.38022 * 119.72856 * 359.97438 * 20 19 18 23 23 C 1.38641 * 113.21520 * 0.49173 * 17 15 14 24 24 S 1.75565 * 124.96027 * 0.02562 * 14 13 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 29 29 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 30 30 H 0.97003 * 120.00225 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.67055 * 0.33066 * 18 17 15 32 32 H 1.08003 * 119.87291 * 180.02562 * 19 18 17 33 33 H 1.07993 * 119.83633 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0051 0.8801 -1.3810 10 1 6.5968 0.1454 -0.2341 11 1 6.3979 0.2157 -2.6497 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0976 1.2517 14 6 0.8949 3.1625 1.2249 15 7 0.4741 3.8408 2.3143 16 1 0.7147 3.5722 3.2149 17 6 -0.3197 4.9470 2.0615 18 6 -0.8890 5.8299 2.9893 19 6 -1.6644 6.8862 2.5685 20 6 -1.8930 7.0897 1.2169 21 9 -2.6550 8.1271 0.8064 22 6 -1.3391 6.2282 0.2917 23 6 -0.5519 5.1558 0.7108 24 16 0.2693 3.9156 -0.2324 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.8294 -0.0619 -2.9494 31 1 -0.7169 5.6802 4.0449 32 1 -2.0966 7.5590 3.2944 33 1 -1.5165 6.3849 -0.7620 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603339385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:20 Heat of formation + Delta-G solvation = 5.353411 kcal Electronic energy + Delta-G solvation = -18793.610025 eV Core-core repulsion = 15666.945907 eV Total energy + Delta-G solvation = -3126.664118 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.86940 -40.11553 -37.12668 -35.43394 -32.43052 -31.25066 -31.08517 -28.77831 -26.89547 -24.55761 -23.31424 -22.42397 -21.16526 -19.86387 -18.30286 -17.53975 -16.90625 -16.25673 -15.98224 -15.65596 -15.45386 -14.67133 -14.57584 -14.06057 -13.84317 -13.33788 -13.10997 -13.09083 -12.63256 -12.12351 -11.85826 -11.71390 -11.30853 -10.99927 -10.85074 -10.66382 -10.33131 -10.14315 -10.04784 -9.80413 -9.68598 -9.01258 -8.66063 -8.20702 -8.19197 -6.85621 -6.11964 -4.19861 0.96238 1.03051 1.66329 2.12308 2.77150 3.04353 3.27552 3.31373 3.35275 3.42629 4.24159 4.34705 4.50944 4.78992 5.05302 5.16341 5.19782 5.53703 5.70974 5.82529 5.93891 6.00887 6.18299 6.22987 6.41009 6.53222 6.83386 6.86463 6.95984 7.18083 7.34204 7.47957 7.70131 7.90314 8.19276 8.57018 8.87721 9.45193 10.92480 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027459 B = 0.004387 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.470244 B = 6380.501287 C = 6574.675030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.224 3.776 4 H 0.022 0.978 5 C -0.508 4.508 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.503 5.503 14 C 0.328 3.672 15 N -0.630 5.630 16 H 0.420 0.580 17 C 0.164 3.836 18 C -0.116 4.116 19 C -0.114 4.114 20 C 0.068 3.932 21 F -0.141 7.141 22 C -0.084 4.084 23 C -0.154 4.154 24 S 0.031 5.969 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.265 0.735 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 10.194 7.366 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.116 3.884 4 H 0.039 0.961 5 C -0.547 4.547 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.229 5.229 14 C -0.061 4.061 15 N -0.256 5.256 16 H 0.259 0.741 17 C 0.054 3.946 18 C -0.140 4.140 19 C -0.136 4.136 20 C 0.045 3.955 21 F -0.119 7.119 22 C -0.109 4.109 23 C -0.272 4.272 24 S 0.273 5.727 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.505 9.014 6.245 14.512 hybrid contribution 0.611 0.622 0.920 1.267 sum -8.894 9.636 7.165 14.943 Atomic orbital electron populations 1.21848 0.99054 0.99600 1.00074 1.21619 0.91784 0.98231 1.03154 1.19454 0.96071 0.91116 0.81798 0.96115 1.20963 0.89723 1.38403 1.05614 0.91968 1.24917 0.98776 0.94866 0.95307 1.69855 1.35261 1.38042 1.09498 0.86472 0.84686 0.78397 0.77409 1.20086 1.21052 1.20148 1.71579 1.11577 1.05948 1.33752 1.23768 0.98702 0.95892 0.87748 1.41124 1.49968 1.25699 1.08760 0.74146 1.17866 0.94043 0.89205 0.93464 1.20148 1.00463 0.94810 0.98575 1.20702 1.00008 0.98712 0.94166 1.17134 0.97466 0.88273 0.92613 1.91484 1.73537 1.55781 1.91136 1.20268 0.97423 0.93091 1.00111 1.21961 1.06710 1.03009 0.95502 1.85950 1.54277 1.24235 1.08264 0.93659 0.94330 0.94597 0.93794 0.87823 0.92510 0.84550 0.84108 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.80 37.16 0.36 -2.69 16 2 C -0.11 -2.64 5.45 -26.73 -0.15 -2.78 16 3 C 0.22 5.70 2.28 -69.08 -0.16 5.54 16 4 H 0.02 0.57 6.15 -51.93 -0.32 0.26 16 5 C -0.51 -14.13 8.84 -34.44 -0.30 -14.44 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.50 -11.46 9.68 -56.38 -0.55 -12.00 16 14 C 0.33 6.42 8.28 -90.18 -0.75 5.67 16 15 N -0.63 -9.70 5.64 -11.26 -0.06 -9.76 16 16 H 0.42 5.45 8.96 -40.82 -0.37 5.08 16 17 C 0.16 2.27 6.94 -83.99 -0.58 1.68 16 18 C -0.12 -1.21 10.06 -39.08 -0.39 -1.60 16 19 C -0.11 -1.13 9.99 -39.67 -0.40 -1.52 16 20 C 0.07 0.80 7.30 -39.53 -0.29 0.51 16 21 F -0.14 -1.66 17.27 2.25 0.04 -1.63 16 22 C -0.08 -1.08 10.04 -39.20 -0.39 -1.48 16 23 C -0.15 -2.32 6.42 -38.97 -0.25 -2.57 16 24 S 0.03 0.57 21.29 -107.50 -2.29 -1.72 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.71 7.75 -51.93 -0.40 0.31 16 28 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -29.27 300.26 -9.60 -38.87 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.48 Total: 1.67 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -3.39 Total: -12.04 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.02 Total: -45.84 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.29 Total: -1.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.27 -9.60 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603339385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.225 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds