Wall clock time and date at job start Tue Mar 31 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 304.99671 * 3 2 1 5 5 C 1.50701 * 109.47348 * 184.99767 * 3 2 1 6 6 H 1.08001 * 120.00110 * 240.00127 * 5 3 2 7 7 C 1.37876 * 119.99696 * 59.99913 * 5 3 2 8 8 N 1.31513 * 120.00106 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99700 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47355 * 59.99798 * 9 7 5 11 11 H 1.48504 * 109.46635 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47063 * 299.99372 * 9 7 5 13 13 N 1.46500 * 109.47520 * 64.99751 * 3 2 1 14 14 C 1.30720 * 120.00513 * 240.00592 * 13 3 2 15 15 N 1.35052 * 124.97077 * 179.72028 * 14 13 3 16 16 H 0.96999 * 122.18119 * 359.97438 * 15 14 13 17 17 C 1.38487 * 115.62772 * 179.78187 * 15 14 13 18 18 C 1.40152 * 127.96639 * 180.18083 * 17 15 14 19 19 C 1.37632 * 120.65948 * 180.28737 * 18 17 15 20 20 C 1.38585 * 120.25613 * 0.04112 * 19 18 17 21 21 F 1.35100 * 120.13939 * 179.97438 * 20 19 18 22 22 C 1.38022 * 119.72856 * 359.97438 * 20 19 18 23 23 C 1.38641 * 113.21520 * 0.49173 * 17 15 14 24 24 S 1.75565 * 124.96027 * 0.02562 * 14 13 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 29 29 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 30 30 H 0.97003 * 120.00225 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.67055 * 0.33066 * 18 17 15 32 32 H 1.08003 * 119.87291 * 180.02562 * 19 18 17 33 33 H 1.07993 * 119.83633 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0051 0.8801 -1.3810 10 1 6.5968 0.1454 -0.2341 11 1 6.3979 0.2157 -2.6497 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0976 1.2517 14 6 0.8949 3.1625 1.2249 15 7 0.4741 3.8408 2.3143 16 1 0.7147 3.5722 3.2149 17 6 -0.3197 4.9470 2.0615 18 6 -0.8890 5.8299 2.9893 19 6 -1.6644 6.8862 2.5685 20 6 -1.8930 7.0897 1.2169 21 9 -2.6550 8.1271 0.8064 22 6 -1.3391 6.2282 0.2917 23 6 -0.5519 5.1558 0.7108 24 16 0.2693 3.9156 -0.2324 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.8294 -0.0619 -2.9494 31 1 -0.7169 5.6802 4.0449 32 1 -2.0966 7.5590 3.2944 33 1 -1.5165 6.3849 -0.7620 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603339385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:20 Heat of formation + Delta-G solvation = -11.835987 kcal Electronic energy + Delta-G solvation = -18794.355414 eV Core-core repulsion = 15666.945907 eV Total energy + Delta-G solvation = -3127.409507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.82244 -41.25823 -38.51383 -37.01055 -34.29677 -32.78662 -32.22611 -30.03632 -28.68671 -25.87245 -24.97352 -23.64026 -22.46997 -21.56559 -19.52081 -18.76938 -18.51243 -17.85358 -17.25892 -16.79562 -16.63422 -16.34593 -15.88874 -15.43274 -15.02237 -14.84148 -14.48530 -14.16535 -14.06246 -13.82851 -13.21471 -13.17369 -12.92988 -12.81109 -12.70307 -12.17450 -11.96275 -11.73578 -11.70053 -11.49177 -11.16595 -10.70149 -10.41109 -9.98025 -9.35421 -8.35866 -8.10273 -6.33054 -0.02731 0.01452 0.25663 0.81268 1.26845 1.39917 1.41098 1.49729 1.77878 2.39205 2.43757 3.08350 3.28802 3.51863 3.94402 3.98858 4.18574 4.29410 4.47467 4.49842 4.65255 4.68136 4.85869 4.95851 4.98901 5.09920 5.14730 5.31686 5.42637 5.52661 5.64847 5.84451 5.88028 6.18586 6.21492 6.69465 7.01694 7.37144 8.85887 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027459 B = 0.004387 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.470244 B = 6380.501287 C = 6574.675030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C 0.230 3.770 4 H -0.001 1.001 5 C -0.533 4.533 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.275 1.275 12 H -0.274 1.274 13 N -0.546 5.546 14 C 0.344 3.656 15 N -0.619 5.619 16 H 0.431 0.569 17 C 0.146 3.854 18 C -0.095 4.095 19 C -0.095 4.095 20 C 0.072 3.928 21 F -0.139 7.139 22 C -0.092 4.092 23 C -0.168 4.168 24 S -0.017 6.017 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.267 0.733 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 12.214 9.373 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.144 4.144 3 C 0.121 3.879 4 H 0.016 0.984 5 C -0.572 4.572 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.200 1.200 12 H -0.199 1.199 13 N -0.274 5.274 14 C -0.045 4.045 15 N -0.247 5.247 16 H 0.273 0.727 17 C 0.038 3.962 18 C -0.118 4.118 19 C -0.117 4.117 20 C 0.049 3.951 21 F -0.118 7.118 22 C -0.116 4.116 23 C -0.285 4.285 24 S 0.224 5.776 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.194 0.806 32 H 0.200 0.800 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.758 11.093 8.286 17.534 hybrid contribution 0.776 0.278 0.365 0.902 sum -9.982 11.372 8.651 17.429 Atomic orbital electron populations 1.21673 0.96398 1.01012 0.99957 1.21462 0.94154 0.97586 1.01186 1.19149 0.94662 0.91590 0.82543 0.98385 1.21242 0.91518 1.38825 1.05612 0.93549 1.25665 1.03014 0.94375 0.94885 1.69969 1.36807 1.38320 1.09765 0.85543 0.79594 0.78408 0.77704 1.19639 1.20027 1.19929 1.71508 1.15391 1.08493 1.32052 1.23878 0.96778 0.94779 0.89036 1.41069 1.49700 1.25681 1.08252 0.72734 1.18232 0.94727 0.89519 0.93684 1.20610 0.98312 0.93048 0.99828 1.21184 0.98240 0.98332 0.93911 1.17284 0.96813 0.87707 0.93266 1.91502 1.73395 1.55581 1.91275 1.20379 0.97307 0.92853 1.01078 1.21834 1.08284 1.03206 0.95223 1.86052 1.55512 1.26586 1.09439 0.94150 0.92044 0.94191 0.94832 0.90419 0.92367 0.80568 0.80030 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 9.80 71.98 0.71 -4.86 16 2 C -0.10 -5.29 5.45 30.60 0.17 -5.12 16 3 C 0.23 12.24 2.28 44.24 0.10 12.34 16 4 H 0.00 -0.07 6.15 -2.39 -0.01 -0.08 16 5 C -0.53 -30.93 8.84 25.60 0.23 -30.70 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.55 -25.73 9.68 -332.29 -3.22 -28.95 16 14 C 0.34 13.70 8.28 180.20 1.49 15.19 16 15 N -0.62 -18.38 5.64 -189.54 -1.07 -19.45 16 16 H 0.43 10.49 8.96 -92.71 -0.83 9.66 16 17 C 0.15 3.70 6.94 38.65 0.27 3.96 16 18 C -0.10 -1.52 10.06 22.59 0.23 -1.29 16 19 C -0.10 -1.38 9.99 22.21 0.22 -1.16 16 20 C 0.07 1.43 7.30 22.30 0.16 1.59 16 21 F -0.14 -2.80 17.27 44.97 0.78 -2.03 16 22 C -0.09 -2.21 10.04 22.52 0.23 -1.99 16 23 C -0.17 -4.89 6.42 22.66 0.15 -4.75 16 24 S -0.02 -0.65 21.29 -56.49 -1.20 -1.85 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 27 H 0.04 1.61 7.75 -2.39 -0.02 1.59 16 28 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 4.28 5.95 -2.39 -0.01 4.27 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -66.65 300.26 2.27 -64.39 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.32 Total: 8.73 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 4.39 Total: -15.17 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -4.04 Total: -100.41 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -1.20 Total: -1.85 kcal Total: -66.65 2.27 -64.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603339385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.550 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds