Wall clock time and date at job start Tue Mar 31 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47177 * 2 1 4 4 H 1.08997 * 109.47098 * 54.99498 * 3 2 1 5 5 C 1.50700 * 109.47141 * 174.99821 * 3 2 1 6 6 H 1.07996 * 119.99701 * 119.99602 * 5 3 2 7 7 C 1.37877 * 120.00072 * 299.99863 * 5 3 2 8 8 N 1.31519 * 120.00035 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99952 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47198 * 89.99879 * 9 7 5 11 11 H 1.48497 * 109.47037 * 210.00072 * 9 7 5 12 12 H 1.48504 * 109.46965 * 329.99755 * 9 7 5 13 13 N 1.46504 * 109.46572 * 294.99603 * 3 2 1 14 14 C 1.30717 * 119.99515 * 120.00326 * 13 3 2 15 15 N 1.35047 * 124.96307 * 180.02562 * 14 13 3 16 16 H 0.97002 * 122.19028 * 359.97438 * 15 14 13 17 17 C 1.38495 * 115.63106 * 179.97438 * 15 14 13 18 18 C 1.40148 * 127.96920 * 179.97438 * 17 15 14 19 19 C 1.37628 * 120.66326 * 179.97438 * 18 17 15 20 20 C 1.38594 * 120.24760 * 359.79130 * 19 18 17 21 21 F 1.35099 * 120.13592 * 180.25034 * 20 19 18 22 22 C 1.38014 * 119.73315 * 0.44629 * 20 19 18 23 23 C 1.38645 * 113.21236 * 0.02562 * 17 15 14 24 24 S 1.75566 * 124.96946 * 0.02562 * 14 13 3 25 25 H 1.08995 * 109.46992 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47067 * 300.00583 * 1 2 3 27 27 H 1.09000 * 109.46967 * 60.00598 * 1 2 3 28 28 H 1.08993 * 109.47605 * 239.99493 * 2 1 3 29 29 H 1.09008 * 109.47142 * 119.99723 * 2 1 3 30 30 H 0.96991 * 119.99775 * 179.97438 * 8 7 5 31 31 H 1.08008 * 119.67097 * 359.97438 * 18 17 15 32 32 H 1.07996 * 119.87802 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.83853 * 179.81374 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8796 1.3359 9 14 3.0963 0.1089 2.5701 10 1 2.8755 -1.3272 2.2634 11 1 3.7935 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.8949 3.1623 -1.2251 15 7 0.4782 3.8432 -2.3143 16 1 0.7225 3.5774 -3.2147 17 6 -0.3207 4.9461 -2.0621 18 6 -0.8900 5.8287 -2.9899 19 6 -1.6665 6.8844 -2.5695 20 6 -1.8990 7.0852 -1.2180 21 9 -2.6657 8.1193 -0.8080 22 6 -1.3408 6.2270 -0.2924 23 6 -0.5520 5.1558 -0.7112 24 16 0.2705 3.9165 0.2322 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 1.8934 -0.5138 0.8901 30 1 5.8770 0.4818 2.1128 31 1 -0.7177 5.6790 -4.0456 32 1 -2.0993 7.5566 -3.2955 33 1 -1.5184 6.3837 0.7613 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603339389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:22 Heat of formation + Delta-G solvation = -5.999175 kcal Electronic energy + Delta-G solvation = -18879.848949 eV Core-core repulsion = 15752.692545 eV Total energy + Delta-G solvation = -3127.156403 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.83514 -41.30583 -38.67265 -37.16413 -34.43753 -33.16647 -32.25259 -30.17182 -29.07998 -25.87781 -24.72877 -23.74272 -22.64879 -21.76302 -19.54514 -19.13180 -18.66311 -17.92913 -17.40447 -16.91718 -16.64884 -16.44208 -15.90859 -15.51247 -15.24689 -14.99501 -14.54599 -14.22173 -14.13580 -14.07521 -13.68553 -13.27887 -13.01227 -12.91750 -12.69797 -12.37912 -11.98376 -11.78901 -11.61436 -11.41901 -11.24747 -10.83966 -10.50732 -10.16799 -9.38456 -8.40036 -8.32302 -6.44886 -0.06220 -0.00854 0.16951 0.72596 1.19450 1.24828 1.30556 1.40681 1.70514 2.23577 2.41219 2.93786 3.27086 3.48118 3.80550 3.94463 4.12963 4.18025 4.23346 4.31726 4.41989 4.63411 4.66445 4.82425 4.95188 4.99004 5.05920 5.08619 5.13068 5.35379 5.42824 5.56588 5.80817 5.98455 6.22031 6.58127 6.90243 7.20669 8.77955 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029528 B = 0.004619 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.009510 B = 6060.575881 C = 6185.982228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.205 3.795 4 H 0.012 0.988 5 C -0.519 4.519 6 H 0.029 0.971 7 C 0.021 3.979 8 N -0.941 5.941 9 Si 0.941 3.059 10 H -0.256 1.256 11 H -0.289 1.289 12 H -0.247 1.247 13 N -0.542 5.542 14 C 0.351 3.649 15 N -0.618 5.618 16 H 0.433 0.567 17 C 0.146 3.854 18 C -0.094 4.094 19 C -0.095 4.095 20 C 0.073 3.927 21 F -0.138 7.138 22 C -0.090 4.090 23 C -0.165 4.165 24 S -0.014 6.014 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.271 0.729 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.992 10.769 -7.190 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.094 3.906 4 H 0.029 0.971 5 C -0.558 4.558 6 H 0.048 0.952 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.766 3.234 10 H -0.181 1.181 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.271 5.271 14 C -0.038 4.038 15 N -0.245 5.245 16 H 0.274 0.726 17 C 0.038 3.962 18 C -0.117 4.117 19 C -0.116 4.116 20 C 0.051 3.949 21 F -0.117 7.117 22 C -0.115 4.115 23 C -0.283 4.283 24 S 0.227 5.773 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.194 0.806 32 H 0.199 0.801 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.185 9.716 -6.195 21.528 hybrid contribution 0.225 0.095 -0.110 0.268 sum -17.960 9.811 -6.306 21.414 Atomic orbital electron populations 1.21761 0.94490 1.02415 1.01374 1.21859 0.96327 0.96767 1.00917 1.19503 0.94159 0.92119 0.84802 0.97089 1.21038 0.90408 1.38415 1.05889 0.95231 1.25753 0.96035 0.95846 1.00103 1.70010 1.10673 1.46376 1.30953 0.85955 0.79608 0.80097 0.77724 1.18131 1.21577 1.17080 1.71449 1.15867 1.09278 1.30482 1.23908 0.96181 0.94444 0.89275 1.41070 1.49327 1.25769 1.08365 0.72609 1.18219 0.94692 0.89558 0.93710 1.20615 0.98221 0.92966 0.99878 1.21198 0.98150 0.98282 0.93990 1.17292 0.96589 0.87799 0.93254 1.91506 1.73098 1.55838 1.91273 1.20385 0.97123 0.92779 1.01163 1.21757 1.08310 1.03230 0.94993 1.85840 1.55361 1.26815 1.09302 0.90759 0.93090 0.92959 0.92029 0.93326 0.92027 0.80585 0.80064 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.80 71.98 0.71 -4.31 16 2 C -0.12 -5.33 5.11 30.60 0.16 -5.17 16 3 C 0.20 10.17 1.88 44.25 0.08 10.26 16 4 H 0.01 0.59 5.21 -2.39 -0.01 0.57 16 5 C -0.52 -31.27 9.42 25.60 0.24 -31.03 16 6 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 7 C 0.02 1.26 5.45 84.65 0.46 1.72 16 8 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 9 Si 0.94 45.02 24.41 68.60 1.67 46.69 16 10 H -0.26 -11.43 6.83 99.48 0.68 -10.75 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 13 N -0.54 -24.42 9.68 -332.28 -3.22 -27.64 16 14 C 0.35 13.16 8.28 180.20 1.49 14.65 16 15 N -0.62 -17.29 5.64 -189.54 -1.07 -18.36 16 16 H 0.43 9.96 8.96 -92.71 -0.83 9.13 16 17 C 0.15 3.44 6.94 38.65 0.27 3.70 16 18 C -0.09 -1.38 10.06 22.59 0.23 -1.15 16 19 C -0.10 -1.26 10.00 22.21 0.22 -1.03 16 20 C 0.07 1.34 7.30 22.30 0.16 1.51 16 21 F -0.14 -2.62 17.27 44.97 0.78 -1.84 16 22 C -0.09 -2.00 10.04 22.51 0.23 -1.77 16 23 C -0.17 -4.46 6.42 22.66 0.15 -4.31 16 24 S -0.01 -0.50 21.29 -56.49 -1.20 -1.70 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.79 7.75 -2.39 -0.02 1.77 16 28 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.05 2.20 3.21 -2.38 -0.01 2.19 16 30 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -72.36 293.50 1.90 -70.46 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.24 Total: 8.71 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 4.39 Total: -16.94 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.99 Total: -105.38 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.69 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -1.20 Total: -1.70 kcal Total: -72.36 1.90 -70.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603339389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.462 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds