Wall clock time and date at job start Tue Mar 31 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00380 * 2 1 4 4 H 1.48501 * 109.46681 * 270.00388 * 3 2 1 5 5 H 1.48495 * 109.46999 * 30.00134 * 3 2 1 6 6 H 1.48492 * 109.46920 * 150.00320 * 3 2 1 7 7 C 1.37877 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47289 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47462 * 179.97438 * 10 9 7 12 12 C 1.38865 * 120.00533 * 180.02562 * 11 10 9 13 13 N 1.33139 * 120.56507 * 359.97438 * 12 11 10 14 14 C 1.31752 * 121.23283 * 179.97438 * 13 12 11 15 15 N 1.31939 * 121.90590 * 359.94584 * 14 13 12 16 16 C 1.32774 * 120.51445 * 359.97438 * 15 14 13 17 17 C 1.39474 * 119.75495 * 0.13561 * 16 15 14 18 18 N 1.39270 * 121.90062 * 179.56092 * 17 16 15 19 19 C 1.33229 * 125.60289 * 21.59346 * 18 17 16 20 20 O 1.21306 * 118.26749 * 180.11903 * 19 18 17 21 21 C 1.50360 * 123.47171 * 0.09583 * 19 18 17 22 22 S 1.76287 * 120.86306 * 180.41861 * 16 15 14 23 23 H 0.97002 * 119.99695 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47378 * 60.00128 * 9 7 2 25 25 H 1.09000 * 109.47144 * 299.99825 * 9 7 2 26 26 H 1.09003 * 109.47312 * 59.99804 * 10 9 7 27 27 H 1.09000 * 109.47060 * 300.00091 * 10 9 7 28 28 H 0.97000 * 119.99535 * 359.97438 * 11 10 9 29 29 H 1.08009 * 119.04068 * 179.97438 * 14 13 12 30 30 H 0.97000 * 117.19775 * 201.56665 * 18 17 16 31 31 H 1.08998 * 109.53628 * 84.48871 * 21 19 18 32 32 H 1.09002 * 109.53362 * 204.64411 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0018 11 7 1.5125 -4.9309 -0.0012 12 6 2.2068 -6.1335 -0.0016 13 7 3.5381 -6.1468 -0.0031 14 6 4.2100 -7.2801 -0.0030 15 7 3.6022 -8.4511 -0.0004 16 6 2.2763 -8.5225 0.0027 17 6 1.5200 -7.3507 0.0004 18 7 0.1275 -7.3735 -0.0055 19 6 -0.6332 -8.3935 0.3892 20 8 -1.8382 -8.2700 0.3251 21 6 -0.0771 -9.6901 0.9093 22 16 1.4547 -10.0822 0.0173 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8877 27 1 2.8710 -3.6040 -0.8923 28 1 0.5426 -4.9308 0.0003 29 1 5.2896 -7.2495 -0.0047 30 1 -0.3275 -6.5782 -0.3239 31 1 0.1378 -9.5937 1.9736 32 1 -0.8049 -10.4868 0.7552 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618680506.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:52 Heat of formation + Delta-G solvation = -2.397020 kcal Electronic energy + Delta-G solvation = -18777.630985 eV Core-core repulsion = 15670.550745 eV Total energy + Delta-G solvation = -3107.080241 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.51021 -40.98365 -38.06779 -36.97978 -35.36713 -33.84650 -32.12402 -31.24169 -30.41234 -27.04223 -25.78486 -24.56457 -22.92805 -22.11111 -20.20970 -19.32884 -19.13479 -18.38415 -17.88081 -17.28312 -17.10929 -16.48694 -16.37230 -15.78352 -15.53189 -15.46786 -15.41546 -14.47029 -14.26914 -13.99614 -13.34075 -13.28297 -12.77469 -12.75471 -12.67399 -12.51862 -12.14934 -12.02980 -11.63587 -11.49324 -11.42730 -10.72205 -10.56754 -10.26571 -9.23485 -8.75654 -8.25914 -6.36603 -0.56054 -0.08878 0.05377 0.77660 1.31837 1.42065 1.42283 1.53321 1.54725 1.91214 2.40745 2.64177 2.86484 3.09921 3.12710 3.29110 3.57928 3.82631 3.91881 4.26730 4.40545 4.50856 4.84085 5.01243 5.05515 5.36081 5.47602 5.54126 5.61243 5.76452 5.95639 6.10766 6.33575 6.52339 6.78123 7.09256 7.33520 8.86091 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.003847 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.971545 B = 7276.695022 C = 8246.268632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.017 3.983 10 C 0.156 3.844 11 N -0.698 5.698 12 C 0.432 3.568 13 N -0.571 5.571 14 C 0.338 3.662 15 N -0.526 5.526 16 C 0.141 3.859 17 C -0.025 4.025 18 N -0.640 5.640 19 C 0.521 3.479 20 O -0.550 6.550 21 C -0.130 4.130 22 S 0.007 5.993 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.410 0.590 29 H 0.239 0.761 30 H 0.410 0.590 31 H 0.152 0.848 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -20.070 1.422 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.033 3.967 11 N -0.330 5.330 12 C 0.183 3.817 13 N -0.297 5.297 14 C 0.047 3.953 15 N -0.247 5.247 16 C -0.116 4.116 17 C -0.139 4.139 18 N -0.285 5.285 19 C 0.308 3.692 20 O -0.428 6.428 21 C -0.281 4.281 22 S 0.245 5.755 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.247 0.753 29 H 0.255 0.745 30 H 0.248 0.752 31 H 0.169 0.831 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.928 -21.038 1.050 21.633 hybrid contribution -1.616 2.839 0.269 3.278 sum 3.312 -18.199 1.319 18.544 Atomic orbital electron populations 1.70069 1.07737 1.27974 1.51162 1.25896 0.95712 1.03257 0.94455 0.85436 0.78729 0.78365 0.78489 1.19839 1.20955 1.18593 1.21446 0.93792 0.91504 1.51277 0.91606 1.19179 0.94492 0.92365 0.95979 1.21287 0.94441 0.80094 1.00856 1.44960 1.08765 1.02877 1.76419 1.18456 0.89049 0.85020 0.89156 1.68063 1.05263 1.33384 1.22989 1.25524 1.02131 0.80323 0.87352 1.68653 1.06355 1.29473 1.20261 1.23024 0.93736 0.96363 0.98429 1.18282 0.84193 0.94346 1.17030 1.42743 1.03677 1.19417 1.62683 1.20396 0.86523 0.85265 0.77046 1.90848 1.15055 1.82109 1.54766 1.24109 0.99572 0.98134 1.06263 1.85816 1.13760 1.05279 1.70614 0.92658 0.97770 0.97889 0.92441 0.92335 0.75250 0.74479 0.75188 0.83056 0.79997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 2 C 0.01 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.97 42.50 29.54 68.60 2.03 44.52 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.54 -28.99 9.11 25.60 0.23 -28.76 16 8 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 0.84 5.09 29.85 0.15 0.99 16 10 C 0.16 6.02 5.68 86.38 0.49 6.51 16 11 N -0.70 -22.30 5.67 -344.08 -1.95 -24.25 16 12 C 0.43 12.73 7.54 133.04 1.00 13.73 16 13 N -0.57 -16.45 9.69 -197.04 -1.91 -18.35 16 14 C 0.34 7.78 12.29 180.85 2.22 10.00 16 15 N -0.53 -12.75 10.45 -196.38 -2.05 -14.80 16 16 C 0.14 3.39 6.96 84.85 0.59 3.98 16 17 C -0.03 -0.65 6.59 38.62 0.25 -0.40 16 18 N -0.64 -15.26 5.02 -305.14 -1.53 -16.79 16 19 C 0.52 11.76 7.61 87.79 0.67 12.43 16 20 O -0.55 -15.95 17.77 -3.11 -0.06 -16.00 16 21 C -0.13 -1.86 6.61 71.13 0.47 -1.39 16 22 S 0.01 0.13 22.48 -56.49 -1.27 -1.14 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.41 12.16 6.83 -92.71 -0.63 11.53 16 29 H 0.24 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.41 9.83 7.03 -92.71 -0.65 9.17 16 31 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.18 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.33 294.97 -0.01 -66.34 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.10 Total: 16.37 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 6.55 Total: 17.87 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -7.16 Total: -127.96 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.06 Total: -16.00 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.27 Total: -1.14 kcal Total: -66.33 -0.01 -66.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618680506.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.944 kcal (2) G-P(sol) polarization free energy of solvation -66.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds