Wall clock time and date at job start Tue Mar 31 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99918 * 2 1 4 4 C 1.47195 * 109.47523 * 275.00726 * 3 2 1 5 5 N 3.39044 * 106.82488 * 310.99722 * 2 1 3 6 6 S 1.65594 * 120.00313 * 180.02562 * 2 1 3 7 7 O 1.42105 * 106.40201 * 336.45786 * 6 2 1 8 8 O 1.42094 * 106.40701 * 203.53492 * 6 2 1 9 9 C 1.76200 * 107.21903 * 89.99284 * 6 2 1 10 10 C 1.38656 * 119.87843 * 270.29437 * 9 6 2 11 11 C 1.38611 * 120.50290 * 180.25437 * 10 9 6 12 12 C 1.37646 * 120.24720 * 359.45638 * 11 10 9 13 13 C 1.40700 * 119.74049 * 0.26612 * 12 11 10 14 14 C 1.41394 * 120.23887 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99918 * 204.39256 * 14 13 12 16 16 C 1.39939 * 120.00458 * 24.38628 * 14 13 12 17 17 N 1.30826 * 119.99815 * 17.86380 * 16 14 13 18 18 Si 1.86807 * 120.00442 * 197.86044 * 16 14 13 19 19 H 1.48504 * 109.46582 * 94.69503 * 18 16 14 20 20 H 1.48499 * 109.47234 * 214.69507 * 18 16 14 21 21 H 1.48502 * 109.46792 * 334.69880 * 18 16 14 22 22 C 1.37595 * 119.87305 * 90.00581 * 9 6 2 23 23 H 1.09006 * 109.46420 * 269.99094 * 1 2 3 24 24 H 1.08994 * 109.47311 * 29.98965 * 1 2 3 25 25 H 1.09000 * 109.46821 * 149.99952 * 1 2 3 26 26 H 1.09005 * 109.46618 * 35.00874 * 3 2 1 27 27 H 1.08997 * 109.47275 * 155.00148 * 3 2 1 28 28 H 1.08005 * 119.75084 * 0.02562 * 10 9 6 29 29 H 1.07994 * 119.87907 * 179.72408 * 11 10 9 30 30 H 1.07991 * 120.12819 * 180.25140 * 12 11 10 31 31 H 0.97002 * 120.00124 * 179.97438 * 17 16 14 32 32 H 1.07998 * 120.13108 * 0.03879 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3380 1.7543 -1.3824 5 7 2.4464 2.1290 -2.4494 6 16 2.2931 -1.4340 -0.0006 7 8 1.4115 -2.4067 0.5434 8 8 3.5760 -1.1570 0.5438 9 6 2.5537 -1.8851 -1.6839 10 6 1.6118 -2.6580 -2.3457 11 6 1.8062 -3.0247 -3.6682 12 6 2.9339 -2.6148 -4.3428 13 6 3.8936 -1.8254 -3.6830 14 6 5.0561 -1.3990 -4.3657 15 1 5.9488 -1.1524 -3.8100 16 6 5.0501 -1.2967 -5.7613 17 7 3.9143 -1.2490 -6.4088 18 14 6.6639 -1.2282 -6.6998 19 1 7.0334 -2.5945 -7.1493 20 1 6.5117 -0.3424 -7.8820 21 1 7.7292 -0.6933 -5.8142 22 6 3.6884 -1.4640 -2.3384 23 1 -0.3632 -0.0002 1.0278 24 1 -0.3633 0.8900 -0.5136 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6501 2.0042 0.5896 27 1 3.1858 1.1178 0.4343 28 1 0.7216 -2.9799 -1.8256 29 1 1.0681 -3.6306 -4.1725 30 1 3.0814 -2.8983 -5.3743 31 1 3.9102 -1.1777 -7.3762 32 1 4.4189 -0.8587 -1.8223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619569644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:31 Heat of formation + Delta-G solvation = -21.567142 kcal Electronic energy + Delta-G solvation = -19651.909732 eV Core-core repulsion = 16511.705461 eV Total energy + Delta-G solvation = -3140.204271 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.65985 -37.27852 -36.82887 -35.47301 -35.19953 -33.85182 -30.09243 -29.82198 -28.91134 -25.49724 -25.15751 -21.90510 -21.01402 -19.15315 -18.11906 -17.80720 -17.09930 -16.17433 -15.86968 -15.26193 -14.73677 -14.57025 -14.01737 -13.72780 -13.50344 -13.33768 -12.69939 -12.62454 -12.54464 -12.40755 -11.94264 -11.86091 -11.69139 -11.47148 -11.39881 -11.36834 -11.20154 -11.03346 -10.91335 -10.60758 -9.85794 -9.70468 -9.35985 -9.17365 -8.05893 -7.71511 -6.92386 -4.53560 0.78388 2.14130 2.62415 2.77501 3.00260 3.03226 3.04847 3.06711 3.55238 3.83353 4.02237 4.22615 4.39791 4.68803 4.80564 5.23930 5.31231 5.39972 5.53061 5.76563 5.84925 6.00362 6.13336 6.39060 6.61960 6.75054 6.86806 7.03586 7.20115 7.35171 7.70949 7.78766 7.79781 7.93434 8.39572 8.66690 8.71112 10.03049 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022009 B = 0.006161 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.880161 B = 4543.816975 C = 4965.096702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.999 5.999 3 C 0.217 3.783 4 C 0.166 3.834 5 N -0.392 5.392 6 S 2.684 3.316 7 O -0.963 6.963 8 O -0.964 6.964 9 C -0.634 4.634 10 C -0.149 4.149 11 C -0.120 4.120 12 C -0.118 4.118 13 C 0.094 3.906 14 C -0.458 4.458 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.791 5.791 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.123 4.123 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.125 0.875 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.283 0.717 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 3.610 9.066 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.835 5.835 3 C 0.088 3.912 4 C -0.156 4.156 5 N -0.070 5.070 6 S 2.781 3.219 7 O -0.954 6.954 8 O -0.955 6.955 9 C -0.726 4.726 10 C -0.171 4.171 11 C -0.140 4.140 12 C -0.137 4.137 13 C 0.090 3.910 14 C -0.487 4.487 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.416 5.416 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.144 4.144 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.143 0.857 27 H 0.153 0.847 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.812 3.777 8.043 10.105 hybrid contribution 0.485 -0.012 -1.135 1.235 sum -4.326 3.765 6.907 8.978 Atomic orbital electron populations 1.21547 0.77665 1.03766 1.02309 1.57669 1.15690 1.20356 1.89778 1.18744 1.00651 0.86467 0.85371 1.29865 0.94556 0.95175 0.95957 1.81263 1.07013 1.07601 1.11098 1.02018 0.72681 0.71923 0.75291 1.93526 1.66337 1.57464 1.78050 1.93521 1.39662 1.84204 1.78082 1.29709 1.05234 1.14959 1.22706 1.20041 0.98271 1.03402 0.95346 1.20804 0.98040 1.00822 0.94302 1.21648 0.94554 0.97186 1.00354 1.17663 0.92901 0.89644 0.90757 1.19630 0.98367 1.39393 0.91355 0.89934 1.25940 0.98039 0.92086 0.98271 1.69787 1.27318 1.34344 1.10141 0.86229 0.81939 0.79139 0.79105 1.19157 1.20143 1.18347 1.20713 0.95508 1.01845 0.96370 0.91764 0.90971 0.90455 0.85681 0.84712 0.87633 0.88378 0.85747 0.90581 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.30 59.85 0.62 1.58 16 2 N -1.00 -13.12 3.14 -124.90 -0.39 -13.51 16 3 C 0.22 2.34 6.14 -6.83 -0.04 2.30 16 4 C 0.17 2.54 15.76 -20.76 -0.33 2.21 16 5 N -0.39 -7.58 18.54 42.15 0.78 -6.79 16 6 S 2.68 47.31 5.65 -107.50 -0.61 46.71 16 7 O -0.96 -18.22 16.35 -57.17 -0.93 -19.15 16 8 O -0.96 -18.34 15.82 -57.17 -0.90 -19.24 16 9 C -0.63 -13.69 5.96 -39.66 -0.24 -13.93 16 10 C -0.15 -3.23 9.53 -39.29 -0.37 -3.61 16 11 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 12 C -0.12 -2.99 8.70 -38.87 -0.34 -3.33 16 13 C 0.09 2.47 5.58 -106.82 -0.60 1.88 16 14 C -0.46 -12.07 9.05 -37.75 -0.34 -12.41 16 15 H 0.08 2.10 7.91 -52.48 -0.41 1.68 16 16 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 17 N -0.79 -20.21 10.95 55.55 0.61 -19.60 16 18 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 25 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 26 H 0.13 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.14 1.35 6.92 -51.93 -0.36 0.99 16 28 H 0.11 2.02 7.61 -52.48 -0.40 1.62 16 29 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 30 H 0.12 3.22 6.15 -52.49 -0.32 2.89 16 31 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 32 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -32.72 301.46 -7.54 -40.26 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.12 Total: 3.20 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -2.49 Total: -29.98 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 1.00 Total: -39.91 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.84 Total: -38.40 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 47.31 SS G_CDS: -0.61 Total: 46.71 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.72 -7.54 -40.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.692 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds