Wall clock time and date at job start Tue Mar 31 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99918 * 2 1 4 4 C 1.47195 * 109.47523 * 275.00726 * 3 2 1 5 5 N 3.39044 * 106.82488 * 310.99722 * 2 1 3 6 6 S 1.65594 * 120.00313 * 180.02562 * 2 1 3 7 7 O 1.42105 * 106.40201 * 336.45786 * 6 2 1 8 8 O 1.42094 * 106.40701 * 203.53492 * 6 2 1 9 9 C 1.76200 * 107.21903 * 89.99284 * 6 2 1 10 10 C 1.38656 * 119.87843 * 270.29437 * 9 6 2 11 11 C 1.38611 * 120.50290 * 180.25437 * 10 9 6 12 12 C 1.37646 * 120.24720 * 359.45638 * 11 10 9 13 13 C 1.40700 * 119.74049 * 0.26612 * 12 11 10 14 14 C 1.41394 * 120.23887 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99918 * 204.39256 * 14 13 12 16 16 C 1.39939 * 120.00458 * 24.38628 * 14 13 12 17 17 N 1.30826 * 119.99815 * 17.86380 * 16 14 13 18 18 Si 1.86807 * 120.00442 * 197.86044 * 16 14 13 19 19 H 1.48504 * 109.46582 * 94.69503 * 18 16 14 20 20 H 1.48499 * 109.47234 * 214.69507 * 18 16 14 21 21 H 1.48502 * 109.46792 * 334.69880 * 18 16 14 22 22 C 1.37595 * 119.87305 * 90.00581 * 9 6 2 23 23 H 1.09006 * 109.46420 * 269.99094 * 1 2 3 24 24 H 1.08994 * 109.47311 * 29.98965 * 1 2 3 25 25 H 1.09000 * 109.46821 * 149.99952 * 1 2 3 26 26 H 1.09005 * 109.46618 * 35.00874 * 3 2 1 27 27 H 1.08997 * 109.47275 * 155.00148 * 3 2 1 28 28 H 1.08005 * 119.75084 * 0.02562 * 10 9 6 29 29 H 1.07994 * 119.87907 * 179.72408 * 11 10 9 30 30 H 1.07991 * 120.12819 * 180.25140 * 12 11 10 31 31 H 0.97002 * 120.00124 * 179.97438 * 17 16 14 32 32 H 1.07998 * 120.13108 * 0.03879 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3380 1.7543 -1.3824 5 7 2.4464 2.1290 -2.4494 6 16 2.2931 -1.4340 -0.0006 7 8 1.4115 -2.4067 0.5434 8 8 3.5760 -1.1570 0.5438 9 6 2.5537 -1.8851 -1.6839 10 6 1.6118 -2.6580 -2.3457 11 6 1.8062 -3.0247 -3.6682 12 6 2.9339 -2.6148 -4.3428 13 6 3.8936 -1.8254 -3.6830 14 6 5.0561 -1.3990 -4.3657 15 1 5.9488 -1.1524 -3.8100 16 6 5.0501 -1.2967 -5.7613 17 7 3.9143 -1.2490 -6.4088 18 14 6.6639 -1.2282 -6.6998 19 1 7.0334 -2.5945 -7.1493 20 1 6.5117 -0.3424 -7.8820 21 1 7.7292 -0.6933 -5.8142 22 6 3.6884 -1.4640 -2.3384 23 1 -0.3632 -0.0002 1.0278 24 1 -0.3633 0.8900 -0.5136 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6501 2.0042 0.5896 27 1 3.1858 1.1178 0.4343 28 1 0.7216 -2.9799 -1.8256 29 1 1.0681 -3.6306 -4.1725 30 1 3.0814 -2.8983 -5.3743 31 1 3.9102 -1.1777 -7.3762 32 1 4.4189 -0.8587 -1.8223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619569644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:31 Heat of formation + Delta-G solvation = -44.301968 kcal Electronic energy + Delta-G solvation = -19652.895588 eV Core-core repulsion = 16511.705461 eV Total energy + Delta-G solvation = -3141.190127 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.47287 -38.49921 -38.21242 -36.93646 -36.42221 -35.70863 -31.95304 -31.62188 -29.83832 -27.38857 -26.15108 -23.66591 -22.84697 -20.55670 -19.71987 -19.02141 -18.38209 -17.78261 -17.20367 -16.94734 -16.50699 -15.94323 -15.25873 -15.17217 -15.14023 -14.64440 -14.35570 -13.86316 -13.78873 -13.70166 -13.52328 -13.33487 -13.26867 -13.10033 -13.08198 -12.85280 -12.65237 -12.50053 -12.30348 -12.22567 -11.59484 -11.41053 -11.19761 -10.35720 -9.86225 -9.59483 -8.77729 -6.49763 -0.60439 0.37820 0.80833 1.30936 1.40081 1.45014 1.54417 1.85679 2.12577 2.26008 2.51451 2.71180 3.09464 3.36644 3.47699 3.85251 4.24872 4.39316 4.43521 4.56354 4.79490 4.82222 4.85838 4.95383 5.01169 5.06858 5.14756 5.36904 5.47340 5.52833 5.84973 5.89855 6.06792 6.48498 6.61953 6.75612 6.81014 8.20196 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022009 B = 0.006161 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.880161 B = 4543.816975 C = 4965.096702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.989 5.989 3 C 0.210 3.790 4 C 0.195 3.805 5 N -0.473 5.473 6 S 2.715 3.285 7 O -0.970 6.970 8 O -0.977 6.977 9 C -0.647 4.647 10 C -0.148 4.148 11 C -0.126 4.126 12 C -0.145 4.145 13 C 0.062 3.938 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.035 3.965 17 N -0.823 5.823 18 Si 0.982 3.018 19 H -0.257 1.257 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.140 4.140 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.192 0.808 27 H 0.148 0.852 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.291 0.709 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 4.168 11.047 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.827 5.827 3 C 0.081 3.919 4 C -0.125 4.125 5 N -0.151 5.151 6 S 2.806 3.194 7 O -0.961 6.961 8 O -0.967 6.967 9 C -0.734 4.734 10 C -0.168 4.168 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.059 3.941 14 C -0.528 4.528 15 H 0.095 0.905 16 C -0.180 4.180 17 N -0.449 5.449 18 Si 0.803 3.197 19 H -0.182 1.182 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.161 4.161 23 H 0.116 0.884 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.209 0.791 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.903 4.302 9.984 12.371 hybrid contribution 0.655 -0.165 -1.556 1.697 sum -5.248 4.137 8.428 10.756 Atomic orbital electron populations 1.21939 0.75433 1.04417 1.04776 1.57388 1.16995 1.19517 1.88809 1.19536 1.02413 0.86645 0.83260 1.30776 0.92165 0.93195 0.96358 1.81299 1.09769 1.10358 1.13693 1.01259 0.72414 0.72657 0.73054 1.93513 1.66383 1.59014 1.77142 1.93503 1.41151 1.84722 1.77370 1.30505 1.03837 1.13646 1.25441 1.20490 0.99085 1.02224 0.95010 1.21162 0.97633 1.00590 0.95113 1.21641 0.95996 0.98696 1.00141 1.18043 0.93532 0.90377 0.92178 1.19856 0.98633 1.41652 0.92679 0.90535 1.26776 1.01542 0.91115 0.98572 1.69833 1.29270 1.35041 1.10748 0.85185 0.77322 0.79560 0.77669 1.18179 1.19140 1.18225 1.20773 0.96721 1.02622 0.95988 0.88414 0.88830 0.91479 0.79059 0.83452 0.84589 0.85689 0.87223 0.89877 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.30 127.77 1.32 2.59 16 2 N -0.99 -22.24 3.14 -549.08 -1.73 -23.97 16 3 C 0.21 3.69 6.14 84.57 0.52 4.21 16 4 C 0.20 5.68 15.76 89.44 1.41 7.09 16 5 N -0.47 -18.41 18.54 20.00 0.37 -18.04 16 6 S 2.71 89.16 5.65 -56.49 -0.32 88.84 16 7 O -0.97 -33.73 16.35 -128.00 -2.09 -35.83 16 8 O -0.98 -35.23 15.82 -128.00 -2.02 -37.26 16 9 C -0.65 -27.58 5.96 22.22 0.13 -27.45 16 10 C -0.15 -6.22 9.53 22.46 0.21 -6.01 16 11 C -0.13 -5.74 10.02 22.22 0.22 -5.52 16 12 C -0.14 -7.65 8.70 22.73 0.20 -7.45 16 13 C 0.06 3.40 5.58 -21.29 -0.12 3.28 16 14 C -0.50 -27.63 9.05 23.46 0.21 -27.42 16 15 H 0.08 4.13 7.91 -2.91 -0.02 4.10 16 16 C 0.04 1.81 5.14 85.25 0.44 2.25 16 17 N -0.82 -43.73 10.95 21.82 0.24 -43.49 16 18 Si 0.98 39.12 29.60 68.60 2.03 41.15 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 C -0.14 -6.93 9.26 22.73 0.21 -6.72 16 23 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.09 1.17 8.07 -2.39 -0.02 1.15 16 25 H 0.07 1.27 7.79 -2.39 -0.02 1.25 16 26 H 0.19 0.99 8.11 -2.38 -0.02 0.97 16 27 H 0.15 2.40 6.92 -2.39 -0.02 2.38 16 28 H 0.14 4.83 7.61 -2.91 -0.02 4.81 16 29 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.11 5.98 6.15 -2.92 -0.02 5.97 16 31 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 32 H 0.11 5.14 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -75.30 301.46 2.38 -72.92 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.15 Total: 16.83 kcal Atomic # 6 Polarization: -65.91 SS G_CDS: 4.75 Total: -61.16 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.12 Total: -85.49 kcal Atomic # 8 Polarization: -68.97 SS G_CDS: -4.12 Total: -73.09 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: 89.16 SS G_CDS: -0.32 Total: 88.84 kcal Total: -75.30 2.38 -72.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.613 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds