Wall clock time and date at job start Tue Mar 31 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35669 * 117.00025 * 2 1 4 4 C 1.39280 * 119.83363 * 0.02562 * 3 2 1 5 5 C 1.36430 * 120.40707 * 179.97438 * 4 3 2 6 6 C 1.40177 * 120.05451 * 0.02562 * 5 4 3 7 7 C 1.46487 * 120.15939 * 180.27589 * 6 5 4 8 8 O 1.21341 * 119.99630 * 179.71997 * 7 6 5 9 9 C 1.40645 * 119.66945 * 359.97438 * 6 5 4 10 10 O 1.35606 * 120.19875 * 180.02562 * 9 6 5 11 11 C 1.42897 * 117.00005 * 180.02562 * 10 9 6 12 12 C 1.50700 * 109.47036 * 179.97438 * 11 10 9 13 13 O 1.21213 * 120.00230 * 0.02562 * 12 11 10 14 14 O 1.34308 * 119.99727 * 179.97438 * 12 11 10 15 15 C 1.34929 * 117.00069 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99625 * 0.02562 * 15 14 12 17 17 C 1.38744 * 120.00154 * 179.97438 * 15 14 12 18 18 N 1.31443 * 120.00442 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99982 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47186 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47113 * 120.00074 * 19 17 15 22 22 H 1.48504 * 109.47616 * 240.00414 * 19 17 15 23 23 C 1.38425 * 119.60190 * 0.02562 * 9 6 5 24 24 H 1.09002 * 109.46854 * 60.00066 * 1 2 3 25 25 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46891 * 300.00514 * 1 2 3 27 27 H 1.07996 * 119.79661 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.96992 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.00783 * 359.71843 * 7 6 5 30 30 H 1.08998 * 109.47218 * 300.00047 * 11 10 9 31 31 H 1.09004 * 109.47077 * 60.00351 * 11 10 9 32 32 H 0.96995 * 120.00625 * 179.97438 * 18 17 15 33 33 H 1.07996 * 120.03333 * 179.97438 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2830 2.3747 0.0005 5 6 1.8902 3.5965 0.0011 6 6 3.2891 3.6851 0.0005 7 6 3.9435 4.9957 0.0072 8 8 5.1547 5.0690 0.0119 9 6 4.0613 2.5096 0.0000 10 8 5.4153 2.5829 0.0000 11 6 6.1319 1.3466 -0.0011 12 6 7.6131 1.6245 -0.0016 13 8 8.0152 2.7680 -0.0005 14 8 8.4876 0.6052 -0.0021 15 6 9.7989 0.9230 -0.0020 16 1 10.1033 1.9592 -0.0010 17 6 10.7562 -0.0813 -0.0020 18 7 10.3857 -1.3425 -0.0026 19 14 12.5716 0.3588 -0.0025 20 1 12.7228 1.8360 -0.0022 21 1 13.2178 -0.2047 1.2100 22 1 13.2174 -0.2051 -1.2151 23 6 3.4306 1.2773 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2049 2.3112 0.0014 28 1 1.2925 4.4959 0.0019 29 1 3.3480 5.8967 0.0080 30 1 5.8696 0.7738 0.8883 31 1 5.8696 0.7754 -0.8917 32 1 11.0549 -2.0446 -0.0030 33 1 4.0167 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734631615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:05 Heat of formation + Delta-G solvation = -148.292372 kcal Electronic energy + Delta-G solvation = -20961.198732 eV Core-core repulsion = 17340.453620 eV Total energy + Delta-G solvation = -3620.745111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81070 -39.47545 -38.84933 -38.03111 -36.53091 -35.01567 -32.15800 -31.27270 -30.37319 -28.42092 -27.71815 -25.16870 -24.17887 -22.71098 -21.01755 -20.22465 -18.88537 -17.71340 -17.16000 -16.71950 -16.49100 -16.27286 -16.03970 -15.89076 -14.96264 -14.86925 -14.36625 -14.34428 -14.21890 -13.80163 -13.64891 -13.02817 -12.62023 -12.60839 -12.56056 -11.85214 -11.63027 -11.54586 -11.23354 -11.16605 -10.78955 -10.38504 -10.34963 -9.82299 -9.46660 -8.98691 -8.79659 -8.58353 -8.24896 -6.41588 -4.09708 0.69390 1.24059 2.57788 2.76332 2.97839 3.10505 3.22638 3.31831 3.47429 3.68012 4.04165 4.33341 4.42375 4.59145 4.71545 4.78895 4.81301 5.03245 5.09285 5.13487 5.22697 5.25615 5.40705 5.47298 5.50727 5.89192 6.00906 6.12143 6.30511 6.57756 7.01799 7.36225 7.41750 7.76906 7.94404 8.70011 9.07139 9.80640 10.76428 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.003880 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.730574 B = 7214.975435 C = 8375.255087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.199 3.801 4 C -0.264 4.264 5 C 0.006 3.994 6 C -0.263 4.263 7 C 0.368 3.632 8 O -0.428 6.428 9 C 0.231 3.769 10 O -0.253 6.253 11 C 0.070 3.930 12 C 0.398 3.602 13 O -0.523 6.523 14 O -0.212 6.212 15 C -0.381 4.381 16 H 0.099 0.901 17 C 0.042 3.958 18 N -0.866 5.866 19 Si 0.945 3.055 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.265 4.265 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.269 0.731 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.719 3.981 0.000 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.152 3.848 4 C -0.283 4.283 5 C -0.012 4.012 6 C -0.265 4.265 7 C 0.225 3.775 8 O -0.299 6.299 9 C 0.182 3.818 10 O -0.163 6.163 11 C -0.006 4.006 12 C 0.242 3.758 13 O -0.417 6.417 14 O -0.120 6.120 15 C -0.457 4.457 16 H 0.116 0.884 17 C -0.162 4.162 18 N -0.503 5.503 19 Si 0.770 3.230 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.284 4.284 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.593 4.072 0.003 21.973 hybrid contribution 0.256 -0.182 0.000 0.314 sum -21.337 3.890 0.003 21.688 Atomic orbital electron populations 1.23138 0.77870 1.04257 1.01649 1.86066 1.21846 1.26975 1.87376 1.18964 0.91472 0.84258 0.90106 1.20804 1.00258 0.92120 1.15105 1.20668 0.92104 0.97647 0.90779 1.20349 0.93527 0.94519 1.18152 1.23564 0.90190 0.90891 0.72903 1.90747 1.16961 1.89574 1.32610 1.19039 0.82965 0.92338 0.87479 1.86352 1.13614 1.31111 1.85189 1.21958 0.89492 0.84888 1.04261 1.22319 0.88101 0.85122 0.80261 1.90657 1.79762 1.22797 1.48483 1.83833 1.17590 1.34373 1.76200 1.21325 0.76814 0.95079 1.52443 0.88386 1.25342 1.00239 0.94431 0.96138 1.69999 1.34689 0.98972 1.46661 0.85575 0.80162 0.79184 0.78114 1.18840 1.20127 1.20120 1.20528 0.92817 0.98106 1.16995 0.92290 0.88006 0.92283 0.84924 0.84247 0.88760 0.88563 0.88571 0.92071 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.80 101.05 0.99 1.14 16 2 O -0.31 -3.31 10.48 -18.71 -0.20 -3.51 16 3 C 0.20 2.31 6.69 -39.01 -0.26 2.05 16 4 C -0.26 -2.43 8.96 -39.85 -0.36 -2.78 16 5 C 0.01 0.06 9.73 -39.51 -0.38 -0.33 16 6 C -0.26 -3.49 5.88 -104.94 -0.62 -4.11 16 7 C 0.37 5.03 11.43 34.05 0.39 5.42 16 8 O -0.43 -8.55 15.98 -16.43 -0.26 -8.81 16 9 C 0.23 3.69 6.70 -38.60 -0.26 3.43 16 10 O -0.25 -5.10 7.74 -48.80 -0.38 -5.47 16 11 C 0.07 1.37 5.33 36.01 0.19 1.57 16 12 C 0.40 10.43 7.98 36.01 0.29 10.72 16 13 O -0.52 -15.47 15.74 -25.78 -0.41 -15.87 16 14 O -0.21 -6.20 9.75 -20.72 -0.20 -6.40 16 15 C -0.38 -11.55 9.64 30.92 0.30 -11.25 16 16 H 0.10 3.02 6.86 -52.49 -0.36 2.66 16 17 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 18 N -0.87 -25.58 13.67 55.48 0.76 -24.82 16 19 Si 0.95 21.72 29.55 -169.99 -5.02 16.69 16 20 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.27 -3.67 8.97 -39.33 -0.35 -4.02 16 24 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.28 7.64 -51.93 -0.40 -0.12 16 27 H 0.13 0.81 6.26 -52.49 -0.33 0.48 16 28 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.10 1.63 7.66 -51.93 -0.40 1.23 16 31 H 0.10 1.63 7.66 -51.93 -0.40 1.23 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.15 1.95 6.30 -52.49 -0.33 1.62 16 LS Contribution 303.43 15.07 4.57 4.57 Total: -1.00 -38.78 303.43 -4.32 -43.10 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -3.01 Total: -2.44 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.17 Total: 2.95 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.76 Total: -24.82 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.44 Total: -40.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -38.78 -4.32 -43.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734631615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.191 kcal (2) G-P(sol) polarization free energy of solvation -38.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds