Wall clock time and date at job start Tue Mar 31 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47187 * 2 1 4 4 O 1.45202 * 109.47186 * 119.99810 * 2 1 3 5 5 C 1.34755 * 117.00195 * 270.00000 * 4 2 1 6 6 O 1.21511 * 119.99909 * 0.02562 * 5 4 2 7 7 C 1.47395 * 120.00341 * 179.97438 * 5 4 2 8 8 C 1.39735 * 120.20046 * 0.02562 * 7 5 4 9 9 C 1.37807 * 119.91117 * 180.22904 * 8 7 5 10 10 C 1.38587 * 120.33217 * 359.46959 * 9 8 7 11 11 C 1.38024 * 120.41255 * 0.55154 * 10 9 8 12 12 C 1.38828 * 120.07899 * 359.70769 * 11 10 9 13 13 O 1.35515 * 120.16719 * 180.02562 * 12 11 10 14 14 C 1.34813 * 116.99495 * 354.39563 * 13 12 11 15 15 H 1.07998 * 120.00301 * 5.06623 * 14 13 12 16 16 C 1.38706 * 119.99428 * 185.06552 * 14 13 12 17 17 N 1.31517 * 120.00175 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99739 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46651 * 60.00563 * 18 16 14 20 20 H 1.48500 * 109.46954 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47136 * 300.00317 * 18 16 14 22 22 C 1.50701 * 109.47209 * 239.99863 * 2 1 3 23 23 O 1.20828 * 119.99975 * 244.99570 * 22 2 1 24 24 O 1.34225 * 120.00080 * 64.99818 * 22 2 1 25 25 H 1.09001 * 109.47486 * 60.00125 * 1 2 3 26 26 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47222 * 299.99701 * 1 2 3 28 28 H 1.07991 * 120.04046 * 359.95214 * 8 7 5 29 29 H 1.07994 * 119.82995 * 179.74165 * 9 8 7 30 30 H 1.07995 * 119.79709 * 180.28030 * 10 9 8 31 31 H 1.08009 * 119.96138 * 179.72375 * 11 10 9 32 32 H 0.96998 * 119.99817 * 179.97438 * 17 16 14 33 33 H 0.96701 * 117.00433 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0670 2.2854 6 8 1.9969 1.2614 2.2547 7 6 2.7080 -0.5601 3.5260 8 6 2.9631 -1.9334 3.5662 9 6 3.4167 -2.5143 4.7306 10 6 3.6321 -1.7414 5.8606 11 6 3.3843 -0.3838 5.8362 12 6 2.9219 0.2183 4.6738 13 8 2.6785 1.5511 4.6477 14 6 2.7936 2.2172 5.8141 15 1 3.1479 1.7044 6.6961 16 6 2.4571 3.5611 5.8814 17 7 2.0252 4.1854 4.8074 18 14 2.6160 4.4840 7.4978 19 1 4.0289 4.4447 7.9533 20 1 2.1977 5.8958 7.3049 21 1 1.7484 3.8453 8.5197 22 6 2.0323 -0.7104 -1.2304 23 8 2.6507 -1.7428 -1.1218 24 8 1.7928 -0.1964 -2.4470 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.8007 -2.5394 2.6872 29 1 3.6094 -3.5765 4.7614 30 1 3.9920 -2.2048 6.7672 31 1 3.5505 0.2109 6.7224 32 1 1.7896 5.1252 4.8546 33 1 2.1352 -0.6875 -3.2064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737720353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:58 Heat of formation + Delta-G solvation = -170.382512 kcal Electronic energy + Delta-G solvation = -21545.265662 eV Core-core repulsion = 17923.562650 eV Total energy + Delta-G solvation = -3621.703011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60734 -39.73757 -38.70785 -36.47908 -36.28654 -35.67806 -32.45491 -32.09475 -30.46407 -29.00548 -25.61525 -25.29784 -23.70115 -21.90087 -21.16019 -20.08564 -18.32481 -18.11164 -17.60110 -16.96655 -16.61598 -15.96844 -15.42102 -15.11433 -14.69562 -14.45151 -14.05562 -13.82437 -13.69632 -13.36890 -12.99957 -12.70044 -12.53394 -12.19458 -11.79537 -11.66379 -11.56302 -11.37688 -11.17380 -10.94551 -10.85245 -10.59204 -10.52561 -10.25302 -9.85889 -9.35894 -8.96518 -8.36923 -7.42510 -6.55449 -4.15107 1.53596 2.08051 2.27931 2.31718 3.06660 3.08862 3.11251 3.32739 3.55175 3.85637 4.49925 4.85533 4.91197 4.97281 5.08978 5.09474 5.31391 5.55090 5.61084 5.68633 5.77492 6.01122 6.07832 6.10321 6.32509 6.52563 6.60886 6.79851 6.88842 7.04960 7.18312 7.24461 7.62089 7.76721 7.83077 8.55167 8.84652 9.52736 10.58142 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.005270 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.800219 B = 5311.843108 C = 6628.160458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 H 0.123 0.877 4 O -0.342 6.342 5 C 0.501 3.499 6 O -0.472 6.472 7 C -0.217 4.217 8 C -0.013 4.013 9 C -0.234 4.234 10 C -0.042 4.042 11 C -0.239 4.239 12 C 0.192 3.808 13 O -0.125 6.125 14 C -0.403 4.403 15 H 0.096 0.904 16 C 0.046 3.954 17 N -0.832 5.832 18 Si 0.943 3.057 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.268 1.268 22 C 0.485 3.515 23 O -0.495 6.495 24 O -0.511 6.511 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.274 0.726 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 -8.062 -6.657 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.140 0.860 4 O -0.261 6.261 5 C 0.346 3.654 6 O -0.358 6.358 7 C -0.220 4.220 8 C -0.031 4.031 9 C -0.253 4.253 10 C -0.060 4.060 11 C -0.258 4.258 12 C 0.132 3.868 13 O -0.023 6.023 14 C -0.478 4.478 15 H 0.114 0.886 16 C -0.163 4.163 17 N -0.463 5.463 18 Si 0.767 3.233 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.192 1.192 22 C 0.325 3.675 23 O -0.381 6.381 24 O -0.323 6.323 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.380 -7.287 -6.581 9.916 hybrid contribution 0.379 0.153 0.262 0.486 sum -1.001 -7.134 -6.319 9.582 Atomic orbital electron populations 1.22131 0.91108 1.03755 1.04866 1.21648 0.96146 0.97458 0.80620 0.85960 1.86647 1.78742 1.41647 1.19070 1.21226 0.75829 0.85479 0.82818 1.91007 1.47033 1.14850 1.82922 1.17913 1.19875 0.93628 0.90533 1.21023 0.92316 0.92226 0.97577 1.20557 1.11394 0.99324 0.93981 1.20987 0.94455 0.93261 0.97303 1.21104 1.10048 0.95543 0.99069 1.19204 0.90924 0.84915 0.91720 1.84134 1.71245 1.13167 1.33715 1.21496 1.46393 0.93074 0.86884 0.88640 1.25417 0.95688 0.95864 0.99306 1.70098 1.37082 1.11059 1.28060 0.85755 0.79254 0.78488 0.79810 1.19267 1.20083 1.19246 1.23016 0.76550 0.83340 0.84547 1.90741 1.36992 1.23400 1.86936 1.84487 1.74959 1.56369 1.16525 0.89706 0.91190 0.89746 0.85543 0.86874 0.86876 0.84749 0.91621 0.72768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.53 37.15 0.35 -1.74 16 2 C 0.10 1.54 3.09 -27.89 -0.09 1.45 16 3 H 0.12 1.99 7.16 -51.93 -0.37 1.62 16 4 O -0.34 -6.52 8.67 -47.32 -0.41 -6.93 16 5 C 0.50 11.25 7.86 34.46 0.27 11.52 16 6 O -0.47 -12.22 14.43 -26.59 -0.38 -12.60 16 7 C -0.22 -4.83 5.89 -104.83 -0.62 -5.45 16 8 C -0.01 -0.24 9.61 -39.18 -0.38 -0.62 16 9 C -0.23 -3.94 10.02 -39.61 -0.40 -4.34 16 10 C -0.04 -0.72 10.03 -39.53 -0.40 -1.12 16 11 C -0.24 -5.00 9.16 -39.44 -0.36 -5.36 16 12 C 0.19 4.69 6.66 -38.58 -0.26 4.43 16 13 O -0.12 -3.56 7.84 -21.04 -0.16 -3.73 16 14 C -0.40 -11.02 9.49 30.91 0.29 -10.73 16 15 H 0.10 2.35 5.21 -52.49 -0.27 2.08 16 16 C 0.05 1.23 5.49 -17.51 -0.10 1.13 16 17 N -0.83 -24.19 13.67 55.48 0.76 -23.43 16 18 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C 0.48 6.79 7.66 36.01 0.28 7.07 16 23 O -0.49 -8.39 17.27 -25.39 -0.44 -8.83 16 24 O -0.51 -5.07 13.42 -39.25 -0.53 -5.60 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.13 2.12 7.61 -52.49 -0.40 1.72 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.41 2.10 9.10 45.56 0.41 2.52 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -34.38 304.23 -5.17 -39.55 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -2.17 Total: 5.93 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.39 Total: -3.75 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.76 Total: -23.43 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.92 Total: -37.68 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.38 -5.17 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737720353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.830 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds