Wall clock time and date at job start Tue Mar 31 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47187 * 2 1 4 4 O 1.45202 * 109.47186 * 119.99810 * 2 1 3 5 5 C 1.34755 * 117.00195 * 270.00000 * 4 2 1 6 6 O 1.21511 * 119.99909 * 0.02562 * 5 4 2 7 7 C 1.47395 * 120.00341 * 179.97438 * 5 4 2 8 8 C 1.39735 * 120.20046 * 0.02562 * 7 5 4 9 9 C 1.37807 * 119.91117 * 180.22904 * 8 7 5 10 10 C 1.38587 * 120.33217 * 359.46959 * 9 8 7 11 11 C 1.38024 * 120.41255 * 0.55154 * 10 9 8 12 12 C 1.38828 * 120.07899 * 359.70769 * 11 10 9 13 13 O 1.35515 * 120.16719 * 180.02562 * 12 11 10 14 14 C 1.34813 * 116.99495 * 354.39563 * 13 12 11 15 15 H 1.07998 * 120.00301 * 5.06623 * 14 13 12 16 16 C 1.38706 * 119.99428 * 185.06552 * 14 13 12 17 17 N 1.31517 * 120.00175 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99739 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46651 * 60.00563 * 18 16 14 20 20 H 1.48500 * 109.46954 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47136 * 300.00317 * 18 16 14 22 22 C 1.50701 * 109.47209 * 239.99863 * 2 1 3 23 23 O 1.20828 * 119.99975 * 244.99570 * 22 2 1 24 24 O 1.34225 * 120.00080 * 64.99818 * 22 2 1 25 25 H 1.09001 * 109.47486 * 60.00125 * 1 2 3 26 26 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47222 * 299.99701 * 1 2 3 28 28 H 1.07991 * 120.04046 * 359.95214 * 8 7 5 29 29 H 1.07994 * 119.82995 * 179.74165 * 9 8 7 30 30 H 1.07995 * 119.79709 * 180.28030 * 10 9 8 31 31 H 1.08009 * 119.96138 * 179.72375 * 11 10 9 32 32 H 0.96998 * 119.99817 * 179.97438 * 17 16 14 33 33 H 0.96701 * 117.00433 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0670 2.2854 6 8 1.9969 1.2614 2.2547 7 6 2.7080 -0.5601 3.5260 8 6 2.9631 -1.9334 3.5662 9 6 3.4167 -2.5143 4.7306 10 6 3.6321 -1.7414 5.8606 11 6 3.3843 -0.3838 5.8362 12 6 2.9219 0.2183 4.6738 13 8 2.6785 1.5511 4.6477 14 6 2.7936 2.2172 5.8141 15 1 3.1479 1.7044 6.6961 16 6 2.4571 3.5611 5.8814 17 7 2.0252 4.1854 4.8074 18 14 2.6160 4.4840 7.4978 19 1 4.0289 4.4447 7.9533 20 1 2.1977 5.8958 7.3049 21 1 1.7484 3.8453 8.5197 22 6 2.0323 -0.7104 -1.2304 23 8 2.6507 -1.7428 -1.1218 24 8 1.7928 -0.1964 -2.4470 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.8007 -2.5394 2.6872 29 1 3.6094 -3.5765 4.7614 30 1 3.9920 -2.2048 6.7672 31 1 3.5505 0.2109 6.7224 32 1 1.7896 5.1252 4.8546 33 1 2.1352 -0.6875 -3.2064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737720353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:58 Heat of formation + Delta-G solvation = -193.749421 kcal Electronic energy + Delta-G solvation = -21546.278927 eV Core-core repulsion = 17923.562650 eV Total energy + Delta-G solvation = -3622.716277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99212 -41.20985 -40.35172 -38.16034 -37.60774 -37.09456 -34.37017 -33.43158 -32.00078 -30.65345 -27.47976 -26.57187 -25.22793 -23.48153 -22.55857 -21.59481 -19.91884 -19.68701 -18.97031 -18.44305 -18.17555 -17.31222 -16.95452 -16.52405 -16.34818 -16.15685 -15.55832 -15.47262 -15.27569 -14.63511 -14.50826 -14.29510 -13.97733 -13.57019 -13.39390 -13.04007 -12.79964 -12.73271 -12.70451 -12.52735 -12.40878 -12.15407 -12.02612 -11.66836 -11.54038 -11.12542 -10.84046 -9.95222 -9.13748 -8.48117 -6.18971 -0.09274 0.67483 0.93529 1.03644 1.35142 1.47476 1.52469 1.65559 2.15038 2.23577 2.81181 3.13574 3.34554 3.64957 3.69249 3.84287 4.04526 4.10546 4.24200 4.47036 4.51231 4.57869 4.64876 4.90499 5.00124 5.04367 5.11025 5.21119 5.42473 5.45570 5.56961 5.65160 5.92940 6.10095 6.80218 6.86446 6.92057 7.69797 8.71532 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.005270 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.800219 B = 5311.843108 C = 6628.160458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 H 0.110 0.890 4 O -0.338 6.338 5 C 0.504 3.496 6 O -0.518 6.518 7 C -0.238 4.238 8 C -0.014 4.014 9 C -0.204 4.204 10 C -0.024 4.024 11 C -0.254 4.254 12 C 0.160 3.840 13 O -0.184 6.184 14 C -0.429 4.429 15 H 0.112 0.888 16 C -0.017 4.017 17 N -0.901 5.901 18 Si 1.022 2.978 19 H -0.254 1.254 20 H -0.274 1.274 21 H -0.253 1.253 22 C 0.503 3.497 23 O -0.526 6.526 24 O -0.493 6.493 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.134 0.866 32 H 0.273 0.727 33 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -11.216 -6.101 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 H 0.128 0.872 4 O -0.256 6.256 5 C 0.351 3.649 6 O -0.407 6.407 7 C -0.240 4.240 8 C -0.032 4.032 9 C -0.223 4.223 10 C -0.042 4.042 11 C -0.273 4.273 12 C 0.105 3.895 13 O -0.086 6.086 14 C -0.504 4.504 15 H 0.129 0.871 16 C -0.218 4.218 17 N -0.536 5.536 18 Si 0.841 3.159 19 H -0.178 1.178 20 H -0.199 1.199 21 H -0.177 1.177 22 C 0.344 3.656 23 O -0.414 6.414 24 O -0.308 6.308 25 H 0.133 0.867 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.167 0.833 29 H 0.181 0.819 30 H 0.180 0.820 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -0.778 -10.528 -6.068 12.177 hybrid contribution 0.238 0.707 -0.125 0.756 sum -0.541 -9.822 -6.193 11.624 Atomic orbital electron populations 1.22125 0.88961 1.04804 1.05228 1.22003 0.98024 0.96983 0.80351 0.87198 1.86586 1.78447 1.41250 1.19345 1.21414 0.74784 0.84959 0.83728 1.90993 1.48984 1.16878 1.83848 1.18374 1.20252 0.95352 0.90069 1.21370 0.91787 0.90506 0.99523 1.21203 1.07135 1.01600 0.92321 1.21540 0.91834 0.91471 0.99382 1.21306 1.10598 0.97462 0.97944 1.19911 0.91322 0.84506 0.93784 1.84137 1.74757 1.15154 1.34568 1.22056 1.47011 0.93834 0.87491 0.87082 1.26759 0.94982 0.96612 1.03409 1.70278 1.40827 1.11408 1.31111 0.84611 0.79968 0.76680 0.74678 1.17796 1.19859 1.17734 1.22435 0.75681 0.82390 0.85057 1.90735 1.38481 1.24695 1.87538 1.84423 1.74330 1.56075 1.15957 0.86685 0.89711 0.92029 0.83306 0.81868 0.82018 0.84812 0.91770 0.69758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.53 71.98 0.69 -3.26 16 2 C 0.08 2.62 3.09 29.85 0.09 2.71 16 3 H 0.11 3.78 7.16 -2.38 -0.02 3.76 16 4 O -0.34 -13.05 8.67 -50.27 -0.44 -13.49 16 5 C 0.50 23.64 7.86 70.23 0.55 24.20 16 6 O -0.52 -28.86 14.43 26.79 0.39 -28.47 16 7 C -0.24 -10.75 5.89 -20.00 -0.12 -10.87 16 8 C -0.01 -0.48 9.61 22.53 0.22 -0.26 16 9 C -0.20 -5.82 10.02 22.25 0.22 -5.60 16 10 C -0.02 -0.74 10.03 22.30 0.22 -0.52 16 11 C -0.25 -10.42 9.16 22.36 0.20 -10.22 16 12 C 0.16 8.08 6.66 22.92 0.15 8.24 16 13 O -0.18 -11.25 7.84 0.91 0.01 -11.25 16 14 C -0.43 -24.76 9.49 67.93 0.64 -24.11 16 15 H 0.11 5.68 5.21 -2.91 -0.02 5.66 16 16 C -0.02 -0.99 5.49 84.85 0.47 -0.52 16 17 N -0.90 -56.34 13.67 21.62 0.30 -56.05 16 18 Si 1.02 42.13 29.55 68.60 2.03 44.16 16 19 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 21 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 22 C 0.50 13.42 7.66 71.24 0.55 13.97 16 23 O -0.53 -17.09 17.27 28.31 0.49 -16.60 16 24 O -0.49 -8.57 13.42 -51.37 -0.69 -9.26 16 25 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.15 4.48 7.61 -2.92 -0.02 4.45 16 29 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.13 5.41 5.64 -2.91 -0.02 5.39 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.44 3.08 9.10 -74.06 -0.67 2.41 16 Total: -1.00 -82.84 304.23 6.47 -76.37 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.50 Total: 20.82 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 3.89 Total: -6.24 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.30 Total: -56.05 kcal Atomic # 8 Polarization: -78.82 SS G_CDS: -0.24 Total: -79.06 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -82.84 6.47 -76.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737720353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.380 kcal (2) G-P(sol) polarization free energy of solvation -82.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds