Wall clock time and date at job start Tue Mar 31 2020 01:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.35005 * 120.00016 * 95.00076 * 3 2 1 5 5 C 1.46136 * 120.00106 * 180.02562 * 4 3 2 6 6 O 1.21679 * 120.00047 * 359.97438 * 5 4 3 7 7 O 1.34889 * 120.00100 * 179.97438 * 5 4 3 8 8 C 1.34809 * 116.99880 * 180.02562 * 7 5 4 9 9 H 1.07998 * 119.99848 * 359.97438 * 8 7 5 10 10 C 1.38861 * 119.99896 * 180.02562 * 8 7 5 11 11 N 1.31394 * 119.99822 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 119.99914 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47271 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47124 * 119.99690 * 12 10 8 15 15 H 1.48504 * 109.46919 * 239.99647 * 12 10 8 16 16 C 1.47142 * 120.00066 * 275.00244 * 3 2 1 17 17 C 1.39894 * 120.16959 * 64.72615 * 16 3 2 18 18 C 1.37866 * 119.84844 * 179.67769 * 17 16 3 19 19 C 1.38414 * 120.19178 * 0.62215 * 18 17 16 20 20 C 1.38506 * 120.33385 * 359.67309 * 19 18 17 21 21 Cl 1.73599 * 119.92300 * 180.02562 * 20 19 18 22 22 C 1.38018 * 120.14858 * 0.02562 * 20 19 18 23 23 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 24 24 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 27 27 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 28 28 H 1.08001 * 120.00151 * 0.02562 * 4 3 2 29 29 H 0.96999 * 119.99594 * 180.02562 * 11 10 8 30 30 H 1.08007 * 120.07370 * 359.97438 * 17 16 3 31 31 H 1.08009 * 119.90620 * 180.31439 * 18 17 16 32 32 H 1.07991 * 119.83223 * 179.69783 * 19 18 17 33 33 H 1.08002 * 120.09299 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3534 2.0233 1.1647 5 6 2.8399 3.4013 1.1648 6 8 2.9561 4.0055 0.1151 7 8 3.1602 4.0034 2.3286 8 6 3.6021 5.2751 2.2583 9 1 3.6865 5.7652 1.2997 10 6 3.9499 5.9543 3.4185 11 7 3.8477 5.3577 4.5847 12 14 4.5615 7.7166 3.3213 13 1 4.5840 8.1552 1.9027 14 1 3.6544 8.5989 4.0983 15 1 5.9329 7.7964 3.8855 16 6 2.1728 2.1515 -1.2694 17 6 1.0424 2.4497 -2.0378 18 6 1.1809 3.1404 -3.2229 19 6 2.4357 3.5280 -3.6601 20 6 3.5608 3.2315 -2.9085 21 17 5.1293 3.7232 -3.4667 22 6 3.4376 2.5460 -1.7170 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.2507 1.4869 2.0965 29 1 4.0903 5.8323 5.3951 30 1 0.0629 2.1436 -1.7010 31 1 0.3083 3.3755 -3.8143 32 1 2.5380 4.0645 -4.5916 33 1 4.3154 2.3157 -1.1315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745754204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:02 Heat of formation + Delta-G solvation = -67.474573 kcal Electronic energy + Delta-G solvation = -19188.515042 eV Core-core repulsion = 16011.983618 eV Total energy + Delta-G solvation = -3176.531424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21116 -40.05901 -37.82447 -37.15347 -36.28378 -34.30005 -32.25618 -31.46292 -30.86031 -27.72336 -25.68434 -23.81620 -23.42218 -22.52614 -19.97464 -19.81114 -18.74215 -17.62237 -16.80268 -16.57809 -16.29546 -16.18858 -15.96655 -15.34658 -14.98673 -14.61460 -14.47044 -14.14882 -13.71623 -13.66710 -13.38213 -13.13978 -12.88079 -12.49316 -12.38442 -12.37497 -12.19971 -12.13703 -11.98243 -11.87859 -11.56570 -11.08674 -10.70863 -10.31663 -9.60725 -9.33626 -8.55821 -6.30792 -0.13427 0.31021 0.59528 1.19651 1.31294 1.36318 1.49587 2.11814 2.21435 2.70838 2.88923 3.01690 3.52007 3.93035 4.05914 4.10163 4.22588 4.34950 4.45584 4.54310 4.57352 4.77587 4.81983 4.88638 4.95613 5.11248 5.13932 5.21862 5.33397 5.40383 5.41208 5.52964 5.58562 5.83427 5.92246 6.71989 6.90040 7.81768 8.65696 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.006175 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.406286 B = 4533.217440 C = 5963.548182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C 0.007 3.993 4 C -0.183 4.183 5 C 0.416 3.584 6 O -0.556 6.556 7 O -0.247 6.247 8 C -0.409 4.409 9 H 0.080 0.920 10 C -0.006 4.006 11 N -0.903 5.903 12 Si 1.014 2.986 13 H -0.267 1.267 14 H -0.258 1.258 15 H -0.260 1.260 16 C -0.045 4.045 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.052 4.052 21 Cl -0.085 7.085 22 C -0.062 4.062 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.278 0.722 30 H 0.150 0.850 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 -9.648 -13.551 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C 0.006 3.994 4 C -0.201 4.201 5 C 0.266 3.734 6 O -0.455 6.455 7 O -0.156 6.156 8 C -0.485 4.485 9 H 0.097 0.903 10 C -0.206 4.206 11 N -0.541 5.541 12 Si 0.833 3.167 13 H -0.191 1.191 14 H -0.182 1.182 15 H -0.184 1.184 16 C -0.046 4.046 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.078 4.078 21 Cl -0.056 7.056 22 C -0.081 4.081 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.168 0.832 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.183 0.817 32 H 0.167 0.833 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.131 -9.408 -13.620 17.652 hybrid contribution 0.909 1.089 0.433 1.483 sum -5.222 -8.318 -13.187 16.443 Atomic orbital electron populations 1.21824 0.92629 1.03574 1.02441 1.20774 0.97692 0.88476 1.04926 1.21455 0.91444 0.96632 0.89903 1.22246 1.06361 0.91288 1.00250 1.22002 0.79194 0.89805 0.82381 1.90726 1.54916 1.67469 1.32378 1.83973 1.69928 1.28381 1.33344 1.21406 1.45031 0.86684 0.95362 0.90276 1.26517 0.96114 1.04787 0.93210 1.70061 1.45771 1.39590 0.98647 0.84618 0.78705 0.74343 0.79024 1.19091 1.18231 1.18414 1.18839 0.93157 0.98553 0.94002 1.21581 0.97971 0.98540 0.94468 1.21315 0.97313 0.97643 0.96551 1.21329 0.91030 1.00582 1.00563 1.20854 0.86912 1.03051 0.97019 1.98329 1.27524 1.90622 1.89109 1.20830 0.97333 0.96471 0.93443 0.92937 0.91843 0.89555 0.88845 0.88784 0.83173 0.91221 0.83235 0.81671 0.83326 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.84 71.98 0.71 -1.67 16 2 C -0.08 -1.61 6.08 29.85 0.18 -1.43 16 3 C 0.01 0.20 4.76 -18.27 -0.09 0.12 16 4 C -0.18 -7.02 9.79 23.58 0.23 -6.79 16 5 C 0.42 21.57 7.70 69.87 0.54 22.11 16 6 O -0.56 -30.05 11.45 19.25 0.22 -29.83 16 7 O -0.25 -15.13 9.75 10.18 0.10 -15.03 16 8 C -0.41 -25.58 9.65 67.97 0.66 -24.92 16 9 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 10 C -0.01 -0.37 5.50 84.91 0.47 0.10 16 11 N -0.90 -54.73 13.67 21.64 0.30 -54.44 16 12 Si 1.01 44.93 29.55 68.60 2.03 46.95 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 15 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 16 C -0.05 -1.48 3.84 -20.15 -0.08 -1.56 16 17 C -0.11 -2.90 9.51 22.58 0.21 -2.68 16 18 C -0.11 -2.66 10.03 22.22 0.22 -2.44 16 19 C -0.12 -3.20 9.82 22.38 0.22 -2.98 16 20 C -0.05 -1.74 6.31 22.28 0.14 -1.60 16 21 Cl -0.08 -2.70 28.95 -2.72 -0.08 -2.78 16 22 C -0.06 -2.27 6.74 22.61 0.15 -2.12 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.97 6.01 -2.39 -0.01 0.95 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.63 8.03 -2.39 -0.02 1.62 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.15 5.12 8.04 -2.91 -0.02 5.10 16 29 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.15 3.16 6.20 -2.91 -0.02 3.15 16 31 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.15 3.27 8.06 -2.92 -0.02 3.25 16 33 H 0.10 4.03 8.05 -2.91 -0.02 4.00 16 Total: -1.00 -75.57 306.29 7.26 -68.31 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.13 Total: 12.68 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 3.57 Total: -25.87 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.30 Total: -54.44 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: 0.32 Total: -44.86 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.08 Total: -2.78 kcal Total: -75.57 7.26 -68.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745754204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.840 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds