Wall clock time and date at job start Tue Mar 31 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47452 * 2 1 4 4 C 1.35002 * 120.00440 * 92.77524 * 3 2 1 5 5 C 1.46137 * 119.99765 * 352.10086 * 4 3 2 6 6 O 1.21674 * 119.99954 * 353.67499 * 5 4 3 7 7 O 1.34891 * 120.00006 * 173.67530 * 5 4 3 8 8 C 1.34803 * 117.00009 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00100 * 359.72326 * 8 7 5 10 10 C 1.38853 * 119.99826 * 180.02562 * 8 7 5 11 11 N 1.31399 * 120.00196 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00015 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47297 * 59.99565 * 12 10 8 14 14 H 1.48503 * 109.47317 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47014 * 299.99669 * 12 10 8 16 16 C 1.47146 * 119.99356 * 272.77551 * 3 2 1 17 17 C 1.39901 * 120.16569 * 64.72482 * 16 3 2 18 18 C 1.37868 * 119.84475 * 179.76130 * 17 16 3 19 19 C 1.38408 * 120.18991 * 0.51455 * 18 17 16 20 20 C 1.38505 * 120.34033 * 359.73385 * 19 18 17 21 21 Cl 1.73601 * 119.92696 * 180.02562 * 20 19 18 22 22 C 1.38024 * 120.14678 * 0.02562 * 20 19 18 23 23 H 1.09006 * 109.46882 * 300.00715 * 1 2 3 24 24 H 1.08995 * 109.47155 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47233 * 239.99505 * 2 1 3 27 27 H 1.09007 * 109.47189 * 119.99742 * 2 1 3 28 28 H 1.07994 * 120.00335 * 172.09925 * 4 3 2 29 29 H 0.97000 * 119.99756 * 180.02562 * 11 10 8 30 30 H 1.08001 * 120.07798 * 359.97438 * 17 16 3 31 31 H 1.08000 * 119.90310 * 180.22943 * 18 17 16 32 32 H 1.08006 * 119.83213 * 179.71773 * 19 18 17 33 33 H 1.08000 * 120.09229 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3108 2.0384 1.1677 5 6 1.9644 1.3969 2.4343 6 8 1.3234 0.3627 2.4371 7 8 2.3553 1.9514 3.6002 8 6 2.0024 1.3094 4.7318 9 1 1.4284 0.3962 4.6781 10 6 2.3717 1.8257 5.9668 11 7 3.0655 2.9396 6.0324 12 14 1.8834 0.9357 7.5349 13 1 2.4636 -0.4313 7.5295 14 1 2.3958 1.6857 8.7098 15 1 0.4032 0.8450 7.6121 16 6 2.2194 2.1348 -1.2729 17 6 1.1179 2.4227 -2.0860 18 6 1.3002 3.0964 -3.2749 19 6 2.5702 3.4788 -3.6706 20 6 3.6668 3.1933 -2.8742 21 17 5.2548 3.6785 -3.3807 22 6 3.4998 2.5238 -1.6788 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.7896 3.0064 1.1659 29 1 3.3237 3.3000 6.8952 30 1 0.1267 2.1209 -1.7813 31 1 0.4501 3.3224 -3.9015 32 1 2.7068 4.0023 -4.6054 33 1 4.3555 2.3020 -1.0583 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745754206.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:05 Heat of formation + Delta-G solvation = -50.684626 kcal Electronic energy + Delta-G solvation = -18655.041383 eV Core-core repulsion = 15479.238026 eV Total energy + Delta-G solvation = -3175.803357 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67606 -38.88448 -36.75472 -36.01901 -34.28078 -32.20888 -31.31172 -30.56134 -29.60167 -25.80465 -24.18497 -22.77357 -22.57647 -20.97263 -18.67455 -17.80498 -16.75075 -16.52996 -15.57075 -15.47849 -14.83233 -14.51355 -14.37734 -14.18892 -13.84965 -13.50947 -13.13806 -12.89799 -12.44460 -12.00950 -11.93866 -11.70167 -11.53339 -11.50290 -11.27676 -11.03248 -10.78166 -10.70191 -10.48645 -10.11870 -9.84772 -9.19896 -8.93843 -8.73754 -8.60494 -8.48628 -6.46460 -4.08587 0.90095 1.09233 1.72038 2.02192 3.15974 3.16672 3.20755 3.46802 3.93325 4.00617 4.42441 4.69283 4.84046 5.00241 5.06059 5.13022 5.25250 5.32937 5.44525 5.66701 5.80359 5.85412 5.92068 6.05121 6.13318 6.18998 6.31367 6.43021 6.57188 6.68023 6.73876 6.77652 7.10786 7.37829 7.91987 8.71802 9.01866 9.84346 10.71150 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.003847 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.337184 B = 7276.451836 C = 8128.310337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.042 4.042 4 C -0.134 4.134 5 C 0.418 3.582 6 O -0.546 6.546 7 O -0.207 6.207 8 C -0.374 4.374 9 H 0.097 0.903 10 C 0.041 3.959 11 N -0.859 5.859 12 Si 0.945 3.055 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.269 1.269 16 C -0.025 4.025 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.032 4.032 21 Cl -0.074 7.074 22 C -0.100 4.100 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.271 0.729 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 0.585 -17.691 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 C -0.044 4.044 4 C -0.153 4.153 5 C 0.268 3.732 6 O -0.446 6.446 7 O -0.114 6.114 8 C -0.450 4.450 9 H 0.115 0.885 10 C -0.164 4.164 11 N -0.495 5.495 12 Si 0.769 3.231 13 H -0.194 1.194 14 H -0.203 1.203 15 H -0.194 1.194 16 C -0.025 4.025 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.135 4.135 20 C -0.059 4.059 21 Cl -0.045 7.045 22 C -0.118 4.118 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.953 0.538 -17.531 17.565 hybrid contribution 0.062 -0.136 0.699 0.714 sum -0.891 0.402 -16.832 16.861 Atomic orbital electron populations 1.21605 0.94677 1.01343 1.01314 1.20877 0.96821 0.91561 1.03437 1.20795 0.97430 0.95934 0.90192 1.22188 1.02114 1.01003 0.90038 1.20737 0.82175 0.84738 0.85549 1.90601 1.41404 1.24818 1.87774 1.83959 1.64798 1.49429 1.13195 1.21244 1.34887 1.08241 0.80663 0.88493 1.25399 0.96116 0.96216 0.98704 1.69970 1.34421 1.18757 1.26349 0.85721 0.79183 0.79009 0.79146 1.19402 1.20337 1.19412 1.18870 0.92476 0.96987 0.94168 1.21487 0.98876 0.97776 0.93752 1.21025 0.96551 0.98317 0.96605 1.21099 0.91405 1.01080 0.99894 1.20808 0.86396 1.02179 0.96491 1.98370 1.24746 1.90498 1.90895 1.21335 0.97597 0.97852 0.95041 0.91402 0.94143 0.92993 0.92812 0.87226 0.85442 0.91865 0.84837 0.84944 0.85113 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.45 37.16 0.35 -1.65 16 2 C -0.09 -1.46 5.29 -27.88 -0.15 -1.61 16 3 C -0.04 -0.69 4.73 -102.16 -0.48 -1.17 16 4 C -0.13 -2.59 9.76 -37.56 -0.37 -2.96 16 5 C 0.42 10.22 7.67 33.90 0.26 10.48 16 6 O -0.55 -13.68 11.00 -19.40 -0.21 -13.89 16 7 O -0.21 -5.93 9.75 -21.93 -0.21 -6.15 16 8 C -0.37 -10.93 9.65 30.96 0.30 -10.64 16 9 H 0.10 2.81 6.86 -52.49 -0.36 2.45 16 10 C 0.04 1.13 5.50 -17.51 -0.10 1.03 16 11 N -0.86 -25.02 13.67 55.49 0.76 -24.27 16 12 Si 0.95 21.03 29.55 -169.99 -5.02 16.01 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 16 C -0.02 -0.34 5.32 -105.06 -0.56 -0.90 16 17 C -0.10 -1.18 9.61 -39.09 -0.38 -1.55 16 18 C -0.11 -1.04 10.03 -39.65 -0.40 -1.44 16 19 C -0.12 -1.17 9.82 -39.42 -0.39 -1.56 16 20 C -0.03 -0.38 6.31 -39.56 -0.25 -0.63 16 21 Cl -0.07 -0.82 28.95 -51.86 -1.50 -2.32 16 22 C -0.10 -1.30 9.51 -39.06 -0.37 -1.67 16 23 H 0.07 1.21 6.93 -51.93 -0.36 0.85 16 24 H 0.04 0.50 6.16 -51.93 -0.32 0.18 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.11 2.11 5.60 -51.93 -0.29 1.82 16 28 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.13 1.43 6.27 -52.49 -0.33 1.10 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -30.99 305.52 -7.44 -38.43 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.33 Total: 1.83 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.52 Total: -14.25 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.76 Total: -24.27 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.43 Total: -20.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.99 -7.44 -38.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745754206.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.251 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds