Wall clock time and date at job start Tue Mar 31 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47452 * 2 1 4 4 C 1.35002 * 120.00440 * 92.77524 * 3 2 1 5 5 C 1.46137 * 119.99765 * 352.10086 * 4 3 2 6 6 O 1.21674 * 119.99954 * 353.67499 * 5 4 3 7 7 O 1.34891 * 120.00006 * 173.67530 * 5 4 3 8 8 C 1.34803 * 117.00009 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00100 * 359.72326 * 8 7 5 10 10 C 1.38853 * 119.99826 * 180.02562 * 8 7 5 11 11 N 1.31399 * 120.00196 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00015 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47297 * 59.99565 * 12 10 8 14 14 H 1.48503 * 109.47317 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47014 * 299.99669 * 12 10 8 16 16 C 1.47146 * 119.99356 * 272.77551 * 3 2 1 17 17 C 1.39901 * 120.16569 * 64.72482 * 16 3 2 18 18 C 1.37868 * 119.84475 * 179.76130 * 17 16 3 19 19 C 1.38408 * 120.18991 * 0.51455 * 18 17 16 20 20 C 1.38505 * 120.34033 * 359.73385 * 19 18 17 21 21 Cl 1.73601 * 119.92696 * 180.02562 * 20 19 18 22 22 C 1.38024 * 120.14678 * 0.02562 * 20 19 18 23 23 H 1.09006 * 109.46882 * 300.00715 * 1 2 3 24 24 H 1.08995 * 109.47155 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47233 * 239.99505 * 2 1 3 27 27 H 1.09007 * 109.47189 * 119.99742 * 2 1 3 28 28 H 1.07994 * 120.00335 * 172.09925 * 4 3 2 29 29 H 0.97000 * 119.99756 * 180.02562 * 11 10 8 30 30 H 1.08001 * 120.07798 * 359.97438 * 17 16 3 31 31 H 1.08000 * 119.90310 * 180.22943 * 18 17 16 32 32 H 1.08006 * 119.83213 * 179.71773 * 19 18 17 33 33 H 1.08000 * 120.09229 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3108 2.0384 1.1677 5 6 1.9644 1.3969 2.4343 6 8 1.3234 0.3627 2.4371 7 8 2.3553 1.9514 3.6002 8 6 2.0024 1.3094 4.7318 9 1 1.4284 0.3962 4.6781 10 6 2.3717 1.8257 5.9668 11 7 3.0655 2.9396 6.0324 12 14 1.8834 0.9357 7.5349 13 1 2.4636 -0.4313 7.5295 14 1 2.3958 1.6857 8.7098 15 1 0.4032 0.8450 7.6121 16 6 2.2194 2.1348 -1.2729 17 6 1.1179 2.4227 -2.0860 18 6 1.3002 3.0964 -3.2749 19 6 2.5702 3.4788 -3.6706 20 6 3.6668 3.1933 -2.8742 21 17 5.2548 3.6785 -3.3807 22 6 3.4998 2.5238 -1.6788 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.7896 3.0064 1.1659 29 1 3.3237 3.3000 6.8952 30 1 0.1267 2.1209 -1.7813 31 1 0.4501 3.3224 -3.9015 32 1 2.7068 4.0023 -4.6054 33 1 4.3555 2.3020 -1.0583 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745754206.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:05 Heat of formation + Delta-G solvation = -67.097666 kcal Electronic energy + Delta-G solvation = -18655.753106 eV Core-core repulsion = 15479.238026 eV Total energy + Delta-G solvation = -3176.515080 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19043 -40.31018 -38.03259 -37.38298 -35.89443 -34.30758 -32.40520 -31.54923 -30.93896 -27.72400 -25.72295 -23.86425 -23.57297 -22.56996 -20.10177 -19.89585 -18.38054 -17.77234 -16.75985 -16.66253 -16.42704 -16.28711 -16.11271 -15.60377 -14.79812 -14.70496 -14.39328 -14.24722 -13.95596 -13.61161 -13.36530 -13.17805 -12.88354 -12.58697 -12.46333 -12.42071 -12.17632 -12.07882 -11.96205 -11.86073 -11.68403 -10.73055 -10.57169 -10.42685 -9.89908 -9.62679 -8.54417 -6.30783 -0.19873 0.18084 0.39008 1.11350 1.33964 1.42156 1.50473 2.12702 2.14678 2.55026 2.84311 3.01925 3.59591 3.85114 3.87904 4.07159 4.16220 4.30121 4.37360 4.51454 4.57075 4.65067 4.69873 4.86118 4.98233 5.10733 5.16083 5.19507 5.23105 5.29908 5.40236 5.44842 5.63451 5.76698 5.84620 6.69495 6.90408 7.79886 8.66654 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.003847 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.337184 B = 7276.451836 C = 8128.310337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C 0.016 3.984 4 C -0.181 4.181 5 C 0.423 3.577 6 O -0.556 6.556 7 O -0.247 6.247 8 C -0.416 4.416 9 H 0.086 0.914 10 C -0.008 4.008 11 N -0.904 5.904 12 Si 1.019 2.981 13 H -0.261 1.261 14 H -0.261 1.261 15 H -0.260 1.260 16 C -0.054 4.054 17 C -0.099 4.099 18 C -0.095 4.095 19 C -0.104 4.104 20 C -0.042 4.042 21 Cl -0.071 7.071 22 C -0.109 4.109 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.279 0.721 30 H 0.145 0.855 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 0.514 -20.320 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 C 0.015 3.985 4 C -0.200 4.200 5 C 0.274 3.726 6 O -0.456 6.456 7 O -0.156 6.156 8 C -0.491 4.491 9 H 0.104 0.896 10 C -0.208 4.208 11 N -0.542 5.542 12 Si 0.838 3.162 13 H -0.185 1.185 14 H -0.185 1.185 15 H -0.184 1.184 16 C -0.054 4.054 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.069 4.069 21 Cl -0.042 7.042 22 C -0.127 4.127 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.189 0.811 32 H 0.176 0.824 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.053 0.461 -20.194 20.303 hybrid contribution 0.385 -0.151 1.110 1.185 sum -1.668 0.309 -19.084 19.159 Atomic orbital electron populations 1.21548 0.93287 1.02315 1.01261 1.20939 0.97965 0.91281 1.03237 1.21123 0.91387 0.95392 0.90583 1.22007 1.07107 1.02274 0.88628 1.21676 0.80524 0.84259 0.86157 1.90582 1.41503 1.25322 1.88184 1.83983 1.66666 1.50708 1.14212 1.21450 1.36907 1.08914 0.81878 0.89606 1.26612 0.95378 0.96905 1.01873 1.70068 1.35894 1.20488 1.27708 0.84663 0.79232 0.77947 0.74374 1.18510 1.18515 1.18448 1.18731 0.93871 0.99253 0.93544 1.21658 0.98448 0.97604 0.93964 1.21422 0.97579 0.96467 0.95842 1.21511 0.90896 0.99606 1.00256 1.20916 0.87239 1.02339 0.96375 1.98375 1.24715 1.90408 1.90717 1.21272 0.97135 0.98475 0.95851 0.94750 0.90768 0.91658 0.89669 0.90683 0.84767 0.91206 0.83694 0.81145 0.82382 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.45 71.98 0.68 -2.97 16 2 C -0.10 -3.08 5.29 29.85 0.16 -2.92 16 3 C 0.02 0.52 4.73 -18.27 -0.09 0.44 16 4 C -0.18 -7.30 9.76 23.58 0.23 -7.07 16 5 C 0.42 21.94 7.67 69.87 0.54 22.48 16 6 O -0.56 -29.38 11.00 19.27 0.21 -29.17 16 7 O -0.25 -15.12 9.75 10.23 0.10 -15.02 16 8 C -0.42 -25.67 9.65 67.97 0.66 -25.02 16 9 H 0.09 5.28 6.86 -2.91 -0.02 5.26 16 10 C -0.01 -0.44 5.50 84.90 0.47 0.02 16 11 N -0.90 -54.75 13.67 21.64 0.30 -54.46 16 12 Si 1.02 43.96 29.55 68.60 2.03 45.98 16 13 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 14 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 15 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 16 C -0.05 -1.37 5.32 -20.15 -0.11 -1.48 16 17 C -0.10 -1.94 9.61 22.58 0.22 -1.72 16 18 C -0.10 -1.38 10.03 22.22 0.22 -1.16 16 19 C -0.10 -1.66 9.82 22.37 0.22 -1.44 16 20 C -0.04 -0.88 6.31 22.28 0.14 -0.74 16 21 Cl -0.07 -1.44 28.95 -2.72 -0.08 -1.52 16 22 C -0.11 -2.68 9.51 22.61 0.21 -2.47 16 23 H 0.03 1.21 6.93 -2.38 -0.02 1.20 16 24 H 0.07 1.61 6.16 -2.39 -0.01 1.60 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 27 H 0.07 2.96 5.60 -2.38 -0.01 2.95 16 28 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 29 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.15 2.49 6.27 -2.91 -0.02 2.47 16 31 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -72.10 305.52 7.24 -64.86 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.14 Total: 13.37 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.55 Total: -24.06 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.30 Total: -54.46 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: 0.31 Total: -44.19 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -72.10 7.24 -64.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745754206.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.238 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds