Wall clock time and date at job start Tue Mar 31 2020 01:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99783 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99760 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 H 1.08996 * 110.32581 * 42.23217 * 12 10 9 14 14 C 1.54912 * 110.36224 * 279.99804 * 12 10 9 15 15 C 1.55160 * 101.57635 * 204.15146 * 14 12 10 16 16 C 1.54330 * 102.94439 * 35.50412 * 15 14 12 17 17 N 1.47025 * 107.26725 * 337.80370 * 16 15 14 18 18 C 1.34776 * 125.64288 * 178.97171 * 17 16 15 19 19 O 1.21285 * 119.99457 * 179.97438 * 18 17 16 20 20 C 1.50696 * 120.00345 * 359.96739 * 18 17 16 21 21 F 1.39907 * 109.47226 * 179.97438 * 20 18 17 22 22 F 1.39907 * 109.46927 * 299.99184 * 20 18 17 23 23 F 1.39895 * 109.47400 * 59.99545 * 20 18 17 24 24 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 26 26 H 1.08998 * 111.00349 * 322.22243 * 14 12 10 27 27 H 1.08997 * 111.00626 * 86.08396 * 14 12 10 28 28 H 1.08997 * 110.72019 * 153.86707 * 15 14 12 29 29 H 1.08996 * 110.72449 * 277.13813 * 15 14 12 30 30 H 1.08996 * 109.87936 * 97.22096 * 16 15 14 31 31 H 1.09002 * 109.88066 * 218.23680 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 1 0.3992 -4.8159 -0.6683 14 6 0.7551 -5.1964 1.4511 15 6 0.6099 -6.7395 1.3790 16 6 1.7767 -7.1539 0.4578 17 7 2.1411 -5.9753 -0.3420 18 6 3.1312 -5.9211 -1.2547 19 8 3.3434 -4.8909 -1.8587 20 6 3.9748 -7.1402 -1.5247 21 9 4.9281 -6.8403 -2.5038 22 9 4.6219 -7.5297 -0.3470 23 9 3.1574 -8.1827 -1.9744 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0068 26 1 1.4984 -4.9082 2.1945 27 1 -0.2048 -4.7229 1.6566 28 1 0.7226 -7.1840 2.3678 29 1 -0.3473 -7.0166 0.9374 30 1 2.6285 -7.4719 1.0588 31 1 1.4614 -7.9661 -0.1972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776354343.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:53 Heat of formation + Delta-G solvation = -208.559281 kcal Electronic energy + Delta-G solvation = -22958.358614 eV Core-core repulsion = 18825.436145 eV Total energy + Delta-G solvation = -4132.922470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.23937 -47.77154 -47.71117 -40.25004 -37.86209 -36.95904 -33.91298 -31.97140 -31.19144 -29.49255 -27.51263 -25.11749 -23.51391 -21.56846 -21.08020 -19.45551 -18.69218 -18.54484 -18.09035 -17.48404 -16.81916 -16.04648 -15.10213 -14.75084 -14.52980 -14.48716 -14.26094 -14.12557 -14.00896 -13.85704 -13.84345 -13.73629 -13.63343 -13.19471 -12.89213 -12.49021 -12.05041 -11.57137 -11.45460 -11.37285 -11.03218 -10.80102 -10.43076 -10.22133 -9.96778 -9.44769 -8.93653 -8.21185 -7.95085 -6.41801 -3.81762 2.01345 2.22714 3.05909 3.21199 3.26712 3.32078 3.65899 3.83583 4.07268 4.19492 4.27415 4.47456 4.66244 4.81253 4.93276 5.21997 5.29900 5.41227 5.55081 5.68040 5.83741 5.86913 6.03374 6.19857 6.36942 7.25573 7.56061 7.83987 8.04103 8.60026 9.17735 9.50994 10.02774 10.75780 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.005454 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.585905 B = 5132.878779 C = 5903.041658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.296 4.296 8 H 0.102 0.898 9 N -0.556 5.556 10 C 0.439 3.561 11 O -0.568 6.568 12 C 0.126 3.874 13 H 0.094 0.906 14 C -0.120 4.120 15 C -0.126 4.126 16 C 0.086 3.914 17 N -0.584 5.584 18 C 0.496 3.504 19 O -0.432 6.432 20 C 0.454 3.546 21 F -0.156 7.156 22 F -0.170 7.170 23 F -0.174 7.174 24 H 0.272 0.728 25 H 0.392 0.608 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 -16.051 1.920 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.425 4.425 8 H 0.120 0.880 9 N -0.193 5.193 10 C 0.223 3.777 11 O -0.450 6.450 12 C 0.019 3.981 13 H 0.111 0.889 14 C -0.158 4.158 15 C -0.164 4.164 16 C -0.036 4.036 17 N -0.320 5.320 18 C 0.274 3.726 19 O -0.299 6.299 20 C 0.395 3.605 21 F -0.137 7.137 22 F -0.151 7.151 23 F -0.156 7.156 24 H 0.082 0.918 25 H 0.225 0.775 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.463 -15.305 1.492 15.385 hybrid contribution 0.008 0.513 -0.071 0.518 sum -0.454 -14.792 1.421 14.867 Atomic orbital electron populations 1.69600 1.05895 1.28277 1.50574 1.25241 0.95644 0.99663 0.97270 0.85915 0.78778 0.80409 0.79122 1.19871 1.20939 1.19915 1.19650 0.93354 0.82056 1.47447 0.87989 1.41722 1.09024 1.04317 1.64206 1.19552 0.88385 0.84420 0.85342 1.90571 1.13433 1.86518 1.54522 1.21918 0.91691 0.87244 0.97203 0.88869 1.22775 1.02909 0.95159 0.94994 1.22619 0.97734 0.96207 0.99852 1.22334 0.99081 0.87863 0.94350 1.47906 1.32268 1.13411 1.38460 1.19560 0.81899 0.88064 0.83092 1.90979 1.64980 1.27596 1.46363 1.20440 0.80236 0.84541 0.75244 1.93244 1.64872 1.93087 1.62504 1.93222 1.82681 1.91855 1.47362 1.93202 1.72300 1.60613 1.89456 0.91813 0.77498 0.89699 0.88661 0.89455 0.90010 0.90558 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.47 6.21 -10.98 -0.07 10.40 16 11 O -0.57 -15.85 13.35 -18.52 -0.25 -16.10 16 12 C 0.13 2.17 3.56 -67.57 -0.24 1.93 16 13 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 14 C -0.12 -1.55 6.49 -24.58 -0.16 -1.71 16 15 C -0.13 -1.16 6.95 -24.89 -0.17 -1.33 16 16 C 0.09 0.97 6.05 -3.06 -0.02 0.95 16 17 N -0.58 -9.58 3.14 -164.35 -0.52 -10.10 16 18 C 0.50 9.38 6.64 -10.99 -0.07 9.31 16 19 O -0.43 -10.32 14.00 -18.51 -0.26 -10.57 16 20 C 0.45 7.02 2.94 36.00 0.11 7.13 16 21 F -0.16 -2.58 16.92 2.25 0.04 -2.54 16 22 F -0.17 -2.47 16.21 2.25 0.04 -2.43 16 23 F -0.17 -2.28 16.27 2.25 0.04 -2.24 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 26 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.82 7.37 -51.93 -0.38 0.44 16 31 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 LS Contribution 281.95 15.07 4.25 4.25 Total: -1.00 -33.58 281.95 -4.60 -38.18 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -2.71 Total: 4.37 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -0.87 Total: 18.72 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.15 Total: -47.96 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.51 Total: -26.67 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.58 -4.60 -38.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776354343.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.381 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds