Wall clock time and date at job start Tue Mar 31 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99783 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99760 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 H 1.08996 * 110.32581 * 42.23217 * 12 10 9 14 14 C 1.54912 * 110.36224 * 279.99804 * 12 10 9 15 15 C 1.55160 * 101.57635 * 204.15146 * 14 12 10 16 16 C 1.54330 * 102.94439 * 35.50412 * 15 14 12 17 17 N 1.47025 * 107.26725 * 337.80370 * 16 15 14 18 18 C 1.34776 * 125.64288 * 178.97171 * 17 16 15 19 19 O 1.21285 * 119.99457 * 179.97438 * 18 17 16 20 20 C 1.50696 * 120.00345 * 359.96739 * 18 17 16 21 21 F 1.39907 * 109.47226 * 179.97438 * 20 18 17 22 22 F 1.39907 * 109.46927 * 299.99184 * 20 18 17 23 23 F 1.39895 * 109.47400 * 59.99545 * 20 18 17 24 24 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 26 26 H 1.08998 * 111.00349 * 322.22243 * 14 12 10 27 27 H 1.08997 * 111.00626 * 86.08396 * 14 12 10 28 28 H 1.08997 * 110.72019 * 153.86707 * 15 14 12 29 29 H 1.08996 * 110.72449 * 277.13813 * 15 14 12 30 30 H 1.08996 * 109.87936 * 97.22096 * 16 15 14 31 31 H 1.09002 * 109.88066 * 218.23680 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 1 0.3992 -4.8159 -0.6683 14 6 0.7551 -5.1964 1.4511 15 6 0.6099 -6.7395 1.3790 16 6 1.7767 -7.1539 0.4578 17 7 2.1411 -5.9753 -0.3420 18 6 3.1312 -5.9211 -1.2547 19 8 3.3434 -4.8909 -1.8587 20 6 3.9748 -7.1402 -1.5247 21 9 4.9281 -6.8403 -2.5038 22 9 4.6219 -7.5297 -0.3470 23 9 3.1574 -8.1827 -1.9744 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0068 26 1 1.4984 -4.9082 2.1945 27 1 -0.2048 -4.7229 1.6566 28 1 0.7226 -7.1840 2.3678 29 1 -0.3473 -7.0166 0.9374 30 1 2.6285 -7.4719 1.0588 31 1 1.4614 -7.9661 -0.1972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776354343.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:52 Heat of formation + Delta-G solvation = -232.417138 kcal Electronic energy + Delta-G solvation = -22959.393169 eV Core-core repulsion = 18825.436145 eV Total energy + Delta-G solvation = -4133.957024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.47540 -48.98508 -48.95103 -41.68393 -39.60652 -38.40308 -35.96222 -33.48255 -32.93203 -30.76656 -28.79162 -27.01751 -24.83321 -22.81173 -22.33437 -20.98549 -20.19747 -19.92035 -19.66313 -19.03449 -18.21198 -17.53273 -16.80559 -16.17568 -16.00825 -15.77348 -15.74039 -15.48561 -15.44924 -15.37691 -15.09767 -15.07580 -14.97879 -14.43372 -14.14547 -14.11043 -13.52554 -13.32695 -12.98491 -12.64211 -12.46604 -12.29145 -12.14145 -11.70298 -11.59033 -11.33951 -10.50015 -10.03383 -9.83998 -8.48624 -5.96577 0.66088 0.82950 1.36704 1.38840 1.49536 1.80054 2.02407 2.26886 2.42877 2.83546 3.01593 3.14700 3.17152 3.53751 3.61013 4.04811 4.14175 4.30543 4.44513 4.66125 4.78588 4.83158 5.04463 5.13449 5.30421 5.38778 5.92626 5.98108 6.44474 6.60201 7.11088 7.51394 8.09242 8.68415 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.005454 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.585905 B = 5132.878779 C = 5903.041658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.989 3.011 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.071 0.929 9 N -0.566 5.566 10 C 0.434 3.566 11 O -0.613 6.613 12 C 0.124 3.876 13 H 0.113 0.887 14 C -0.115 4.115 15 C -0.107 4.107 16 C 0.072 3.928 17 N -0.581 5.581 18 C 0.482 3.518 19 O -0.499 6.499 20 C 0.472 3.528 21 F -0.163 7.163 22 F -0.161 7.161 23 F -0.153 7.153 24 H 0.279 0.721 25 H 0.398 0.602 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 -17.725 2.892 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.208 4.208 3 Si 0.813 3.187 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.089 0.911 9 N -0.203 5.203 10 C 0.221 3.779 11 O -0.499 6.499 12 C 0.018 3.982 13 H 0.131 0.869 14 C -0.154 4.154 15 C -0.144 4.144 16 C -0.048 4.048 17 N -0.316 5.316 18 C 0.262 3.738 19 O -0.372 6.372 20 C 0.413 3.587 21 F -0.145 7.145 22 F -0.142 7.142 23 F -0.135 7.135 24 H 0.088 0.912 25 H 0.232 0.768 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.056 -17.039 2.506 17.344 hybrid contribution 0.470 0.955 -0.350 1.121 sum -1.586 -16.084 2.156 16.305 Atomic orbital electron populations 1.69644 1.06557 1.29394 1.50077 1.25951 0.96586 1.02076 0.96221 0.85054 0.77893 0.77002 0.78756 1.20415 1.18902 1.19600 1.19530 0.92416 0.84132 1.50173 0.91119 1.41744 1.09160 1.04322 1.65065 1.20724 0.88282 0.86175 0.82737 1.90535 1.15891 1.87650 1.55799 1.22036 0.91265 0.84039 1.00883 0.86918 1.22812 1.02956 0.98647 0.90977 1.22683 0.98065 0.92482 1.01205 1.22820 1.00489 0.86577 0.94898 1.48198 1.31062 1.14728 1.37582 1.20182 0.82375 0.88372 0.82876 1.90945 1.67080 1.30210 1.48968 1.19760 0.79741 0.83818 0.75339 1.93231 1.65136 1.93232 1.62871 1.93243 1.82459 1.91613 1.46909 1.93244 1.71698 1.59308 1.89227 0.91159 0.76826 0.91697 0.86643 0.86434 0.87106 0.89835 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 2 C -0.01 -0.45 5.50 84.92 0.47 0.02 16 3 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.33 -19.57 9.68 84.04 0.81 -18.75 16 8 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 9 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 10 C 0.43 21.37 6.21 87.66 0.54 21.92 16 11 O -0.61 -35.98 13.35 19.94 0.27 -35.71 16 12 C 0.12 4.18 3.56 44.72 0.16 4.33 16 13 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 14 C -0.12 -2.70 6.49 31.99 0.21 -2.49 16 15 C -0.11 -1.44 6.95 31.79 0.22 -1.22 16 16 C 0.07 1.36 6.05 86.73 0.52 1.89 16 17 N -0.58 -18.33 3.14 -792.26 -2.49 -20.82 16 18 C 0.48 18.34 6.64 87.66 0.58 18.93 16 19 O -0.50 -24.95 14.00 19.96 0.28 -24.67 16 20 C 0.47 14.17 2.94 71.23 0.21 14.38 16 21 F -0.16 -5.42 16.92 44.97 0.76 -4.66 16 22 F -0.16 -4.44 16.21 44.97 0.73 -3.71 16 23 F -0.15 -3.64 16.27 44.97 0.73 -2.91 16 24 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 25 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 26 H 0.06 1.79 8.05 -2.39 -0.02 1.77 16 27 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.50 7.37 -2.39 -0.02 1.48 16 31 H 0.11 1.46 7.48 -2.39 -0.02 1.44 16 Total: -1.00 -77.60 281.95 5.16 -72.44 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.46 Total: 15.34 kcal Atomic # 6 Polarization: 35.28 SS G_CDS: 3.73 Total: 39.00 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -3.83 Total: -101.28 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: 0.55 Total: -60.38 kcal Atomic # 9 Polarization: -13.51 SS G_CDS: 2.22 Total: -11.29 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.60 5.16 -72.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776354343.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.978 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds