Wall clock time and date at job start Tue Mar 31 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47439 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46977 * 300.00143 * 3 2 1 6 6 H 1.48502 * 109.47436 * 59.99727 * 3 2 1 7 7 C 1.38948 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00375 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99843 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00429 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99633 * 180.02562 * 10 9 7 13 13 H 1.09004 * 110.00131 * 319.64012 * 12 10 9 14 14 C 1.54316 * 109.88408 * 80.74146 * 12 10 9 15 15 C 1.55160 * 102.94268 * 141.60946 * 14 12 10 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 14 12 17 17 N 1.47026 * 109.88038 * 198.55253 * 12 10 9 18 18 C 1.34771 * 125.65100 * 61.37441 * 17 12 10 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 12 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 12 21 21 F 1.39908 * 109.46830 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.46809 * 299.99813 * 20 18 17 23 23 F 1.39894 * 109.47074 * 59.99877 * 20 18 17 24 24 H 0.97000 * 119.99499 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99736 * 0.02562 * 9 7 2 26 26 H 1.08997 * 110.72381 * 259.97204 * 14 12 10 27 27 H 1.09002 * 110.72355 * 23.24609 * 14 12 10 28 28 H 1.08991 * 111.00600 * 82.57442 * 15 14 12 29 29 H 1.09004 * 111.00084 * 206.38888 * 15 14 12 30 30 H 1.09001 * 110.36852 * 278.17238 * 16 15 14 31 31 H 1.08998 * 110.36449 * 155.84885 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0011 12 6 1.2435 -4.8630 0.0022 13 1 0.3814 -4.7954 0.6658 14 6 0.7783 -5.2010 -1.4298 15 6 0.9751 -6.7383 -1.5053 16 6 2.2544 -6.9303 -0.6531 17 7 2.1288 -5.9513 0.4420 18 6 2.7305 -6.0369 1.6449 19 8 2.5589 -5.1668 2.4721 20 6 3.6165 -7.2140 1.9622 21 9 4.1225 -7.0805 3.2597 22 9 2.8726 -8.3954 1.8715 23 9 4.6763 -7.2591 1.0501 24 1 -0.4849 0.8401 -0.0004 25 1 0.3532 -2.3906 0.0016 26 1 -0.2710 -4.9394 -1.5664 27 1 1.4019 -4.6958 -2.1674 28 1 0.1284 -7.2627 -1.0626 29 1 1.1378 -7.0612 -2.5336 30 1 3.1424 -6.7205 -1.2494 31 1 2.2954 -7.9435 -0.2534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776354349.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:55 Heat of formation + Delta-G solvation = -211.991920 kcal Electronic energy + Delta-G solvation = -22877.082456 eV Core-core repulsion = 18744.011136 eV Total energy + Delta-G solvation = -4133.071320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.30066 -47.83291 -47.75766 -40.29756 -38.11900 -36.91149 -33.96847 -32.05399 -31.24923 -29.52615 -27.58401 -25.15524 -23.60575 -21.55860 -21.15855 -19.45684 -18.75105 -18.63286 -18.12413 -17.61725 -16.90375 -16.17599 -15.15146 -14.86224 -14.61553 -14.57416 -14.22887 -14.19090 -14.10052 -13.89077 -13.88384 -13.75292 -13.59885 -13.16648 -12.86772 -12.63913 -12.19621 -11.62131 -11.41200 -11.34540 -11.08550 -10.84840 -10.36131 -10.27610 -10.15171 -9.56998 -9.12633 -8.24026 -8.02239 -6.46104 -3.86613 1.90401 2.08669 3.00611 3.14335 3.25851 3.33485 3.58109 3.77740 4.02522 4.15042 4.20508 4.43325 4.66605 4.77303 4.92688 5.22360 5.28336 5.39891 5.54096 5.70294 5.78152 5.86231 5.97207 6.22534 6.28881 7.16475 7.52086 7.66706 7.99848 8.53895 9.12544 9.46224 9.96431 10.71277 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.005330 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.005254 B = 5251.689506 C = 5899.889646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.552 5.552 10 C 0.435 3.565 11 O -0.583 6.583 12 C 0.126 3.874 13 H 0.094 0.906 14 C -0.119 4.119 15 C -0.127 4.127 16 C 0.085 3.915 17 N -0.571 5.571 18 C 0.500 3.500 19 O -0.464 6.464 20 C 0.456 3.544 21 F -0.155 7.155 22 F -0.173 7.173 23 F -0.165 7.165 24 H 0.272 0.728 25 H 0.393 0.607 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -15.853 -2.570 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.187 5.187 10 C 0.219 3.781 11 O -0.467 6.467 12 C 0.019 3.981 13 H 0.112 0.888 14 C -0.157 4.157 15 C -0.165 4.165 16 C -0.037 4.037 17 N -0.305 5.305 18 C 0.279 3.721 19 O -0.335 6.335 20 C 0.398 3.602 21 F -0.136 7.136 22 F -0.154 7.154 23 F -0.147 7.147 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.194 -15.216 -2.015 15.350 hybrid contribution 0.049 0.637 0.111 0.649 sum 0.243 -14.579 -1.904 14.705 Atomic orbital electron populations 1.69616 1.05947 1.28209 1.50191 1.25274 0.95658 0.99774 0.97064 0.85784 0.79749 0.80975 0.77759 1.19197 1.20672 1.20636 1.19761 0.93424 0.82046 1.47534 0.87846 1.41792 1.09172 1.04424 1.63339 1.19769 0.88415 0.84623 0.85284 1.90537 1.13568 1.86724 1.55900 1.21624 0.92227 0.87146 0.97084 0.88825 1.22647 1.02968 0.95687 0.94398 1.22761 0.96851 0.96355 1.00552 1.22688 1.00135 0.92274 0.88643 1.47913 1.46604 1.23696 1.12301 1.19617 0.82183 0.86762 0.83490 1.90904 1.58922 1.37357 1.46321 1.20276 0.80523 0.83675 0.75771 1.93248 1.87591 1.95702 1.37086 1.93202 1.76369 1.50019 1.95847 1.93255 1.58357 1.96474 1.66565 0.91805 0.77380 0.88828 0.89473 0.90090 0.89128 0.89884 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 9 N -0.55 -14.01 5.29 -10.96 -0.06 -14.07 16 10 C 0.43 10.34 6.21 -10.98 -0.07 10.28 16 11 O -0.58 -16.12 15.69 5.55 0.09 -16.04 16 12 C 0.13 2.20 3.26 -68.11 -0.22 1.97 16 13 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 14 C -0.12 -1.52 6.47 -24.90 -0.16 -1.68 16 15 C -0.13 -1.19 7.09 -24.58 -0.17 -1.37 16 16 C 0.08 1.00 6.21 -2.53 -0.02 0.99 16 17 N -0.57 -9.47 2.76 -164.32 -0.45 -9.92 16 18 C 0.50 9.27 6.78 -10.98 -0.07 9.20 16 19 O -0.46 -10.54 16.40 5.56 0.09 -10.45 16 20 C 0.46 6.94 2.92 36.01 0.10 7.04 16 21 F -0.16 -2.48 16.92 2.25 0.04 -2.45 16 22 F -0.17 -2.18 15.77 2.25 0.04 -2.14 16 23 F -0.17 -2.45 16.74 2.25 0.04 -2.41 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.24 7.84 -51.93 -0.41 0.83 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.81 6.47 -51.93 -0.34 0.47 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -33.38 286.00 -3.75 -37.13 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -2.69 Total: 4.98 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: -0.85 Total: 18.47 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.21 Total: -47.54 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: 0.18 Total: -26.49 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.11 Total: -7.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.38 -3.75 -37.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776354349.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.863 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds