Wall clock time and date at job start Tue Mar 31 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47439 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46977 * 300.00143 * 3 2 1 6 6 H 1.48502 * 109.47436 * 59.99727 * 3 2 1 7 7 C 1.38948 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00375 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99843 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00429 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99633 * 180.02562 * 10 9 7 13 13 H 1.09004 * 110.00131 * 319.64012 * 12 10 9 14 14 C 1.54316 * 109.88408 * 80.74146 * 12 10 9 15 15 C 1.55160 * 102.94268 * 141.60946 * 14 12 10 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 14 12 17 17 N 1.47026 * 109.88038 * 198.55253 * 12 10 9 18 18 C 1.34771 * 125.65100 * 61.37441 * 17 12 10 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 12 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 12 21 21 F 1.39908 * 109.46830 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.46809 * 299.99813 * 20 18 17 23 23 F 1.39894 * 109.47074 * 59.99877 * 20 18 17 24 24 H 0.97000 * 119.99499 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99736 * 0.02562 * 9 7 2 26 26 H 1.08997 * 110.72381 * 259.97204 * 14 12 10 27 27 H 1.09002 * 110.72355 * 23.24609 * 14 12 10 28 28 H 1.08991 * 111.00600 * 82.57442 * 15 14 12 29 29 H 1.09004 * 111.00084 * 206.38888 * 15 14 12 30 30 H 1.09001 * 110.36852 * 278.17238 * 16 15 14 31 31 H 1.08998 * 110.36449 * 155.84885 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0011 12 6 1.2435 -4.8630 0.0022 13 1 0.3814 -4.7954 0.6658 14 6 0.7783 -5.2010 -1.4298 15 6 0.9751 -6.7383 -1.5053 16 6 2.2544 -6.9303 -0.6531 17 7 2.1288 -5.9513 0.4420 18 6 2.7305 -6.0369 1.6449 19 8 2.5589 -5.1668 2.4721 20 6 3.6165 -7.2140 1.9622 21 9 4.1225 -7.0805 3.2597 22 9 2.8726 -8.3954 1.8715 23 9 4.6763 -7.2591 1.0501 24 1 -0.4849 0.8401 -0.0004 25 1 0.3532 -2.3906 0.0016 26 1 -0.2710 -4.9394 -1.5664 27 1 1.4019 -4.6958 -2.1674 28 1 0.1284 -7.2627 -1.0626 29 1 1.1378 -7.0612 -2.5336 30 1 3.1424 -6.7205 -1.2494 31 1 2.2954 -7.9435 -0.2534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776354349.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:55 Heat of formation + Delta-G solvation = -236.627478 kcal Electronic energy + Delta-G solvation = -22878.150734 eV Core-core repulsion = 18744.011136 eV Total energy + Delta-G solvation = -4134.139598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.51924 -49.02170 -48.98918 -41.72594 -39.84863 -38.38960 -36.02068 -33.55913 -32.99636 -30.82452 -28.85285 -27.05490 -24.92936 -22.75523 -22.47817 -21.00241 -20.24783 -19.96010 -19.71534 -19.11319 -18.38073 -17.66375 -16.82269 -16.31407 -16.07956 -15.81839 -15.77150 -15.56708 -15.45428 -15.40814 -15.17201 -15.09714 -14.95881 -14.43586 -14.29211 -14.03944 -13.61577 -13.36219 -13.01302 -12.65442 -12.47403 -12.23555 -12.15348 -11.81168 -11.59152 -11.56431 -10.70824 -10.07834 -9.93041 -8.52121 -6.01238 0.52549 0.72857 1.32445 1.38714 1.52700 1.75246 1.95266 2.25157 2.36361 2.79632 2.95502 3.11598 3.12712 3.48652 3.57493 3.99362 4.10791 4.25831 4.45704 4.58482 4.69639 4.81717 5.02335 5.09091 5.28470 5.35920 5.84461 5.93259 6.28817 6.51906 7.05666 7.45770 8.00865 8.65090 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.005330 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.005254 B = 5251.689506 C = 5899.889646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.992 3.008 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.074 0.926 9 N -0.561 5.561 10 C 0.431 3.569 11 O -0.628 6.628 12 C 0.125 3.875 13 H 0.104 0.896 14 C -0.114 4.114 15 C -0.107 4.107 16 C 0.071 3.929 17 N -0.570 5.570 18 C 0.486 3.514 19 O -0.522 6.522 20 C 0.473 3.527 21 F -0.160 7.160 22 F -0.151 7.151 23 F -0.160 7.160 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -17.284 -3.775 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.092 0.908 9 N -0.197 5.197 10 C 0.218 3.782 11 O -0.516 6.516 12 C 0.019 3.981 13 H 0.121 0.879 14 C -0.152 4.152 15 C -0.145 4.145 16 C -0.049 4.049 17 N -0.302 5.302 18 C 0.267 3.733 19 O -0.397 6.397 20 C 0.415 3.585 21 F -0.141 7.141 22 F -0.132 7.132 23 F -0.142 7.142 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.138 0.862 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.142 0.858 30 H 0.098 0.902 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.901 -16.694 -3.266 17.034 hybrid contribution 0.381 1.031 0.462 1.192 sum -0.520 -15.663 -2.804 15.920 Atomic orbital electron populations 1.69660 1.06696 1.29443 1.49681 1.26020 0.96593 1.02290 0.95938 0.84893 0.77868 0.77096 0.78594 1.20196 1.18843 1.19660 1.19648 0.92529 0.84023 1.50333 0.90816 1.41830 1.09300 1.04505 1.64062 1.20913 0.88285 0.86288 0.82716 1.90494 1.15909 1.87836 1.57324 1.21721 0.91582 0.84168 1.00676 0.87857 1.22705 1.03849 0.98483 0.90176 1.22832 0.96155 0.93306 1.02168 1.23123 1.01677 0.92353 0.87733 1.48215 1.45349 1.23989 1.12616 1.20252 0.82266 0.87177 0.83625 1.90868 1.61050 1.39643 1.48180 1.19626 0.80091 0.83245 0.75538 1.93242 1.87611 1.95765 1.37507 1.93247 1.75840 1.48376 1.95731 1.93270 1.58063 1.96441 1.66408 0.91055 0.76802 0.86232 0.91216 0.87481 0.85808 0.90230 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.30 13.05 21.66 0.28 -49.02 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.34 -19.58 9.68 84.04 0.81 -18.77 16 8 H 0.07 4.66 7.16 -2.91 -0.02 4.63 16 9 N -0.56 -29.43 5.29 -306.98 -1.62 -31.05 16 10 C 0.43 21.15 6.21 87.66 0.54 21.69 16 11 O -0.63 -36.28 15.69 -3.07 -0.05 -36.33 16 12 C 0.13 4.31 3.26 44.59 0.15 4.45 16 13 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 14 C -0.11 -2.64 6.47 31.78 0.21 -2.43 16 15 C -0.11 -1.53 7.09 31.99 0.23 -1.30 16 16 C 0.07 1.48 6.21 86.86 0.54 2.02 16 17 N -0.57 -18.31 2.76 -792.18 -2.18 -20.49 16 18 C 0.49 18.05 6.78 87.66 0.59 18.65 16 19 O -0.52 -24.56 16.40 -3.02 -0.05 -24.61 16 20 C 0.47 13.94 2.92 71.24 0.21 14.14 16 21 F -0.16 -5.08 16.92 44.97 0.76 -4.32 16 22 F -0.15 -3.42 15.77 44.97 0.71 -2.71 16 23 F -0.16 -4.58 16.74 44.97 0.75 -3.82 16 24 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 25 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 26 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 28 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.70 6.47 -2.39 -0.02 1.69 16 Total: -1.00 -76.19 286.00 4.84 -71.35 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.47 Total: 16.86 kcal Atomic # 6 Polarization: 34.74 SS G_CDS: 3.74 Total: 38.49 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -3.53 Total: -100.57 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -0.10 Total: -60.94 kcal Atomic # 9 Polarization: -13.08 SS G_CDS: 2.22 Total: -10.86 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.19 4.84 -71.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776354349.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.276 kcal (2) G-P(sol) polarization free energy of solvation -76.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds