Wall clock time and date at job start Tue Mar 31 2020 01:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31159 * 1 3 3 Cl 1.73607 * 119.99686 * 2 1 4 4 C 1.50696 * 120.00425 * 180.02562 * 2 1 3 5 5 O 1.45197 * 109.47668 * 114.99495 * 4 2 1 6 6 C 1.34224 * 117.00446 * 179.97438 * 5 4 2 7 7 O 1.20830 * 119.99648 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.50708 * 109.47368 * 180.02562 * 8 6 5 10 10 C 1.37631 * 120.12797 * 265.00428 * 9 8 6 11 11 C 1.38617 * 120.24935 * 179.97438 * 10 9 8 12 12 C 1.38659 * 120.49753 * 0.02562 * 11 10 9 13 13 C 1.37591 * 120.24814 * 0.02562 * 12 11 10 14 14 C 1.40703 * 120.12406 * 84.72361 * 9 8 6 15 15 C 1.41394 * 120.24704 * 0.02562 * 14 9 8 16 16 H 1.07999 * 119.99576 * 333.89506 * 15 14 9 17 17 C 1.39936 * 120.00084 * 153.89383 * 15 14 9 18 18 N 1.30823 * 120.00218 * 343.71483 * 17 15 14 19 19 Si 1.86806 * 120.00088 * 163.71714 * 17 15 14 20 20 H 1.48497 * 109.46918 * 60.00210 * 19 17 15 21 21 H 1.48502 * 109.47252 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46900 * 300.00273 * 19 17 15 23 23 H 1.08001 * 119.99620 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.99977 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46840 * 354.99700 * 4 2 1 26 26 H 1.09006 * 109.46868 * 235.00197 * 4 2 1 27 27 H 1.09000 * 109.47361 * 300.00222 * 8 6 5 28 28 H 1.08997 * 109.47049 * 60.00152 * 8 6 5 29 29 H 1.08005 * 119.87632 * 359.97438 * 10 9 8 30 30 H 1.07993 * 119.74862 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.87354 * 180.02562 * 12 11 10 32 32 H 1.08008 * 120.12341 * 179.97438 * 13 12 11 33 33 H 0.97001 * 120.00340 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0652 -1.3050 -0.0006 5 8 2.8082 -1.4345 -1.2413 6 6 3.5383 -2.5493 -1.4010 7 8 3.5557 -3.3896 -0.5328 8 6 4.3364 -2.7531 -2.6629 9 6 5.0601 -4.0732 -2.5920 10 6 6.3630 -4.1240 -2.1515 11 6 7.0308 -5.3369 -2.0848 12 6 6.3963 -6.5111 -2.4606 13 6 5.0945 -6.4839 -2.9050 14 6 4.4043 -5.2592 -2.9703 15 6 3.0641 -5.2199 -3.4194 16 1 2.4102 -4.4227 -3.0981 17 6 2.5851 -6.2140 -4.2799 18 7 3.4255 -6.9856 -4.9201 19 14 0.7456 -6.4391 -4.5148 20 1 0.1582 -5.1857 -5.0523 21 1 0.5007 -7.5494 -5.4701 22 1 0.1157 -6.7609 -3.2091 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.3602 -2.1316 0.0887 26 1 2.7573 -1.3252 0.8413 27 1 3.6650 -2.7529 -3.5215 28 1 5.0615 -1.9462 -2.7685 29 1 6.8671 -3.2154 -1.8567 30 1 8.0529 -5.3674 -1.7376 31 1 6.9261 -7.4506 -2.4042 32 1 4.6023 -7.3997 -3.1976 33 1 3.0935 -7.6749 -5.5163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777167668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:59 Heat of formation + Delta-G solvation = -62.853250 kcal Electronic energy + Delta-G solvation = -18961.317281 eV Core-core repulsion = 15784.986253 eV Total energy + Delta-G solvation = -3176.331028 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98432 -37.73886 -36.99981 -35.89383 -33.67665 -33.56483 -31.83170 -29.51853 -27.77215 -26.30764 -25.01003 -21.28889 -20.95838 -20.36114 -19.34755 -17.22555 -17.15869 -16.68532 -16.04161 -15.47585 -14.85208 -14.52940 -14.21054 -13.77207 -13.64175 -12.95858 -12.61672 -12.50068 -12.32549 -11.89566 -11.75617 -11.59850 -11.23865 -11.13035 -11.03319 -10.94617 -10.75254 -10.44970 -10.40656 -9.85765 -9.54094 -9.45596 -9.37759 -9.20015 -7.38698 -7.36063 -6.78533 -4.40840 1.49104 2.05875 2.70692 2.87760 2.90454 3.03850 3.06638 3.24222 3.41161 3.90095 4.43359 4.62106 5.07282 5.24513 5.33115 5.53080 5.73946 5.80243 5.93280 5.97580 6.05210 6.24866 6.38926 6.46995 6.70533 6.88857 7.03445 7.24275 7.36470 7.58786 7.86175 7.99876 8.07933 8.25307 8.40405 8.59309 8.85200 8.95013 10.15397 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.005286 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.227030 B = 5295.638621 C = 6684.548146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.070 4.070 3 Cl -0.079 7.079 4 C 0.102 3.898 5 O -0.359 6.359 6 C 0.460 3.540 7 O -0.491 6.491 8 C -0.040 4.040 9 C -0.196 4.196 10 C -0.076 4.076 11 C -0.240 4.240 12 C -0.104 4.104 13 C -0.158 4.158 14 C 0.131 3.869 15 C -0.459 4.459 16 H 0.073 0.927 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.904 3.096 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.264 1.264 23 H 0.127 0.873 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 10.403 5.294 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 Cl -0.050 7.050 4 C 0.027 3.973 5 O -0.278 6.278 6 C 0.303 3.697 7 O -0.376 6.376 8 C -0.078 4.078 9 C -0.198 4.198 10 C -0.094 4.094 11 C -0.259 4.259 12 C -0.122 4.122 13 C -0.177 4.177 14 C 0.128 3.872 15 C -0.488 4.488 16 H 0.091 0.909 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.728 3.272 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 H 0.145 0.855 24 H 0.137 0.863 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.062 10.075 5.400 12.501 hybrid contribution -0.814 -0.124 0.021 0.824 sum -5.876 9.951 5.421 12.764 Atomic orbital electron populations 1.24149 0.93514 1.04243 0.97344 1.23045 0.93626 0.87411 1.05527 1.98377 1.78142 1.31698 1.96831 1.21883 0.95444 0.92953 0.86998 1.86621 1.58087 1.43696 1.39373 1.24577 0.77044 0.78007 0.90106 1.90650 1.60872 1.42870 1.43246 1.19995 0.97621 0.97679 0.92464 1.19057 0.94164 0.92208 1.14324 1.20331 0.94262 0.96107 0.98743 1.20320 0.99083 0.93246 1.13242 1.20706 0.95658 0.96145 0.99741 1.21305 0.94215 0.98374 1.03849 1.17342 0.92353 0.89975 0.87500 1.19449 0.96155 1.08770 1.24439 0.90872 1.25875 0.99918 0.94316 0.93871 1.69803 1.36494 1.15840 1.19539 0.86435 0.82829 0.78882 0.79052 1.18911 1.20215 1.18868 0.85481 0.86316 0.89210 0.89913 0.87365 0.89237 0.89509 0.89490 0.89436 0.86404 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 14.05 28.97 0.41 -1.00 16 2 C -0.07 -0.81 6.14 -36.07 -0.22 -1.03 16 3 Cl -0.08 -0.93 28.99 -51.86 -1.50 -2.43 16 4 C 0.10 1.42 5.78 36.00 0.21 1.63 16 5 O -0.36 -6.12 10.20 -39.24 -0.40 -6.53 16 6 C 0.46 9.18 7.57 36.00 0.27 9.45 16 7 O -0.49 -11.30 15.78 -18.75 -0.30 -11.60 16 8 C -0.04 -0.80 5.29 -29.03 -0.15 -0.96 16 9 C -0.20 -4.66 4.43 -103.91 -0.46 -5.12 16 10 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 11 C -0.24 -5.47 10.05 -39.29 -0.39 -5.87 16 12 C -0.10 -2.49 10.02 -39.66 -0.40 -2.89 16 13 C -0.16 -4.15 8.68 -38.88 -0.34 -4.49 16 14 C 0.13 3.44 5.56 -106.82 -0.59 2.84 16 15 C -0.46 -11.87 8.14 -37.75 -0.31 -12.17 16 16 H 0.07 1.84 6.67 -52.49 -0.35 1.49 16 17 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 18 N -0.79 -20.07 10.95 55.55 0.61 -19.46 16 19 Si 0.90 18.50 29.59 -169.99 -5.03 13.47 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 H 0.13 0.99 7.84 -52.49 -0.41 0.58 16 24 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 25 H 0.09 1.20 7.79 -51.93 -0.40 0.80 16 26 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 27 H 0.11 2.13 7.08 -51.93 -0.37 1.76 16 28 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 29 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.12 3.17 6.20 -52.48 -0.33 2.84 16 33 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -28.87 309.67 -7.93 -36.80 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.53 Total: 4.95 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.45 Total: -19.87 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.61 Total: -19.46 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.70 Total: -18.12 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.87 -7.93 -36.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777167668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.052 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds