Wall clock time and date at job start Tue Mar 31 2020 01:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31159 * 1 3 3 Cl 1.73607 * 119.99686 * 2 1 4 4 C 1.50696 * 120.00425 * 180.02562 * 2 1 3 5 5 O 1.45197 * 109.47668 * 114.99495 * 4 2 1 6 6 C 1.34224 * 117.00446 * 179.97438 * 5 4 2 7 7 O 1.20830 * 119.99648 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.50708 * 109.47368 * 180.02562 * 8 6 5 10 10 C 1.37631 * 120.12797 * 265.00428 * 9 8 6 11 11 C 1.38617 * 120.24935 * 179.97438 * 10 9 8 12 12 C 1.38659 * 120.49753 * 0.02562 * 11 10 9 13 13 C 1.37591 * 120.24814 * 0.02562 * 12 11 10 14 14 C 1.40703 * 120.12406 * 84.72361 * 9 8 6 15 15 C 1.41394 * 120.24704 * 0.02562 * 14 9 8 16 16 H 1.07999 * 119.99576 * 333.89506 * 15 14 9 17 17 C 1.39936 * 120.00084 * 153.89383 * 15 14 9 18 18 N 1.30823 * 120.00218 * 343.71483 * 17 15 14 19 19 Si 1.86806 * 120.00088 * 163.71714 * 17 15 14 20 20 H 1.48497 * 109.46918 * 60.00210 * 19 17 15 21 21 H 1.48502 * 109.47252 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46900 * 300.00273 * 19 17 15 23 23 H 1.08001 * 119.99620 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.99977 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46840 * 354.99700 * 4 2 1 26 26 H 1.09006 * 109.46868 * 235.00197 * 4 2 1 27 27 H 1.09000 * 109.47361 * 300.00222 * 8 6 5 28 28 H 1.08997 * 109.47049 * 60.00152 * 8 6 5 29 29 H 1.08005 * 119.87632 * 359.97438 * 10 9 8 30 30 H 1.07993 * 119.74862 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.87354 * 180.02562 * 12 11 10 32 32 H 1.08008 * 120.12341 * 179.97438 * 13 12 11 33 33 H 0.97001 * 120.00340 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0652 -1.3050 -0.0006 5 8 2.8082 -1.4345 -1.2413 6 6 3.5383 -2.5493 -1.4010 7 8 3.5557 -3.3896 -0.5328 8 6 4.3364 -2.7531 -2.6629 9 6 5.0601 -4.0732 -2.5920 10 6 6.3630 -4.1240 -2.1515 11 6 7.0308 -5.3369 -2.0848 12 6 6.3963 -6.5111 -2.4606 13 6 5.0945 -6.4839 -2.9050 14 6 4.4043 -5.2592 -2.9703 15 6 3.0641 -5.2199 -3.4194 16 1 2.4102 -4.4227 -3.0981 17 6 2.5851 -6.2140 -4.2799 18 7 3.4255 -6.9856 -4.9201 19 14 0.7456 -6.4391 -4.5148 20 1 0.1582 -5.1857 -5.0523 21 1 0.5007 -7.5494 -5.4701 22 1 0.1157 -6.7609 -3.2091 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.3602 -2.1316 0.0887 26 1 2.7573 -1.3252 0.8413 27 1 3.6650 -2.7529 -3.5215 28 1 5.0615 -1.9462 -2.7685 29 1 6.8671 -3.2154 -1.8567 30 1 8.0529 -5.3674 -1.7376 31 1 6.9261 -7.4506 -2.4042 32 1 4.6023 -7.3997 -3.1976 33 1 3.0935 -7.6749 -5.5163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777167668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:59 Heat of formation + Delta-G solvation = -76.473235 kcal Electronic energy + Delta-G solvation = -18961.907888 eV Core-core repulsion = 15784.986253 eV Total energy + Delta-G solvation = -3176.921635 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49096 -39.45942 -38.05845 -37.23721 -35.52377 -34.53060 -33.53426 -31.37832 -29.26104 -27.68256 -26.78697 -22.93316 -22.75118 -21.30290 -20.99834 -19.08659 -18.63856 -17.92475 -17.41433 -17.19711 -16.28227 -16.09595 -15.52801 -15.42548 -15.14621 -14.39668 -14.19458 -13.88864 -13.60640 -13.38840 -13.24890 -12.94844 -12.79095 -12.77048 -12.69143 -12.51890 -12.12571 -11.89785 -11.72702 -11.42049 -11.35152 -11.24719 -11.03607 -10.27534 -9.25174 -9.22715 -8.61384 -6.32900 0.60079 0.97186 1.11156 1.20378 1.34729 1.36800 1.46992 1.54535 2.03571 2.19744 2.77248 3.45481 3.75592 3.99777 4.04921 4.21591 4.35815 4.46981 4.57045 4.64136 4.69745 4.77978 4.99538 5.06886 5.13326 5.17357 5.34448 5.40315 5.51845 5.74717 6.01296 6.13069 6.20069 6.38820 6.70107 6.89668 6.95976 7.07533 8.34781 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.005286 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.227030 B = 5295.638621 C = 6684.548146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.100 4.100 3 Cl -0.085 7.085 4 C 0.097 3.903 5 O -0.356 6.356 6 C 0.469 3.531 7 O -0.529 6.529 8 C -0.041 4.041 9 C -0.203 4.203 10 C -0.085 4.085 11 C -0.242 4.242 12 C -0.113 4.113 13 C -0.191 4.191 14 C 0.099 3.901 15 C -0.486 4.486 16 H 0.071 0.929 17 C 0.038 3.962 18 N -0.822 5.822 19 Si 0.970 3.030 20 H -0.254 1.254 21 H -0.267 1.267 22 H -0.267 1.267 23 H 0.143 0.857 24 H 0.141 0.859 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 11.892 5.570 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.126 4.126 3 Cl -0.057 7.057 4 C 0.024 3.976 5 O -0.273 6.273 6 C 0.313 3.687 7 O -0.417 6.417 8 C -0.078 4.078 9 C -0.204 4.204 10 C -0.103 4.103 11 C -0.261 4.261 12 C -0.131 4.131 13 C -0.211 4.211 14 C 0.097 3.903 15 C -0.515 4.515 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.448 5.448 19 Si 0.791 3.209 20 H -0.178 1.178 21 H -0.191 1.191 22 H -0.192 1.192 23 H 0.161 0.839 24 H 0.159 0.841 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.994 11.593 5.670 14.229 hybrid contribution -0.501 -0.511 0.000 0.715 sum -6.495 11.081 5.671 14.041 Atomic orbital electron populations 1.24524 0.92570 1.06025 0.92720 1.22866 0.94097 0.86214 1.09449 1.98371 1.78519 1.31712 1.97100 1.22114 0.95377 0.94720 0.85424 1.86584 1.57690 1.41998 1.41059 1.24376 0.76808 0.78073 0.89427 1.90635 1.62312 1.44247 1.44521 1.20002 0.98324 0.96966 0.92550 1.19466 0.94901 0.93089 1.12955 1.20765 0.94090 0.97478 0.97976 1.20731 1.00410 0.92853 1.12125 1.20988 0.95087 0.97781 0.99252 1.21315 0.95576 0.98021 1.06177 1.17724 0.93118 0.90966 0.88511 1.19619 0.96485 1.09839 1.25574 0.91043 1.26662 1.04229 0.93651 0.93159 1.69863 1.38433 1.16425 1.20114 0.85429 0.77205 0.79397 0.78854 1.17797 1.19096 1.19209 0.83935 0.84144 0.88819 0.90179 0.87448 0.85885 0.86300 0.86495 0.87477 0.88304 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 14.05 67.62 0.95 -0.88 16 2 C -0.10 -2.13 6.14 25.49 0.16 -1.97 16 3 Cl -0.09 -1.88 28.99 -2.72 -0.08 -1.96 16 4 C 0.10 2.62 5.78 71.23 0.41 3.03 16 5 O -0.36 -11.73 10.20 -51.35 -0.52 -12.25 16 6 C 0.47 18.42 7.57 71.23 0.54 18.96 16 7 O -0.53 -24.40 15.78 21.95 0.35 -24.06 16 8 C -0.04 -1.61 5.29 29.10 0.15 -1.46 16 9 C -0.20 -9.58 4.43 -19.40 -0.09 -9.66 16 10 C -0.09 -3.73 9.66 22.22 0.21 -3.52 16 11 C -0.24 -10.72 10.05 22.46 0.23 -10.49 16 12 C -0.11 -5.41 10.02 22.22 0.22 -5.19 16 13 C -0.19 -10.35 8.68 22.73 0.20 -10.15 16 14 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 15 C -0.49 -25.70 8.14 23.46 0.19 -25.51 16 16 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 17 C 0.04 1.91 5.16 85.25 0.44 2.35 16 18 N -0.82 -42.80 10.95 21.82 0.24 -42.56 16 19 Si 0.97 38.07 29.59 68.60 2.03 40.10 16 20 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 23 H 0.14 1.73 7.84 -2.91 -0.02 1.70 16 24 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 25 H 0.09 2.42 7.79 -2.39 -0.02 2.40 16 26 H 0.08 2.16 8.13 -2.38 -0.02 2.14 16 27 H 0.11 4.20 7.08 -2.39 -0.02 4.18 16 28 H 0.12 3.87 8.05 -2.39 -0.02 3.86 16 29 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 30 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 31 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 32 H 0.10 5.58 6.20 -2.91 -0.02 5.57 16 33 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 Total: -1.00 -63.33 309.67 6.63 -56.70 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 1.12 Total: 23.32 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 3.50 Total: -39.29 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.24 Total: -42.56 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.18 Total: -36.31 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -63.33 6.63 -56.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777167668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.774 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds