Wall clock time and date at job start Tue Mar 31 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46632 * 270.00163 * 3 2 1 5 5 H 1.48496 * 109.46690 * 29.99716 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21559 * 120.00081 * 359.97438 * 11 10 9 13 13 C 1.47756 * 119.99706 * 180.02562 * 11 10 9 14 14 C 1.40015 * 120.57214 * 359.72354 * 13 11 10 15 15 C 1.38351 * 118.30528 * 179.71532 * 14 13 11 16 16 C 1.50704 * 120.33094 * 180.28065 * 15 14 13 17 17 C 1.53001 * 117.49963 * 188.94825 * 16 15 14 18 18 C 1.52995 * 117.49902 * 120.32545 * 16 15 14 19 19 C 1.38351 * 119.34172 * 0.60230 * 15 14 13 20 20 N 1.31920 * 121.10262 * 359.65467 * 19 15 14 21 21 C 1.31823 * 121.86236 * 0.02594 * 20 19 15 22 22 Cl 1.73601 * 119.73940 * 179.97438 * 21 20 19 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 25 25 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 26 26 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 27 27 H 1.07998 * 120.84764 * 359.97438 * 14 13 11 28 28 H 1.09002 * 115.54517 * 334.65209 * 16 15 14 29 29 H 1.08997 * 117.49717 * 359.97438 * 17 16 15 30 30 H 1.08995 * 117.50012 * 145.01923 * 17 16 15 31 31 H 1.09003 * 117.49541 * 214.98176 * 18 16 15 32 32 H 1.09000 * 117.50323 * 359.97286 * 18 16 15 33 33 H 1.07996 * 119.45110 * 179.67914 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5586 -5.1055 0.0020 13 6 2.7139 -6.0064 0.0016 14 6 4.0930 -5.7643 -0.0042 15 6 4.9498 -6.8506 0.0027 16 6 6.4424 -6.6426 0.0032 17 6 7.3274 -7.8740 -0.2002 18 6 7.2353 -7.2173 1.1787 19 6 4.4227 -8.1297 0.0023 20 7 3.1187 -8.3295 0.0023 21 6 2.2614 -7.3282 0.0021 22 17 0.5563 -7.6545 0.0015 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 4.4781 -4.7553 -0.0096 28 1 6.7857 -5.6997 -0.4226 29 1 6.8300 -8.8346 -0.3340 30 1 8.2532 -7.7415 -0.7599 31 1 8.1006 -6.6528 1.5260 32 1 6.6775 -7.7455 1.9519 33 1 5.0899 -8.9790 0.0024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793974547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:35 Heat of formation + Delta-G solvation = 19.541782 kcal Electronic energy + Delta-G solvation = -18633.634240 eV Core-core repulsion = 15493.168880 eV Total energy + Delta-G solvation = -3140.465360 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77829 -38.66133 -37.39102 -36.25538 -34.32469 -33.05645 -32.10793 -30.86623 -27.42811 -25.11057 -24.01753 -22.97719 -22.64787 -21.28263 -19.76567 -18.05020 -17.08290 -17.04372 -15.99561 -15.62064 -15.04751 -14.99428 -14.77655 -14.36811 -13.87048 -13.63108 -13.03040 -12.89380 -12.35410 -12.02335 -11.99066 -11.85231 -11.76560 -11.18600 -10.96924 -10.94119 -10.91016 -10.74049 -10.32496 -10.01524 -9.87900 -9.44658 -8.94632 -8.82299 -8.76187 -7.95772 -6.20603 -4.28117 0.50624 0.88465 1.96652 3.00877 3.21505 3.27619 3.29777 3.55052 3.76565 3.91598 4.12603 4.29460 4.35490 4.46283 4.60123 4.60881 4.73906 4.92450 5.04295 5.15790 5.26844 5.42655 5.51369 5.63860 5.70049 5.74720 5.95126 6.19782 7.22933 7.30218 7.46261 7.50057 7.59569 7.91278 8.49139 8.69835 8.95055 9.38292 10.89511 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.004742 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.540114 B = 5903.037183 C = 7573.629510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.702 5.702 11 C 0.538 3.462 12 O -0.523 6.523 13 C -0.153 4.153 14 C -0.030 4.030 15 C -0.111 4.111 16 C -0.115 4.115 17 C -0.175 4.175 18 C -0.167 4.167 19 C 0.127 3.873 20 N -0.479 5.479 21 C 0.210 3.790 22 Cl 0.010 6.990 23 H 0.267 0.733 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.388 0.612 27 H 0.150 0.850 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.526 -14.700 0.333 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.351 5.351 11 C 0.321 3.679 12 O -0.401 6.401 13 C -0.159 4.159 14 C -0.056 4.056 15 C -0.113 4.113 16 C -0.133 4.133 17 C -0.212 4.212 18 C -0.204 4.204 19 C -0.031 4.031 20 N -0.190 5.190 21 C 0.045 3.955 22 Cl 0.039 6.961 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.222 0.778 27 H 0.168 0.832 28 H 0.139 0.861 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.963 -15.564 0.339 20.258 hybrid contribution 1.102 1.835 -0.027 2.141 sum 14.065 -13.729 0.312 19.657 Atomic orbital electron populations 1.69971 1.06104 1.27395 1.48616 1.24938 0.94908 0.99432 0.94609 0.86413 0.79613 0.82638 0.78244 1.20432 1.20960 1.19748 1.21186 0.93222 0.90370 1.53596 0.91918 1.19186 0.88175 0.81538 0.98108 1.46415 1.11207 1.05742 1.71716 1.17836 0.87837 0.82961 0.79261 1.90839 1.15308 1.84294 1.49690 1.20995 0.94823 0.94658 1.05440 1.21658 0.90964 1.00109 0.92866 1.20087 0.95052 0.93941 1.02192 1.20920 0.88178 0.99444 1.04794 1.23089 1.01524 0.96562 0.99989 1.23076 1.02164 1.03506 0.91613 1.22695 0.90041 0.96308 0.94045 1.67188 1.03291 1.34738 1.13751 1.21870 0.89271 0.88419 0.95893 1.98456 1.06285 1.95834 1.95519 0.92367 0.95134 0.95117 0.77832 0.83235 0.86114 0.88271 0.87999 0.88021 0.88408 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.29 55.43 0.74 -24.89 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.45 16 10 N -0.70 -14.51 5.50 -62.45 -0.34 -14.85 16 11 C 0.54 10.95 7.77 -12.37 -0.10 10.85 16 12 O -0.52 -12.37 14.00 5.31 0.07 -12.29 16 13 C -0.15 -2.51 5.89 -104.79 -0.62 -3.13 16 14 C -0.03 -0.38 9.35 -38.87 -0.36 -0.74 16 15 C -0.11 -1.18 5.62 -104.54 -0.59 -1.77 16 16 C -0.11 -0.89 6.06 -91.77 -0.56 -1.45 16 17 C -0.17 -1.05 9.87 -26.73 -0.26 -1.32 16 18 C -0.17 -1.09 10.17 -26.73 -0.27 -1.36 16 19 C 0.13 1.42 10.46 -17.47 -0.18 1.24 16 20 N -0.48 -6.96 10.33 -10.01 -0.10 -7.07 16 21 C 0.21 3.48 7.31 -17.00 -0.12 3.35 16 22 Cl 0.01 0.17 26.20 -51.86 -1.36 -1.18 16 23 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.39 6.73 6.43 -40.82 -0.26 6.47 16 27 H 0.15 1.60 6.52 -52.49 -0.34 1.26 16 28 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.53 6.19 -51.93 -0.32 0.21 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.16 1.30 6.02 -52.49 -0.32 0.99 16 LS Contribution 302.75 15.07 4.56 4.56 Total: -1.00 -31.58 302.75 -8.27 -39.85 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.31 Total: 1.40 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.51 Total: -0.93 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.29 Total: -46.80 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.36 Total: -1.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.58 -8.27 -39.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793974547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.391 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds