Wall clock time and date at job start Tue Mar 31 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46794 * 2 1 4 4 C 1.34543 * 116.99536 * 180.02562 * 3 2 1 5 5 O 1.21429 * 120.00425 * 0.02562 * 4 3 2 6 6 O 1.34608 * 119.99367 * 180.02562 * 4 3 2 7 7 C 1.35774 * 116.99770 * 175.09374 * 6 4 3 8 8 C 1.38986 * 119.90221 * 256.81305 * 7 6 4 9 9 C 1.37704 * 120.09736 * 179.72032 * 8 7 6 10 10 C 1.39805 * 119.89927 * 0.55569 * 9 8 7 11 11 C 1.47453 * 120.09810 * 179.70171 * 10 9 8 12 12 O 1.21537 * 120.00089 * 180.02562 * 11 10 9 13 13 O 1.34762 * 119.99817 * 0.02562 * 11 10 9 14 14 C 1.34861 * 116.99742 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00439 * 359.97438 * 14 13 11 16 16 C 1.38807 * 119.99739 * 180.02562 * 14 13 11 17 17 N 1.31420 * 120.00142 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47470 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47554 * 119.99873 * 18 16 14 21 21 H 1.48506 * 109.47241 * 239.99976 * 18 16 14 22 22 C 1.39807 * 119.80806 * 359.71973 * 10 9 8 23 23 C 1.37703 * 119.90039 * 0.02562 * 22 10 9 24 24 H 1.08999 * 109.47482 * 59.99695 * 1 2 3 25 25 H 1.09004 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47359 * 299.99493 * 1 2 3 27 27 H 1.09003 * 109.47359 * 240.00507 * 2 1 3 28 28 H 1.08999 * 109.47482 * 120.00305 * 2 1 3 29 29 H 1.07996 * 119.95126 * 0.02562 * 8 7 6 30 30 H 1.07997 * 120.05208 * 180.24971 * 9 8 7 31 31 H 0.96996 * 120.00175 * 180.02562 * 17 16 14 32 32 H 1.07996 * 120.05027 * 179.97438 * 22 10 9 33 33 H 1.07997 * 119.95181 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3477 1.5453 -0.0005 5 8 4.0875 0.5823 -0.0015 6 8 3.8621 2.7892 0.0000 7 6 5.2116 2.8981 0.1028 8 6 5.7868 3.2652 1.3137 9 6 7.1553 3.3712 1.4241 10 6 7.9656 3.1204 0.3128 11 6 9.4311 3.2391 0.4244 12 8 10.1339 3.0211 -0.5430 13 8 9.9913 3.5893 1.5989 14 6 11.3364 3.6803 1.6327 15 1 11.9140 3.4757 0.7435 16 6 11.9785 4.0359 2.8109 17 7 11.2757 4.2844 3.8932 18 14 13.8415 4.1627 2.8575 19 1 14.3937 3.8364 1.5182 20 1 14.2345 5.5449 3.2320 21 1 14.3778 3.2069 3.8597 22 6 7.3824 2.7570 -0.9048 23 6 6.0133 2.6482 -1.0047 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.1598 3.4627 2.1705 30 1 7.6017 3.6526 2.3664 31 1 11.7243 4.5332 4.7163 32 1 8.0046 2.5628 -1.7658 33 1 5.5619 2.3680 -1.9449 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800287230.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:48 Heat of formation + Delta-G solvation = -171.190930 kcal Electronic energy + Delta-G solvation = -20603.030931 eV Core-core repulsion = 16981.292863 eV Total energy + Delta-G solvation = -3621.738067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53851 -39.71125 -38.98425 -37.46246 -36.31063 -35.16888 -32.31275 -32.15771 -30.96561 -30.34410 -25.91026 -24.88457 -23.32713 -22.69321 -22.02020 -20.32333 -19.38558 -18.23471 -17.87121 -17.49364 -17.19910 -16.14405 -15.74282 -15.18267 -14.60468 -14.53099 -14.31586 -14.20009 -13.95554 -13.37484 -13.28191 -13.00883 -12.64634 -12.37605 -12.16951 -11.96309 -11.85440 -11.63459 -11.31758 -11.24132 -10.98203 -10.67805 -10.53781 -10.46114 -9.92725 -9.18505 -8.92017 -8.71884 -8.63352 -6.55265 -4.16233 0.56653 1.49297 1.61583 2.17398 3.04998 3.14147 3.21825 3.32177 3.83728 3.93819 4.21325 4.43715 4.51489 4.51901 4.84613 4.91123 4.96073 5.06429 5.07899 5.34738 5.40440 5.50506 5.52186 5.64004 5.88916 6.02704 6.13673 6.32969 6.51603 6.55119 6.85818 6.95835 7.29203 7.79864 7.82751 8.60666 8.93380 9.72101 10.62073 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.044012 B = 0.003052 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.038220 B = 9172.453611 C = 9462.234724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.075 3.925 3 O -0.329 6.329 4 C 0.594 3.406 5 O -0.527 6.527 6 O -0.260 6.260 7 C 0.087 3.913 8 C -0.117 4.117 9 C -0.062 4.062 10 C -0.070 4.070 11 C 0.427 3.573 12 O -0.551 6.551 13 O -0.202 6.202 14 C -0.371 4.371 15 H 0.100 0.900 16 C 0.041 3.959 17 N -0.855 5.855 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.060 4.060 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.272 0.728 32 H 0.144 0.856 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 -5.018 -4.898 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.002 3.998 3 O -0.247 6.247 4 C 0.404 3.596 5 O -0.425 6.425 6 O -0.176 6.176 7 C 0.046 3.954 8 C -0.136 4.136 9 C -0.080 4.080 10 C -0.072 4.072 11 C 0.275 3.725 12 O -0.450 6.450 13 O -0.108 6.108 14 C -0.447 4.447 15 H 0.118 0.882 16 C -0.164 4.164 17 N -0.491 5.491 18 Si 0.771 3.229 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.079 4.079 23 C -0.138 4.138 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.530 -5.125 -4.900 19.841 hybrid contribution 0.857 -0.085 0.063 0.863 sum -17.674 -5.209 -4.837 19.050 Atomic orbital electron populations 1.21853 0.91735 1.03436 1.03979 1.23274 0.95336 0.77591 1.03581 1.86278 1.18540 1.34073 1.85854 1.20731 0.82378 0.82499 0.74029 1.91141 1.60042 1.40269 1.51009 1.84312 1.22550 1.25919 1.84790 1.18551 0.78034 1.04148 0.94712 1.21101 0.95268 1.01451 0.95733 1.21523 0.91720 0.95296 0.99505 1.19615 0.91894 1.01219 0.94442 1.20585 0.87866 0.80846 0.83202 1.90644 1.63515 1.51874 1.38980 1.83887 1.24664 1.70674 1.31584 1.21420 0.77824 1.46809 0.98626 0.88217 1.25426 1.01036 0.95919 0.94065 1.69977 1.36444 1.41791 1.00854 0.85552 0.80033 0.78303 0.79055 1.18764 1.20003 1.20016 1.21093 0.93403 0.95906 0.97472 1.21119 0.93485 1.00994 0.98174 0.91142 0.89470 0.91105 0.90473 0.90418 0.84508 0.82823 0.91787 0.83794 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.08 0.60 6.19 37.16 0.23 0.83 16 3 O -0.33 -3.78 10.27 -47.98 -0.49 -4.27 16 4 C 0.59 8.39 8.82 101.05 0.89 9.28 16 5 O -0.53 -8.64 15.66 -27.40 -0.43 -9.07 16 6 O -0.26 -3.78 10.06 -31.97 -0.32 -4.10 16 7 C 0.09 1.35 5.15 -39.02 -0.20 1.15 16 8 C -0.12 -1.82 9.97 -39.50 -0.39 -2.21 16 9 C -0.06 -1.12 9.61 -39.19 -0.38 -1.50 16 10 C -0.07 -1.43 5.87 -104.97 -0.62 -2.05 16 11 C 0.43 10.82 7.83 34.48 0.27 11.09 16 12 O -0.55 -15.03 15.59 -19.30 -0.30 -15.33 16 13 O -0.20 -5.69 8.98 -21.74 -0.20 -5.88 16 14 C -0.37 -10.77 9.65 30.94 0.30 -10.48 16 15 H 0.10 2.92 6.86 -52.49 -0.36 2.56 16 16 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 17 N -0.85 -24.21 13.67 55.49 0.76 -23.45 16 18 Si 0.95 20.76 29.55 -169.99 -5.02 15.73 16 19 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C -0.06 -1.06 9.59 -39.19 -0.38 -1.43 16 23 C -0.12 -1.84 9.55 -39.50 -0.38 -2.22 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.15 2.86 7.60 -52.49 -0.40 2.46 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.14 2.43 7.64 -52.49 -0.40 2.03 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -33.42 310.34 -4.95 -38.36 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.25 Total: 0.24 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.36 Total: 3.10 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.76 Total: -23.45 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.74 Total: -38.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.42 -4.95 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800287230.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.827 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds