Wall clock time and date at job start Tue Mar 31 2020 01:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46794 * 2 1 4 4 C 1.34543 * 116.99536 * 180.02562 * 3 2 1 5 5 O 1.21429 * 120.00425 * 0.02562 * 4 3 2 6 6 O 1.34608 * 119.99367 * 180.02562 * 4 3 2 7 7 C 1.35774 * 116.99770 * 175.09374 * 6 4 3 8 8 C 1.38986 * 119.90221 * 256.81305 * 7 6 4 9 9 C 1.37704 * 120.09736 * 179.72032 * 8 7 6 10 10 C 1.39805 * 119.89927 * 0.55569 * 9 8 7 11 11 C 1.47453 * 120.09810 * 179.70171 * 10 9 8 12 12 O 1.21537 * 120.00089 * 180.02562 * 11 10 9 13 13 O 1.34762 * 119.99817 * 0.02562 * 11 10 9 14 14 C 1.34861 * 116.99742 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00439 * 359.97438 * 14 13 11 16 16 C 1.38807 * 119.99739 * 180.02562 * 14 13 11 17 17 N 1.31420 * 120.00142 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47470 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47554 * 119.99873 * 18 16 14 21 21 H 1.48506 * 109.47241 * 239.99976 * 18 16 14 22 22 C 1.39807 * 119.80806 * 359.71973 * 10 9 8 23 23 C 1.37703 * 119.90039 * 0.02562 * 22 10 9 24 24 H 1.08999 * 109.47482 * 59.99695 * 1 2 3 25 25 H 1.09004 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47359 * 299.99493 * 1 2 3 27 27 H 1.09003 * 109.47359 * 240.00507 * 2 1 3 28 28 H 1.08999 * 109.47482 * 120.00305 * 2 1 3 29 29 H 1.07996 * 119.95126 * 0.02562 * 8 7 6 30 30 H 1.07997 * 120.05208 * 180.24971 * 9 8 7 31 31 H 0.96996 * 120.00175 * 180.02562 * 17 16 14 32 32 H 1.07996 * 120.05027 * 179.97438 * 22 10 9 33 33 H 1.07997 * 119.95181 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3477 1.5453 -0.0005 5 8 4.0875 0.5823 -0.0015 6 8 3.8621 2.7892 0.0000 7 6 5.2116 2.8981 0.1028 8 6 5.7868 3.2652 1.3137 9 6 7.1553 3.3712 1.4241 10 6 7.9656 3.1204 0.3128 11 6 9.4311 3.2391 0.4244 12 8 10.1339 3.0211 -0.5430 13 8 9.9913 3.5893 1.5989 14 6 11.3364 3.6803 1.6327 15 1 11.9140 3.4757 0.7435 16 6 11.9785 4.0359 2.8109 17 7 11.2757 4.2844 3.8932 18 14 13.8415 4.1627 2.8575 19 1 14.3937 3.8364 1.5182 20 1 14.2345 5.5449 3.2320 21 1 14.3778 3.2069 3.8597 22 6 7.3824 2.7570 -0.9048 23 6 6.0133 2.6482 -1.0047 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.1598 3.4627 2.1705 30 1 7.6017 3.6526 2.3664 31 1 11.7243 4.5332 4.7163 32 1 8.0046 2.5628 -1.7658 33 1 5.5619 2.3680 -1.9449 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800287230.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:47 Heat of formation + Delta-G solvation = -190.563185 kcal Electronic energy + Delta-G solvation = -20603.870975 eV Core-core repulsion = 16981.292863 eV Total energy + Delta-G solvation = -3622.578111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.71481 -41.31214 -40.43849 -38.84922 -37.47999 -37.20681 -34.38562 -32.79778 -32.34096 -31.75980 -27.81299 -26.22209 -24.39880 -24.04660 -23.14685 -21.95421 -20.49431 -19.94905 -19.43755 -19.09425 -18.43869 -17.42413 -17.06535 -16.72145 -16.64166 -16.17004 -15.71958 -15.36514 -15.04517 -14.75108 -14.67403 -13.97193 -13.75578 -13.63602 -13.53748 -13.44967 -13.12087 -12.96793 -12.60120 -12.45745 -12.41193 -12.22389 -12.09060 -11.91637 -11.67446 -11.24132 -10.74663 -10.25792 -10.10923 -8.60738 -6.36956 -0.78958 0.14644 0.44451 1.04974 1.34283 1.34376 1.52869 1.67225 2.06171 2.55180 2.60823 2.91492 2.98579 3.63552 3.69345 3.96940 3.97072 4.00232 4.09831 4.16673 4.34242 4.41747 4.67585 4.81080 4.90246 4.91279 4.98159 4.99308 5.13981 5.18668 5.30182 5.37898 5.63264 5.75978 6.53399 6.68358 6.83816 7.64716 8.59650 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.044012 B = 0.003052 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.038220 B = 9172.453611 C = 9462.234724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 O -0.326 6.326 4 C 0.600 3.400 5 O -0.552 6.552 6 O -0.257 6.257 7 C 0.099 3.901 8 C -0.108 4.108 9 C -0.060 4.060 10 C -0.104 4.104 11 C 0.430 3.570 12 O -0.577 6.577 13 O -0.227 6.227 14 C -0.419 4.419 15 H 0.085 0.915 16 C -0.001 4.001 17 N -0.893 5.893 18 Si 1.020 2.980 19 H -0.265 1.265 20 H -0.258 1.258 21 H -0.259 1.259 22 C -0.054 4.054 23 C -0.111 4.111 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.169 0.831 30 H 0.142 0.858 31 H 0.282 0.718 32 H 0.148 0.852 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 -5.460 -5.123 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.008 4.008 3 O -0.244 6.244 4 C 0.410 3.590 5 O -0.451 6.451 6 O -0.173 6.173 7 C 0.058 3.942 8 C -0.126 4.126 9 C -0.078 4.078 10 C -0.105 4.105 11 C 0.279 3.721 12 O -0.477 6.477 13 O -0.134 6.134 14 C -0.494 4.494 15 H 0.102 0.898 16 C -0.203 4.203 17 N -0.529 5.529 18 Si 0.839 3.161 19 H -0.189 1.189 20 H -0.182 1.182 21 H -0.183 1.183 22 C -0.072 4.072 23 C -0.129 4.129 24 H 0.092 0.908 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.186 0.814 30 H 0.160 0.840 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -20.507 -5.569 -5.128 21.859 hybrid contribution 1.110 -0.033 0.026 1.111 sum -19.397 -5.602 -5.102 20.824 Atomic orbital electron populations 1.21904 0.89213 1.05051 1.04183 1.23703 0.97173 0.75986 1.03931 1.86339 1.16610 1.36284 1.85117 1.20718 0.83133 0.81691 0.73426 1.91141 1.60831 1.40798 1.52291 1.84279 1.21597 1.26522 1.84874 1.18679 0.78726 1.02222 0.94571 1.21298 0.94185 1.00180 0.96966 1.21411 0.92765 0.95265 0.98376 1.19480 0.89033 1.05246 0.96760 1.21545 0.89940 0.78489 0.82085 1.90594 1.64929 1.52611 1.39580 1.83909 1.24559 1.72080 1.32892 1.21573 0.78405 1.50198 0.99211 0.89773 1.26593 1.06353 0.94353 0.92970 1.70046 1.38826 1.42439 1.01619 0.84533 0.73046 0.79341 0.79220 1.18856 1.18205 1.18311 1.21145 0.94470 0.95196 0.96387 1.21365 0.92338 0.99728 0.99498 0.90839 0.87070 0.90982 0.90022 0.90292 0.81383 0.83972 0.90847 0.83470 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 71.98 0.74 -0.30 16 2 C 0.06 0.87 6.19 71.98 0.45 1.32 16 3 O -0.33 -6.63 10.27 -46.95 -0.48 -7.11 16 4 C 0.60 15.37 8.82 113.37 1.00 16.37 16 5 O -0.55 -16.84 15.66 27.90 0.44 -16.41 16 6 O -0.26 -6.70 10.06 10.37 0.10 -6.60 16 7 C 0.10 2.85 5.15 22.63 0.12 2.97 16 8 C -0.11 -3.16 9.97 22.32 0.22 -2.93 16 9 C -0.06 -2.17 9.61 22.52 0.22 -1.95 16 10 C -0.10 -4.32 5.87 -20.09 -0.12 -4.44 16 11 C 0.43 22.82 7.83 70.25 0.55 23.37 16 12 O -0.58 -32.90 15.59 19.72 0.31 -32.59 16 13 O -0.23 -13.50 8.98 10.97 0.10 -13.40 16 14 C -0.42 -25.48 9.65 67.96 0.66 -24.82 16 15 H 0.08 5.21 6.86 -2.91 -0.02 5.19 16 16 C 0.00 -0.07 5.49 84.89 0.47 0.40 16 17 N -0.89 -51.76 13.67 21.63 0.30 -51.46 16 18 Si 1.02 42.95 29.55 68.60 2.03 44.98 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 C -0.05 -1.85 9.59 22.52 0.22 -1.63 16 23 C -0.11 -3.18 9.55 22.32 0.21 -2.97 16 24 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.17 3.82 8.06 -2.91 -0.02 3.79 16 30 H 0.14 5.48 7.60 -2.91 -0.02 5.46 16 31 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.15 4.93 7.64 -2.91 -0.02 4.91 16 33 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -74.76 310.34 8.66 -66.10 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.14 Total: 11.11 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.73 Total: 5.37 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.30 Total: -51.46 kcal Atomic # 8 Polarization: -76.57 SS G_CDS: 0.47 Total: -76.11 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -74.76 8.66 -66.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800287230.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.460 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds