Wall clock time and date at job start Tue Mar 31 2020 00:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50699 * 115.55297 * 2 1 4 4 O 1.20825 * 120.00305 * 214.41542 * 3 2 1 5 5 O 1.34236 * 120.00142 * 34.41821 * 3 2 1 6 6 C 1.45189 * 117.00203 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47147 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47509 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47461 * 179.97438 * 8 7 6 10 10 C 1.76203 * 99.99786 * 179.97438 * 9 8 7 11 11 H 1.07991 * 120.00453 * 359.72125 * 10 9 8 12 12 C 1.38805 * 119.99580 * 180.02562 * 10 9 8 13 13 N 1.31625 * 119.99709 * 179.72302 * 12 10 9 14 14 Si 1.86803 * 119.99953 * 359.71856 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00492 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00509 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00339 * 14 12 10 18 18 C 1.53002 * 117.49909 * 214.32900 * 2 1 3 19 19 C 1.53007 * 117.50099 * 145.66858 * 2 1 3 20 20 F 1.39893 * 117.50115 * 215.00543 * 19 2 1 21 21 F 1.39900 * 117.49455 * 0.02562 * 19 2 1 22 22 H 1.09004 * 109.47040 * 85.58103 * 1 2 3 23 23 H 1.08998 * 109.47270 * 205.58214 * 1 2 3 24 24 H 1.09007 * 109.47148 * 325.58240 * 1 2 3 25 25 H 1.08995 * 109.47479 * 60.00055 * 6 5 3 26 26 H 1.09002 * 109.47388 * 299.99544 * 6 5 3 27 27 H 1.08996 * 109.47321 * 59.99887 * 7 6 5 28 28 H 1.09004 * 109.47163 * 299.99902 * 7 6 5 29 29 H 1.09002 * 109.47428 * 59.99234 * 8 7 6 30 30 H 1.09004 * 109.46652 * 300.00000 * 8 7 6 31 31 H 0.97000 * 119.99481 * 179.97438 * 13 12 10 32 32 H 1.09001 * 117.49883 * 359.97438 * 18 2 1 33 33 H 1.09005 * 117.49595 * 144.97944 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 3.2193 1.5323 -0.5914 5 8 1.6043 2.3788 0.6571 6 6 2.2859 3.6600 0.6137 7 6 1.4856 4.6908 1.4123 8 6 2.2036 6.0411 1.3661 9 16 1.2564 7.2607 2.3103 10 6 2.2815 8.6776 2.0948 11 1 3.1908 8.6035 1.5170 12 6 1.9234 9.8876 2.6731 13 7 2.6920 10.9447 2.5167 14 14 0.3509 10.0157 3.6732 15 1 0.6425 9.7061 5.0960 16 1 -0.1919 11.3939 3.5677 17 1 -0.6481 9.0491 3.1509 18 6 2.2364 -1.1208 -0.7654 19 6 2.2364 -1.1207 0.7654 20 9 3.4362 -0.8049 1.4117 21 9 1.4339 -2.0674 1.4112 22 1 -0.3633 0.0792 -1.0247 23 1 -0.3634 -0.9269 0.4437 24 1 -0.3634 0.8478 0.5809 25 1 2.3726 3.9906 -0.4213 26 1 3.2809 3.5571 1.0468 27 1 1.3985 4.3605 2.4474 28 1 0.4908 4.7937 0.9788 29 1 2.2904 6.3712 0.3309 30 1 3.1985 5.9385 1.7994 31 1 2.4415 11.7903 2.9205 32 1 1.6111 -1.8583 -1.2685 33 1 3.1711 -0.8745 -1.2691 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817252483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:33 Heat of formation + Delta-G solvation = -186.937584 kcal Electronic energy + Delta-G solvation = -19016.559809 eV Core-core repulsion = 15418.495351 eV Total energy + Delta-G solvation = -3598.064457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.93016 -48.60941 -41.85274 -38.57977 -37.29900 -34.99212 -34.69653 -29.93165 -28.32886 -27.76601 -25.16696 -23.76421 -22.80827 -21.27927 -19.67228 -19.31262 -18.55160 -18.40371 -17.72273 -17.25203 -17.11633 -16.61501 -16.10937 -15.83966 -15.25048 -14.98841 -14.88428 -14.70540 -14.56557 -14.32541 -14.07498 -13.93451 -13.46720 -13.36987 -13.28305 -13.06096 -12.65997 -12.47926 -12.30465 -12.01790 -11.86018 -11.66766 -11.59768 -11.17655 -11.10531 -10.62327 -9.02149 -8.53237 -6.25612 0.58638 0.99537 1.27000 1.32659 1.47994 1.74155 1.83099 1.99303 2.23920 2.64079 2.85016 2.86625 3.18681 3.33640 3.44614 3.78742 3.88381 4.04462 4.13839 4.24671 4.41677 4.49129 4.61600 4.66220 4.74608 4.77109 4.95049 5.01671 5.20494 5.26960 5.68257 6.09216 6.41978 6.90364 8.59943 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.040998 B = 0.002850 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.792157 B = 9822.159889 C =10038.677903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.147 4.147 3 C 0.493 3.507 4 O -0.519 6.519 5 O -0.345 6.345 6 C 0.077 3.923 7 C -0.088 4.088 8 C -0.075 4.075 9 S -0.205 6.205 10 C -0.526 4.526 11 H 0.051 0.949 12 C 0.037 3.963 13 N -0.923 5.923 14 Si 0.926 3.074 15 H -0.261 1.261 16 H -0.263 1.263 17 H -0.226 1.226 18 C -0.108 4.108 19 C 0.208 3.792 20 F -0.171 7.171 21 F -0.147 7.147 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.277 0.723 32 H 0.179 0.821 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -27.528 -6.520 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.150 4.150 3 C 0.336 3.664 4 O -0.408 6.408 5 O -0.261 6.261 6 C 0.002 3.998 7 C -0.126 4.126 8 C -0.223 4.223 9 S 0.023 5.977 10 C -0.674 4.674 11 H 0.069 0.931 12 C -0.168 4.168 13 N -0.561 5.561 14 Si 0.747 3.253 15 H -0.186 1.186 16 H -0.187 1.187 17 H -0.149 1.149 18 C -0.145 4.145 19 C 0.171 3.829 20 F -0.152 7.152 21 F -0.128 7.128 22 H 0.119 0.881 23 H 0.112 0.888 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.197 0.803 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.153 -27.348 -6.031 28.904 hybrid contribution 1.571 1.100 0.047 1.919 sum -5.582 -26.247 -5.984 27.493 Atomic orbital electron populations 1.21501 0.85315 1.05216 1.05528 1.22701 1.00464 0.85820 1.06004 1.22511 0.82295 0.86396 0.75152 1.90688 1.23664 1.84354 1.42083 1.86411 1.52602 1.19859 1.67242 1.23128 0.95808 0.78883 1.01986 1.21150 0.99672 0.89880 1.01895 1.22975 1.01240 0.95864 1.02252 1.83804 1.36771 1.06444 1.70684 1.22354 1.10190 0.96028 1.38796 0.93077 1.25804 1.00635 0.94042 0.96276 1.70040 1.39592 1.01693 1.44732 0.85705 0.79993 0.79818 0.79786 1.18603 1.18738 1.14898 1.24791 1.04735 0.96322 0.88650 1.20221 0.79697 0.91999 0.90968 1.93050 1.45388 1.92736 1.84002 1.93051 1.71937 1.64015 1.83762 0.88106 0.88803 0.90456 0.90137 0.90982 0.89744 0.89167 0.90785 0.91187 0.91342 0.80311 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.78 71.98 0.70 -0.50 16 2 C -0.15 -2.28 2.64 -52.93 -0.14 -2.42 16 3 C 0.49 11.50 7.13 71.24 0.51 12.01 16 4 O -0.52 -14.68 16.01 21.97 0.35 -14.33 16 5 O -0.35 -8.41 9.49 -51.47 -0.49 -8.90 16 6 C 0.08 1.97 5.47 71.98 0.39 2.37 16 7 C -0.09 -2.46 5.60 30.59 0.17 -2.28 16 8 C -0.07 -2.75 5.67 71.98 0.41 -2.34 16 9 S -0.21 -9.62 19.41 -56.49 -1.10 -10.72 16 10 C -0.53 -30.78 10.04 67.96 0.68 -30.10 16 11 H 0.05 3.26 8.03 -2.92 -0.02 3.24 16 12 C 0.04 2.17 5.50 84.86 0.47 2.64 16 13 N -0.92 -56.73 13.97 21.65 0.30 -56.42 16 14 Si 0.93 43.50 27.73 68.60 1.90 45.41 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.23 -10.09 6.74 99.48 0.67 -9.42 16 18 C -0.11 -1.08 9.74 30.62 0.30 -0.78 16 19 C 0.21 3.46 5.14 30.62 0.16 3.62 16 20 F -0.17 -3.97 17.13 44.97 0.77 -3.20 16 21 F -0.15 -2.36 16.50 44.97 0.74 -1.61 16 22 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 23 H 0.09 0.71 7.10 -2.39 -0.02 0.69 16 24 H 0.08 0.97 7.50 -2.38 -0.02 0.95 16 25 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 26 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.18 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.14 1.51 7.67 -2.38 -0.02 1.49 16 Total: -1.00 -70.44 311.64 7.22 -63.22 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.08 Total: 4.34 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 3.65 Total: -17.79 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.42 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.14 Total: -23.23 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 1.51 Total: -4.81 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.90 Total: 45.41 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.10 Total: -10.72 kcal Total: -70.44 7.22 -63.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817252483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.715 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds