Wall clock time and date at job start Tue Mar 31 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 115.55004 * 2 1 4 4 O 1.20829 * 120.00013 * 145.66623 * 3 2 1 5 5 O 1.34222 * 120.00135 * 325.66896 * 3 2 1 6 6 C 1.45200 * 117.00094 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47378 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46997 * 180.02562 * 7 6 5 9 9 S 1.81000 * 109.46638 * 180.02562 * 8 7 6 10 10 C 1.76206 * 99.99929 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99720 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99847 * 180.02562 * 10 9 8 13 13 N 1.31638 * 119.99705 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00469 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46939 * 90.00148 * 14 12 10 16 16 H 1.48496 * 109.47561 * 210.00294 * 14 12 10 17 17 H 1.48498 * 109.46932 * 330.00626 * 14 12 10 18 18 C 1.53002 * 117.49569 * 145.66769 * 2 1 3 19 19 C 1.52993 * 117.51631 * 214.29372 * 2 1 3 20 20 F 1.39897 * 117.50273 * 0.02562 * 19 2 1 21 21 F 1.39908 * 117.49759 * 145.03340 * 19 2 1 22 22 H 1.09006 * 109.46861 * 34.41871 * 1 2 3 23 23 H 1.09001 * 109.46882 * 154.41713 * 1 2 3 24 24 H 1.08998 * 109.47571 * 274.41667 * 1 2 3 25 25 H 1.09000 * 109.47147 * 59.99859 * 6 5 3 26 26 H 1.08996 * 109.47221 * 300.00104 * 6 5 3 27 27 H 1.09000 * 109.46866 * 59.99970 * 7 6 5 28 28 H 1.09001 * 109.46611 * 300.00087 * 7 6 5 29 29 H 1.09000 * 109.47486 * 60.00167 * 8 7 6 30 30 H 1.09001 * 109.47362 * 299.99445 * 8 7 6 31 31 H 0.96996 * 119.99710 * 179.97438 * 13 12 10 32 32 H 1.08996 * 117.49972 * 215.00576 * 18 2 1 33 33 H 1.09003 * 117.49860 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2201 1.5320 0.5902 5 8 1.6034 2.3791 -0.6556 6 6 2.2857 3.6601 -0.6132 7 6 1.4849 4.6912 -1.4110 8 6 2.2042 6.0408 -1.3668 9 16 1.2564 7.2607 -2.3100 10 6 2.2824 8.6772 -2.0960 11 1 3.1899 8.6039 -1.5152 12 6 1.9236 9.8875 -2.6731 13 7 2.6898 10.9458 -2.5128 14 14 0.3535 10.0145 -3.6772 15 1 -0.7745 10.3886 -2.7868 16 1 0.5200 11.0512 -4.7273 17 1 0.0669 8.7048 -4.3156 18 6 2.2364 -1.1208 0.7655 19 6 2.2369 -1.1210 -0.7645 20 9 1.4348 -2.0676 -1.4108 21 9 3.4373 -0.8054 -1.4102 22 1 -0.3633 0.8478 -0.5809 23 1 -0.3633 -0.9269 -0.4438 24 1 -0.3634 0.0791 1.0246 25 1 3.2798 3.5568 -1.0483 26 1 2.3747 3.9903 0.4218 27 1 0.4907 4.7945 -0.9763 28 1 1.3964 4.3607 -2.4459 29 1 3.1983 5.9372 -1.8018 30 1 2.2931 6.3715 -0.3320 31 1 2.4392 11.7915 -2.9164 32 1 3.1712 -0.8747 1.2690 33 1 1.6111 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817252486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:36 Heat of formation + Delta-G solvation = -168.517872 kcal Electronic energy + Delta-G solvation = -19015.905157 eV Core-core repulsion = 15418.639439 eV Total energy + Delta-G solvation = -3597.265719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.21294 -47.87365 -40.88962 -37.72787 -36.42028 -33.69891 -32.47946 -29.35533 -27.01477 -25.69411 -24.23235 -23.13414 -21.53020 -20.42653 -18.60782 -17.79817 -17.52812 -17.32409 -16.73332 -16.51347 -15.68397 -15.03767 -14.74811 -14.56084 -14.49032 -14.14950 -13.94857 -13.64701 -13.48971 -12.96266 -12.90132 -12.87837 -12.66526 -12.50284 -11.60928 -11.37946 -11.30795 -11.13707 -11.02939 -10.98146 -10.50894 -10.44340 -10.28016 -9.85243 -9.04830 -8.64756 -7.01209 -6.32271 -4.06005 1.45626 2.08189 2.45667 2.70879 2.95236 3.27138 3.41988 3.46664 3.50613 3.88434 4.00496 4.22555 4.28037 4.71558 4.78373 4.91653 4.95716 5.04118 5.06644 5.12866 5.20440 5.23407 5.30831 5.60479 5.61457 5.70576 5.96149 6.21392 6.27561 6.49823 7.39908 7.91389 8.40557 9.13018 10.77171 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.002850 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.746365 B = 9822.442387 C =10038.940497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.141 4.141 3 C 0.498 3.502 4 O -0.492 6.492 5 O -0.344 6.344 6 C 0.072 3.928 7 C -0.101 4.101 8 C -0.085 4.085 9 S -0.205 6.205 10 C -0.505 4.505 11 H 0.089 0.911 12 C 0.092 3.908 13 N -0.880 5.880 14 Si 0.862 3.138 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.237 1.237 18 C -0.138 4.138 19 C 0.228 3.772 20 F -0.148 7.148 21 F -0.149 7.149 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.271 0.729 32 H 0.138 0.862 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 -25.545 6.073 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.339 3.661 4 O -0.379 6.379 5 O -0.260 6.260 6 C -0.003 4.003 7 C -0.139 4.139 8 C -0.233 4.233 9 S 0.023 5.977 10 C -0.653 4.653 11 H 0.107 0.893 12 C -0.116 4.116 13 N -0.517 5.517 14 Si 0.686 3.314 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.161 1.161 18 C -0.176 4.176 19 C 0.191 3.809 20 F -0.128 7.128 21 F -0.130 7.130 22 H 0.106 0.894 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.095 -25.351 5.578 26.453 hybrid contribution 0.823 0.564 0.041 0.999 sum -4.272 -24.787 5.619 25.773 Atomic orbital electron populations 1.21440 0.87231 1.04969 1.04282 1.22527 0.99175 0.87731 1.04878 1.21787 0.82600 0.85562 0.76140 1.90703 1.22408 1.83850 1.40948 1.86417 1.52563 1.19941 1.67070 1.23349 0.96313 0.78568 1.02037 1.21341 0.99622 0.91794 1.01191 1.22947 1.01695 0.95424 1.03254 1.84171 1.37128 1.07680 1.68761 1.22117 1.10643 0.93291 1.39214 0.89291 1.24794 0.97102 0.94503 0.95228 1.69938 1.37584 1.00728 1.43439 0.86670 0.83354 0.80396 0.80931 1.19306 1.20012 1.16138 1.24556 1.04703 0.97487 0.90809 1.19845 0.80171 0.91400 0.89465 1.93054 1.72083 1.64164 1.83504 1.93104 1.43981 1.92475 1.83397 0.89363 0.90178 0.90065 0.90698 0.90649 0.90135 0.90139 0.90907 0.90954 0.91892 0.84353 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.78 37.16 0.36 -0.43 16 2 C -0.14 -1.24 2.64 -155.66 -0.41 -1.65 16 3 C 0.50 6.11 7.13 36.00 0.26 6.36 16 4 O -0.49 -7.14 16.01 -18.75 -0.30 -7.44 16 5 O -0.34 -4.42 9.49 -39.24 -0.37 -4.79 16 6 C 0.07 0.96 5.47 37.16 0.20 1.17 16 7 C -0.10 -1.50 5.60 -26.73 -0.15 -1.65 16 8 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 9 S -0.21 -4.89 19.41 -107.50 -2.09 -6.98 16 10 C -0.51 -14.49 10.04 30.94 0.31 -14.18 16 11 H 0.09 2.72 8.03 -52.49 -0.42 2.29 16 12 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 13 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 14 Si 0.86 21.26 27.74 -169.99 -4.72 16.55 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 18 C -0.14 -0.89 9.73 -26.73 -0.26 -1.15 16 19 C 0.23 2.09 5.13 -26.74 -0.14 1.95 16 20 F -0.15 -1.32 16.50 2.25 0.04 -1.28 16 21 F -0.15 -1.76 17.13 2.25 0.04 -1.72 16 22 H 0.09 0.65 7.50 -51.93 -0.39 0.26 16 23 H 0.08 0.43 7.10 -51.93 -0.37 0.06 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 26 H 0.08 0.98 8.13 -51.93 -0.42 0.55 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 30 H 0.07 1.34 8.14 -51.91 -0.42 0.92 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.14 0.93 7.67 -51.93 -0.40 0.53 16 33 H 0.14 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -32.14 311.63 -5.75 -37.89 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.11 Total: -2.77 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 0.29 Total: -8.37 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.78 Total: -25.78 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.67 Total: -12.23 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.72 Total: 16.55 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.09 Total: -6.98 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.14 -5.75 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817252486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.629 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds