Wall clock time and date at job start Tue Mar 31 2020 00:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 115.55004 * 2 1 4 4 O 1.20829 * 120.00013 * 145.66623 * 3 2 1 5 5 O 1.34222 * 120.00135 * 325.66896 * 3 2 1 6 6 C 1.45200 * 117.00094 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47378 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46997 * 180.02562 * 7 6 5 9 9 S 1.81000 * 109.46638 * 180.02562 * 8 7 6 10 10 C 1.76206 * 99.99929 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99720 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99847 * 180.02562 * 10 9 8 13 13 N 1.31638 * 119.99705 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00469 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46939 * 90.00148 * 14 12 10 16 16 H 1.48496 * 109.47561 * 210.00294 * 14 12 10 17 17 H 1.48498 * 109.46932 * 330.00626 * 14 12 10 18 18 C 1.53002 * 117.49569 * 145.66769 * 2 1 3 19 19 C 1.52993 * 117.51631 * 214.29372 * 2 1 3 20 20 F 1.39897 * 117.50273 * 0.02562 * 19 2 1 21 21 F 1.39908 * 117.49759 * 145.03340 * 19 2 1 22 22 H 1.09006 * 109.46861 * 34.41871 * 1 2 3 23 23 H 1.09001 * 109.46882 * 154.41713 * 1 2 3 24 24 H 1.08998 * 109.47571 * 274.41667 * 1 2 3 25 25 H 1.09000 * 109.47147 * 59.99859 * 6 5 3 26 26 H 1.08996 * 109.47221 * 300.00104 * 6 5 3 27 27 H 1.09000 * 109.46866 * 59.99970 * 7 6 5 28 28 H 1.09001 * 109.46611 * 300.00087 * 7 6 5 29 29 H 1.09000 * 109.47486 * 60.00167 * 8 7 6 30 30 H 1.09001 * 109.47362 * 299.99445 * 8 7 6 31 31 H 0.96996 * 119.99710 * 179.97438 * 13 12 10 32 32 H 1.08996 * 117.49972 * 215.00576 * 18 2 1 33 33 H 1.09003 * 117.49860 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2201 1.5320 0.5902 5 8 1.6034 2.3791 -0.6556 6 6 2.2857 3.6601 -0.6132 7 6 1.4849 4.6912 -1.4110 8 6 2.2042 6.0408 -1.3668 9 16 1.2564 7.2607 -2.3100 10 6 2.2824 8.6772 -2.0960 11 1 3.1899 8.6039 -1.5152 12 6 1.9236 9.8875 -2.6731 13 7 2.6898 10.9458 -2.5128 14 14 0.3535 10.0145 -3.6772 15 1 -0.7745 10.3886 -2.7868 16 1 0.5200 11.0512 -4.7273 17 1 0.0669 8.7048 -4.3156 18 6 2.2364 -1.1208 0.7655 19 6 2.2369 -1.1210 -0.7645 20 9 1.4348 -2.0676 -1.4108 21 9 3.4373 -0.8054 -1.4102 22 1 -0.3633 0.8478 -0.5809 23 1 -0.3633 -0.9269 -0.4438 24 1 -0.3634 0.0791 1.0246 25 1 3.2798 3.5568 -1.0483 26 1 2.3747 3.9903 0.4218 27 1 0.4907 4.7945 -0.9763 28 1 1.3964 4.3607 -2.4459 29 1 3.1983 5.9372 -1.8018 30 1 2.2931 6.3715 -0.3320 31 1 2.4392 11.7915 -2.9164 32 1 3.1712 -0.8747 1.2690 33 1 1.6111 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817252486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:35 Heat of formation + Delta-G solvation = -186.942128 kcal Electronic energy + Delta-G solvation = -19016.704093 eV Core-core repulsion = 15418.639439 eV Total energy + Delta-G solvation = -3598.064655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.93031 -48.60831 -41.85335 -38.58158 -37.30029 -34.99244 -34.69504 -29.93441 -28.32881 -27.76614 -25.16790 -23.76247 -22.80847 -21.28046 -19.67240 -19.31319 -18.55093 -18.40384 -17.72329 -17.25185 -17.11637 -16.61159 -16.11672 -15.83428 -15.25027 -14.98875 -14.88368 -14.70515 -14.56582 -14.32174 -14.08094 -13.93053 -13.47164 -13.37073 -13.27983 -13.05783 -12.66092 -12.47921 -12.30529 -12.01873 -11.85853 -11.67576 -11.59227 -11.17574 -11.10736 -10.62220 -9.02115 -8.53207 -6.25631 0.58627 0.99625 1.27066 1.32484 1.48120 1.74151 1.83305 1.99376 2.23956 2.64095 2.84970 2.86526 3.18593 3.33670 3.44558 3.78745 3.88362 4.04460 4.13759 4.24681 4.41670 4.49114 4.61589 4.66210 4.74604 4.77134 4.95062 5.01669 5.20499 5.26955 5.68266 6.09192 6.42006 6.90381 8.59969 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.002850 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.746365 B = 9822.442387 C =10038.940497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.148 4.148 3 C 0.493 3.507 4 O -0.519 6.519 5 O -0.345 6.345 6 C 0.077 3.923 7 C -0.087 4.087 8 C -0.075 4.075 9 S -0.205 6.205 10 C -0.526 4.526 11 H 0.051 0.949 12 C 0.037 3.963 13 N -0.923 5.923 14 Si 0.926 3.074 15 H -0.260 1.260 16 H -0.264 1.264 17 H -0.227 1.227 18 C -0.108 4.108 19 C 0.208 3.792 20 F -0.147 7.147 21 F -0.171 7.171 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.277 0.723 32 H 0.136 0.864 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.432 -27.580 6.330 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.150 4.150 3 C 0.336 3.664 4 O -0.408 6.408 5 O -0.261 6.261 6 C 0.002 3.998 7 C -0.126 4.126 8 C -0.223 4.223 9 S 0.023 5.977 10 C -0.674 4.674 11 H 0.069 0.931 12 C -0.168 4.168 13 N -0.561 5.561 14 Si 0.747 3.253 15 H -0.184 1.184 16 H -0.188 1.188 17 H -0.150 1.150 18 C -0.145 4.145 19 C 0.171 3.829 20 F -0.128 7.128 21 F -0.152 7.152 22 H 0.095 0.905 23 H 0.112 0.888 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.038 -27.401 5.837 28.886 hybrid contribution 1.524 1.122 0.031 1.893 sum -5.514 -26.279 5.868 27.485 Atomic orbital electron populations 1.21502 0.85310 1.05214 1.05526 1.22699 1.00464 0.85820 1.06022 1.22506 0.82307 0.86396 0.75142 1.90690 1.23636 1.84373 1.42102 1.86409 1.52521 1.19855 1.67322 1.23132 0.95800 0.78888 1.01984 1.21151 0.99659 0.89890 1.01895 1.22974 1.01265 0.95865 1.02233 1.83809 1.37056 1.06703 1.70137 1.22354 1.10397 0.95938 1.38663 0.93076 1.25804 1.00619 0.94026 0.96314 1.70043 1.39709 1.01580 1.44738 0.85701 0.78921 0.81074 0.79586 1.18416 1.18815 1.15017 1.24777 1.04739 0.96327 0.88673 1.20207 0.79684 0.91984 0.90979 1.93050 1.71964 1.64009 1.83741 1.93054 1.45348 1.92746 1.84037 0.90455 0.88805 0.88108 0.90984 0.90133 0.89153 0.89758 0.91138 0.90831 0.91344 0.84612 0.80309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.78 71.98 0.70 -0.50 16 2 C -0.15 -2.28 2.64 -52.93 -0.14 -2.42 16 3 C 0.49 11.50 7.13 71.23 0.51 12.01 16 4 O -0.52 -14.69 16.01 21.95 0.35 -14.34 16 5 O -0.35 -8.40 9.49 -51.34 -0.49 -8.89 16 6 C 0.08 1.97 5.47 71.98 0.39 2.36 16 7 C -0.09 -2.45 5.60 30.60 0.17 -2.28 16 8 C -0.07 -2.75 5.67 71.98 0.41 -2.34 16 9 S -0.21 -9.62 19.41 -56.49 -1.10 -10.72 16 10 C -0.53 -30.77 10.04 67.95 0.68 -30.09 16 11 H 0.05 3.26 8.03 -2.91 -0.02 3.24 16 12 C 0.04 2.17 5.50 84.86 0.47 2.63 16 13 N -0.92 -56.73 13.97 21.65 0.30 -56.43 16 14 Si 0.93 43.51 27.74 68.60 1.90 45.41 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.23 -10.19 6.74 99.48 0.67 -9.52 16 18 C -0.11 -1.08 9.73 30.59 0.30 -0.79 16 19 C 0.21 3.46 5.13 30.59 0.16 3.62 16 20 F -0.15 -2.36 16.50 44.97 0.74 -1.61 16 21 F -0.17 -3.97 17.13 44.97 0.77 -3.20 16 22 H 0.08 0.97 7.50 -2.38 -0.02 0.95 16 23 H 0.09 0.71 7.10 -2.39 -0.02 0.69 16 24 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 26 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 31 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.14 1.51 7.67 -2.39 -0.02 1.50 16 33 H 0.18 0.32 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -70.43 311.63 7.22 -63.22 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.08 Total: 4.35 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 3.65 Total: -17.79 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.43 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.14 Total: -23.23 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 1.51 Total: -4.81 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.90 Total: 45.41 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.10 Total: -10.72 kcal Total: -70.43 7.22 -63.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817252486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.726 kcal (2) G-P(sol) polarization free energy of solvation -70.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds