Wall clock time and date at job start Tue Mar 31 2020 01:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46465 * 215.66040 * 3 2 1 5 5 C 1.36977 * 119.99877 * 96.07504 * 4 3 2 6 6 H 1.07999 * 119.99964 * 162.13787 * 5 4 3 7 7 C 1.38915 * 120.00095 * 342.14103 * 5 4 3 8 8 N 1.31472 * 119.99878 * 338.89535 * 7 5 4 9 9 Si 1.86797 * 120.00340 * 158.90147 * 7 5 4 10 10 H 1.48503 * 109.46993 * 269.99692 * 9 7 5 11 11 H 1.48504 * 109.47080 * 29.99555 * 9 7 5 12 12 H 1.48498 * 109.47403 * 149.99511 * 9 7 5 13 13 C 1.34777 * 120.00280 * 276.07048 * 4 3 2 14 14 O 1.21937 * 120.00192 * 180.02562 * 13 4 3 15 15 C 1.40303 * 120.00005 * 0.02562 * 13 4 3 16 16 C 1.36556 * 120.00343 * 179.97438 * 15 13 4 17 17 S 1.77255 * 126.26379 * 0.02761 * 16 15 13 18 18 C 1.82388 * 94.46698 * 179.97438 * 17 16 15 19 19 C 1.51124 * 103.49176 * 359.97438 * 18 17 16 20 20 O 1.21249 * 122.89519 * 180.02562 * 19 18 17 21 21 N 1.32210 * 114.20039 * 359.74374 * 19 18 17 22 22 C 1.46502 * 119.81501 * 180.26850 * 21 19 18 23 23 H 4.40637 * 5.51467 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.46786 * 95.66538 * 3 2 1 25 25 H 1.08999 * 109.47362 * 335.65738 * 3 2 1 26 26 H 0.96993 * 119.99993 * 180.02562 * 8 7 5 27 27 H 1.08004 * 119.99588 * 359.97438 * 15 13 4 28 28 H 1.08995 * 110.62049 * 118.50339 * 18 17 16 29 29 H 1.09004 * 110.61499 * 241.50343 * 18 17 16 30 30 H 1.08999 * 109.46979 * 270.24011 * 22 21 19 31 31 H 1.09006 * 109.47093 * 30.23885 * 22 21 19 32 32 H 1.09001 * 109.46955 * 150.23985 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1232 0.8053 5 6 3.4804 0.9263 2.1157 6 1 4.0982 1.6507 2.6256 7 6 3.0374 -0.2052 2.7889 8 7 1.9859 -0.8614 2.3506 9 14 3.9356 -0.7944 4.3172 10 1 5.0038 -1.7491 3.9263 11 1 4.5418 0.3684 5.0142 12 1 2.9755 -1.4708 5.2259 13 6 3.2414 2.3495 0.2567 14 8 3.6477 3.2837 0.9268 15 6 2.8859 2.5513 -1.0855 16 6 2.9944 3.7939 -1.6412 17 16 3.5622 5.2615 -0.8252 18 6 3.3604 6.3267 -2.2919 19 6 2.8372 5.3791 -3.3465 20 8 2.5784 5.7307 -4.4777 21 7 2.6916 4.1325 -2.9309 22 6 2.1975 3.1094 -3.8557 23 1 -1.0502 -0.0002 -0.0004 24 1 3.0093 0.1023 -1.0226 25 1 3.0098 -0.9355 0.4236 26 1 1.6764 -1.6512 2.8208 27 1 2.5264 1.7238 -1.6791 28 1 2.6382 7.1187 -2.0946 29 1 4.3192 6.7470 -2.5958 30 1 1.1096 3.0665 -3.8025 31 1 2.5020 3.3604 -4.8718 32 1 2.6132 2.1400 -3.5808 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822679753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:48 Heat of formation + Delta-G solvation = 46.162685 kcal Electronic energy + Delta-G solvation = -19372.345195 eV Core-core repulsion = 16235.077910 eV Total energy + Delta-G solvation = -3137.267285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82510 -38.92040 -36.74510 -35.26977 -32.36600 -31.32063 -31.17538 -30.61537 -26.99722 -26.50740 -25.20917 -23.09450 -20.03276 -19.17662 -18.00596 -17.81904 -16.65308 -16.58865 -16.51788 -15.91294 -14.89179 -14.77195 -14.20375 -14.03165 -13.95387 -13.87616 -13.02310 -12.79465 -12.56848 -12.45432 -12.35206 -11.70314 -11.48891 -11.31579 -11.07830 -10.86197 -10.58218 -10.41112 -10.09877 -9.44164 -9.39357 -8.98845 -8.58799 -8.38995 -7.99989 -7.28027 -6.48314 -3.90470 1.20753 1.57490 2.10566 2.51252 2.80858 3.12587 3.19970 3.24758 3.68951 3.94970 4.05875 4.13267 4.28554 4.96126 4.99168 5.01795 5.07865 5.26626 5.34118 5.36648 5.48883 5.57879 5.85107 6.13126 6.23922 6.40581 6.64382 6.94339 7.00203 7.43035 7.61594 7.96594 8.31804 8.73543 9.02609 9.22237 9.82181 10.51171 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.005255 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.294471 B = 5326.519036 C = 6114.919618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.117 4.117 3 C 0.229 3.771 4 N -0.421 5.421 5 C -0.300 4.300 6 H 0.110 0.890 7 C 0.029 3.971 8 N -0.852 5.852 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.267 1.267 12 H -0.284 1.284 13 C 0.474 3.526 14 O -0.579 6.579 15 C -0.193 4.193 16 C 0.119 3.881 17 S 0.026 5.974 18 C -0.200 4.200 19 C 0.523 3.477 20 O -0.512 6.512 21 N -0.541 5.541 22 C 0.068 3.932 23 H 0.199 0.801 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.271 0.729 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 3.543 -9.020 9.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.119 4.119 3 C 0.106 3.894 4 N -0.138 5.138 5 C -0.428 4.428 6 H 0.128 0.872 7 C -0.177 4.177 8 N -0.489 5.489 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.192 1.192 12 H -0.210 1.210 13 C 0.268 3.732 14 O -0.468 6.468 15 C -0.230 4.230 16 C -0.093 4.093 17 S 0.265 5.735 18 C -0.350 4.350 19 C 0.310 3.690 20 O -0.388 6.388 21 N -0.263 5.263 22 C -0.076 4.076 23 H 0.216 0.784 24 H 0.082 0.918 25 H 0.129 0.871 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.921 4.401 -8.119 9.281 hybrid contribution -0.663 -1.034 -0.463 1.313 sum 0.257 3.366 -8.582 9.222 Atomic orbital electron populations 1.24288 0.95381 1.02676 1.05030 1.23111 0.94286 0.98214 0.96253 1.18335 0.84387 0.93233 0.93437 1.43657 1.53844 1.05460 1.10799 1.19809 1.28736 1.07335 0.86897 0.87229 1.25397 0.95179 0.97524 0.99568 1.70115 1.19210 1.18787 1.40783 0.85923 0.79101 0.79146 0.80639 1.20162 1.19162 1.20987 1.15926 0.86756 0.83417 0.87098 1.90623 1.53029 1.39620 1.63493 1.21072 1.10281 0.93667 0.97938 1.22057 1.03114 0.98997 0.85129 1.87975 1.80242 0.96391 1.08863 1.24669 1.07673 1.03046 0.99610 1.19794 0.77966 0.82123 0.89083 1.90750 1.50664 1.77735 1.19644 1.44463 1.60887 1.10376 1.10567 1.22028 1.00507 0.91320 0.93740 0.78359 0.91774 0.87108 0.91814 0.84876 0.84775 0.84731 0.91046 0.89562 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.05 19.25 29.55 0.57 -4.48 16 2 C -0.12 -2.49 11.16 -37.12 -0.41 -2.91 16 3 C 0.23 4.78 4.78 -6.83 -0.03 4.75 16 4 N -0.42 -10.17 2.60 -121.58 -0.32 -10.49 16 5 C -0.30 -7.84 9.32 -15.00 -0.14 -7.98 16 6 H 0.11 3.02 7.38 -52.49 -0.39 2.63 16 7 C 0.03 0.72 4.87 -17.45 -0.09 0.63 16 8 N -0.85 -21.26 9.48 55.50 0.53 -20.73 16 9 Si 0.93 19.51 29.60 -169.99 -5.03 14.47 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.47 11.15 7.30 -15.48 -0.11 11.04 16 14 O -0.58 -15.12 13.75 4.98 0.07 -15.05 16 15 C -0.19 -3.66 8.27 -39.41 -0.33 -3.98 16 16 C 0.12 2.07 7.00 -15.97 -0.11 1.96 16 17 S 0.03 0.45 20.64 -107.50 -2.22 -1.77 16 18 C -0.20 -2.52 7.36 36.21 0.27 -2.25 16 19 C 0.52 7.77 7.79 -11.91 -0.09 7.68 16 20 O -0.51 -8.54 16.94 5.58 0.09 -8.45 16 21 N -0.54 -8.09 2.95 -122.23 -0.36 -8.45 16 22 C 0.07 0.81 10.06 59.85 0.60 1.41 16 23 H 0.20 3.21 7.80 -54.08 -0.42 2.78 16 24 H 0.06 1.09 6.44 -51.93 -0.33 0.76 16 25 H 0.11 2.42 6.44 -51.93 -0.33 2.09 16 26 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 27 H 0.13 2.19 4.69 -52.48 -0.25 1.94 16 28 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.96 7.50 -51.93 -0.39 0.57 16 32 H 0.09 0.91 6.61 -51.93 -0.34 0.57 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -30.96 294.06 -5.54 -36.51 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.86 Total: 3.65 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.12 Total: 5.88 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.15 Total: -39.67 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.50 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.47 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.22 Total: -1.77 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.96 -5.54 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822679753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.669 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds