Wall clock time and date at job start Tue Mar 31 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46465 * 215.66040 * 3 2 1 5 5 C 1.36977 * 119.99877 * 96.07504 * 4 3 2 6 6 H 1.07999 * 119.99964 * 162.13787 * 5 4 3 7 7 C 1.38915 * 120.00095 * 342.14103 * 5 4 3 8 8 N 1.31472 * 119.99878 * 338.89535 * 7 5 4 9 9 Si 1.86797 * 120.00340 * 158.90147 * 7 5 4 10 10 H 1.48503 * 109.46993 * 269.99692 * 9 7 5 11 11 H 1.48504 * 109.47080 * 29.99555 * 9 7 5 12 12 H 1.48498 * 109.47403 * 149.99511 * 9 7 5 13 13 C 1.34777 * 120.00280 * 276.07048 * 4 3 2 14 14 O 1.21937 * 120.00192 * 180.02562 * 13 4 3 15 15 C 1.40303 * 120.00005 * 0.02562 * 13 4 3 16 16 C 1.36556 * 120.00343 * 179.97438 * 15 13 4 17 17 S 1.77255 * 126.26379 * 0.02761 * 16 15 13 18 18 C 1.82388 * 94.46698 * 179.97438 * 17 16 15 19 19 C 1.51124 * 103.49176 * 359.97438 * 18 17 16 20 20 O 1.21249 * 122.89519 * 180.02562 * 19 18 17 21 21 N 1.32210 * 114.20039 * 359.74374 * 19 18 17 22 22 C 1.46502 * 119.81501 * 180.26850 * 21 19 18 23 23 H 4.40637 * 5.51467 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.46786 * 95.66538 * 3 2 1 25 25 H 1.08999 * 109.47362 * 335.65738 * 3 2 1 26 26 H 0.96993 * 119.99993 * 180.02562 * 8 7 5 27 27 H 1.08004 * 119.99588 * 359.97438 * 15 13 4 28 28 H 1.08995 * 110.62049 * 118.50339 * 18 17 16 29 29 H 1.09004 * 110.61499 * 241.50343 * 18 17 16 30 30 H 1.08999 * 109.46979 * 270.24011 * 22 21 19 31 31 H 1.09006 * 109.47093 * 30.23885 * 22 21 19 32 32 H 1.09001 * 109.46955 * 150.23985 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1232 0.8053 5 6 3.4804 0.9263 2.1157 6 1 4.0982 1.6507 2.6256 7 6 3.0374 -0.2052 2.7889 8 7 1.9859 -0.8614 2.3506 9 14 3.9356 -0.7944 4.3172 10 1 5.0038 -1.7491 3.9263 11 1 4.5418 0.3684 5.0142 12 1 2.9755 -1.4708 5.2259 13 6 3.2414 2.3495 0.2567 14 8 3.6477 3.2837 0.9268 15 6 2.8859 2.5513 -1.0855 16 6 2.9944 3.7939 -1.6412 17 16 3.5622 5.2615 -0.8252 18 6 3.3604 6.3267 -2.2919 19 6 2.8372 5.3791 -3.3465 20 8 2.5784 5.7307 -4.4777 21 7 2.6916 4.1325 -2.9309 22 6 2.1975 3.1094 -3.8557 23 1 -1.0502 -0.0002 -0.0004 24 1 3.0093 0.1023 -1.0226 25 1 3.0098 -0.9355 0.4236 26 1 1.6764 -1.6512 2.8208 27 1 2.5264 1.7238 -1.6791 28 1 2.6382 7.1187 -2.0946 29 1 4.3192 6.7470 -2.5958 30 1 1.1096 3.0665 -3.8025 31 1 2.5020 3.3604 -4.8718 32 1 2.6132 2.1400 -3.5808 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822679753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:47 Heat of formation + Delta-G solvation = 27.006580 kcal Electronic energy + Delta-G solvation = -19373.175866 eV Core-core repulsion = 16235.077910 eV Total energy + Delta-G solvation = -3138.097956 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07314 -40.62771 -38.07063 -37.02185 -34.10130 -32.99612 -32.51331 -31.86832 -28.40998 -27.90486 -26.82252 -24.61718 -21.39895 -20.63330 -19.67633 -19.18336 -18.28552 -18.04137 -17.72239 -17.36920 -16.55982 -16.30758 -15.84308 -15.55028 -15.26628 -14.88547 -14.65165 -14.29604 -14.04527 -13.78747 -13.48670 -13.33793 -12.97439 -12.71081 -12.60008 -12.40031 -12.18560 -12.07787 -11.42725 -11.15515 -11.04128 -10.60841 -10.14188 -9.91140 -9.80979 -8.70293 -8.31241 -5.83649 -0.19898 0.25426 0.89038 1.24942 1.45280 1.46542 1.54002 1.60121 2.09298 2.33786 2.42319 2.55045 2.87447 3.18195 3.43492 3.90303 4.05466 4.10037 4.14929 4.33455 4.40058 4.47283 4.63613 4.69131 4.76508 5.00242 5.05337 5.45013 5.49944 5.73133 6.10817 6.40571 6.49479 7.16935 7.18598 7.44147 8.03502 8.66557 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.005255 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.294471 B = 5326.519036 C = 6114.919618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.152 4.152 3 C 0.232 3.768 4 N -0.440 5.440 5 C -0.338 4.338 6 H 0.080 0.920 7 C 0.002 3.998 8 N -0.868 5.868 9 Si 0.984 3.016 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.473 3.527 14 O -0.617 6.617 15 C -0.221 4.221 16 C 0.154 3.846 17 S -0.023 6.023 18 C -0.176 4.176 19 C 0.523 3.477 20 O -0.524 6.524 21 N -0.542 5.542 22 C 0.059 3.941 23 H 0.230 0.770 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.273 0.727 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 4.109 -10.742 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.153 4.153 3 C 0.110 3.890 4 N -0.156 5.156 5 C -0.466 4.466 6 H 0.097 0.903 7 C -0.202 4.202 8 N -0.505 5.505 9 Si 0.809 3.191 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.268 3.732 14 O -0.508 6.508 15 C -0.258 4.258 16 C -0.060 4.060 17 S 0.217 5.783 18 C -0.326 4.326 19 C 0.312 3.688 20 O -0.401 6.401 21 N -0.264 5.264 22 C -0.084 4.084 23 H 0.247 0.753 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.175 0.825 28 H 0.180 0.820 29 H 0.183 0.817 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.387 4.958 -9.874 11.056 hybrid contribution -0.526 -0.937 -0.135 1.083 sum -0.138 4.021 -10.009 10.787 Atomic orbital electron populations 1.25108 0.96335 1.01264 1.03746 1.23427 0.94939 0.99501 0.97477 1.18376 0.84576 0.91489 0.94561 1.43748 1.54876 1.06524 1.10474 1.19616 1.30391 1.08075 0.88481 0.90256 1.25979 0.95455 0.97022 1.01740 1.70197 1.19658 1.18919 1.41693 0.85066 0.78228 0.78269 0.77585 1.18960 1.20218 1.20502 1.16549 0.85270 0.82853 0.88521 1.90600 1.54204 1.40884 1.65105 1.20774 1.13384 0.95231 0.96385 1.22098 0.99641 0.98418 0.85819 1.88215 1.79804 0.97960 1.12316 1.24805 1.09977 1.02076 0.95770 1.20100 0.77342 0.82209 0.89156 1.90765 1.51177 1.77871 1.20281 1.44652 1.60443 1.11343 1.09931 1.22307 1.01306 0.91230 0.93546 0.75299 0.88269 0.88795 0.91727 0.82468 0.82010 0.81726 0.89978 0.88544 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.41 19.25 74.32 1.43 -7.98 16 2 C -0.15 -6.40 11.16 31.13 0.35 -6.05 16 3 C 0.23 9.75 4.78 84.57 0.40 10.16 16 4 N -0.44 -21.81 2.60 -656.68 -1.71 -23.52 16 5 C -0.34 -18.42 9.32 84.05 0.78 -17.64 16 6 H 0.08 4.67 7.38 -2.91 -0.02 4.65 16 7 C 0.00 0.10 4.87 84.91 0.41 0.52 16 8 N -0.87 -43.86 9.48 21.66 0.21 -43.66 16 9 Si 0.98 40.92 29.60 68.60 2.03 42.95 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 13 C 0.47 22.72 7.30 84.74 0.62 23.33 16 14 O -0.62 -33.35 13.75 -5.11 -0.07 -33.43 16 15 C -0.22 -8.20 8.27 22.38 0.19 -8.02 16 16 C 0.15 5.13 7.00 83.54 0.59 5.71 16 17 S -0.02 -0.76 20.64 -56.49 -1.17 -1.93 16 18 C -0.18 -3.82 7.36 71.37 0.53 -3.30 16 19 C 0.52 13.83 7.79 88.19 0.69 14.51 16 20 O -0.52 -15.69 16.94 -2.93 -0.05 -15.74 16 21 N -0.54 -14.73 2.95 -660.46 -1.95 -16.67 16 22 C 0.06 1.23 10.06 127.77 1.29 2.51 16 23 H 0.23 6.83 7.80 -4.41 -0.03 6.80 16 24 H 0.10 3.31 6.44 -2.39 -0.02 3.29 16 25 H 0.09 4.20 6.44 -2.39 -0.02 4.19 16 26 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 27 H 0.16 4.90 4.69 -2.91 -0.01 4.89 16 28 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.17 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.84 7.50 -2.38 -0.02 1.83 16 32 H 0.10 1.82 6.61 -2.39 -0.02 1.81 16 Total: -1.00 -68.68 294.06 5.72 -62.96 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.16 Total: 15.26 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 7.27 Total: 13.77 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.45 Total: -83.84 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.12 Total: -49.17 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.17 Total: -1.93 kcal Total: -68.68 5.72 -62.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822679753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.969 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds