Wall clock time and date at job start Tue Mar 31 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47141 * 53.45144 * 3 2 1 5 5 C 1.36970 * 120.00048 * 269.99555 * 4 3 2 6 6 H 1.07996 * 119.99601 * 145.17796 * 5 4 3 7 7 C 1.38915 * 120.00146 * 325.18480 * 5 4 3 8 8 N 1.31464 * 120.00037 * 159.16273 * 7 5 4 9 9 Si 1.86797 * 119.99874 * 339.14942 * 7 5 4 10 10 H 1.48501 * 109.46773 * 90.16213 * 9 7 5 11 11 H 1.48506 * 109.47142 * 210.15566 * 9 7 5 12 12 H 1.48491 * 109.47463 * 330.15733 * 9 7 5 13 13 C 1.34774 * 119.99763 * 90.00366 * 4 3 2 14 14 O 1.21940 * 119.99833 * 355.85421 * 13 4 3 15 15 C 1.40294 * 119.99945 * 175.85875 * 13 4 3 16 16 C 1.36568 * 119.99911 * 183.90955 * 15 13 4 17 17 S 1.77251 * 126.26666 * 140.86776 * 16 15 13 18 18 C 1.82384 * 94.46910 * 179.97438 * 17 16 15 19 19 C 1.51115 * 103.49069 * 0.32714 * 18 17 16 20 20 O 1.21260 * 122.89676 * 179.75468 * 19 18 17 21 21 N 1.32218 * 114.20426 * 359.74895 * 19 18 17 22 22 C 1.46492 * 119.81673 * 180.02562 * 21 19 18 23 23 H 4.40637 * 5.51505 * 180.02562 * 4 1 2 24 24 H 1.08994 * 109.46693 * 173.45395 * 3 2 1 25 25 H 1.09008 * 109.46853 * 293.45280 * 3 2 1 26 26 H 0.97000 * 120.00311 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.00284 * 3.90691 * 15 13 4 28 28 H 1.09006 * 110.82917 * 241.72369 * 18 17 16 29 29 H 1.08999 * 110.53851 * 118.79179 * 18 17 16 30 30 H 1.09004 * 109.47419 * 276.40291 * 22 21 19 31 31 H 1.09001 * 109.47444 * 36.39955 * 22 21 19 32 32 H 1.08996 * 109.47375 * 156.40176 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8216 -1.1096 5 6 3.3637 -2.1590 -0.9219 6 1 3.1721 -2.8572 -1.7232 7 6 3.8422 -2.6171 0.2991 8 7 3.6822 -3.8775 0.6367 9 14 4.7133 -1.4423 1.4611 10 1 3.7192 -0.8177 2.3704 11 1 5.7153 -2.1904 2.2621 12 1 5.3978 -0.3849 0.6747 13 6 3.3591 -0.2622 -2.3150 14 8 3.0842 0.9108 -2.5034 15 6 3.9089 -1.0293 -3.3530 16 6 4.2106 -0.4434 -4.5492 17 16 5.6318 -0.7808 -5.5532 18 6 5.1738 0.4130 -6.8537 19 6 3.8789 1.0055 -6.3481 20 8 3.2631 1.8565 -6.9540 21 7 3.4752 0.5160 -5.1881 22 6 2.2328 1.0038 -4.5844 23 1 -1.0499 0.0000 -0.0004 24 1 3.0088 1.0218 -0.1172 25 1 3.0095 -0.4082 0.9429 26 1 4.0166 -4.1976 1.4891 27 1 4.0937 -2.0833 -3.2062 28 1 5.0183 -0.0927 -7.8067 29 1 5.9373 1.1849 -6.9502 30 1 2.4327 1.9232 -4.0341 31 1 1.5011 1.2011 -5.3678 32 1 1.8400 0.2501 -3.9019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822679754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:50 Heat of formation + Delta-G solvation = 68.897315 kcal Electronic energy + Delta-G solvation = -19633.817098 eV Core-core repulsion = 16497.535661 eV Total energy + Delta-G solvation = -3136.281437 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91341 -39.18515 -36.73515 -35.16998 -32.82592 -31.88663 -31.23589 -30.64402 -27.35030 -26.30910 -25.22431 -22.97909 -20.50435 -18.83222 -18.56136 -17.99741 -17.21384 -16.58404 -16.22850 -15.91720 -15.64534 -14.89127 -14.40689 -14.22232 -13.84316 -13.50194 -13.29099 -13.01574 -12.83370 -12.75932 -12.36048 -11.80166 -11.44734 -11.18010 -11.14742 -10.90566 -10.81397 -10.30327 -10.18707 -9.85610 -9.53245 -9.17525 -8.62008 -8.60163 -8.10942 -7.26487 -6.67736 -4.18751 0.83027 1.27880 1.72976 2.52056 2.89563 2.93748 3.09438 3.15198 3.28223 3.47954 3.92737 3.96590 4.14072 4.60651 4.77122 4.80461 5.05243 5.11078 5.54796 5.67995 5.89332 5.94725 6.03101 6.30419 6.39784 6.47524 6.49620 6.55061 7.10959 7.19251 7.66855 7.86887 8.05277 8.22022 8.75219 9.13847 9.50787 10.41795 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.006137 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.425154 B = 4561.309435 C = 5398.144761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.162 4.162 3 C 0.197 3.803 4 N -0.444 5.444 5 C -0.335 4.335 6 H 0.111 0.889 7 C 0.065 3.935 8 N -0.845 5.845 9 Si 0.874 3.126 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.256 1.256 13 C 0.510 3.490 14 O -0.610 6.610 15 C -0.204 4.204 16 C 0.164 3.836 17 S -0.085 6.085 18 C -0.144 4.144 19 C 0.513 3.487 20 O -0.503 6.503 21 N -0.522 5.522 22 C 0.099 3.901 23 H 0.212 0.788 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.279 0.721 27 H 0.161 0.839 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 4.343 -7.510 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.163 4.163 3 C 0.075 3.925 4 N -0.162 5.162 5 C -0.462 4.462 6 H 0.129 0.871 7 C -0.144 4.144 8 N -0.479 5.479 9 Si 0.702 3.298 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.180 1.180 13 C 0.305 3.695 14 O -0.501 6.501 15 C -0.240 4.240 16 C -0.050 4.050 17 S 0.155 5.845 18 C -0.295 4.295 19 C 0.300 3.700 20 O -0.379 6.379 21 N -0.242 5.242 22 C -0.044 4.044 23 H 0.229 0.771 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.179 0.821 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.628 4.467 -7.823 9.384 hybrid contribution -0.734 0.874 0.767 1.375 sum 1.894 5.341 -7.057 9.050 Atomic orbital electron populations 1.24642 0.95609 1.02579 1.01563 1.23555 0.94697 0.98685 0.99364 1.18758 0.84248 0.97360 0.92176 1.43677 1.54908 1.08870 1.08722 1.19170 1.44525 0.80607 1.01882 0.87139 1.25383 0.95616 0.96021 0.97377 1.69756 1.40193 1.15379 1.22549 0.87045 0.80100 0.81589 0.81083 1.19648 1.20935 1.17981 1.16401 0.82122 0.86935 0.84052 1.90783 1.58532 1.17799 1.82943 1.21094 1.11842 1.00748 0.90349 1.22046 0.97234 0.89382 0.96363 1.86873 1.24078 1.53106 1.20400 1.24352 0.99723 1.02513 1.02953 1.19705 0.86362 0.82535 0.81423 1.90773 1.57940 1.30015 1.59178 1.44942 1.23363 1.37602 1.18293 1.22332 0.82209 1.03010 0.96865 0.77105 0.88533 0.89290 0.91025 0.82144 0.84435 0.83973 0.89008 0.92791 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.13 19.25 29.55 0.57 -3.56 16 2 C -0.16 -3.41 13.67 -37.12 -0.51 -3.91 16 3 C 0.20 4.28 4.65 -6.83 -0.03 4.25 16 4 N -0.44 -10.23 2.19 -121.58 -0.27 -10.50 16 5 C -0.33 -8.22 8.91 -15.01 -0.13 -8.36 16 6 H 0.11 2.81 6.88 -52.49 -0.36 2.45 16 7 C 0.07 1.62 5.35 -17.46 -0.09 1.53 16 8 N -0.84 -22.01 13.96 55.49 0.77 -21.24 16 9 Si 0.87 19.04 25.03 -169.99 -4.25 14.79 16 10 H -0.27 -5.62 6.45 56.52 0.36 -5.25 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 13 C 0.51 11.22 6.31 -15.49 -0.10 11.12 16 14 O -0.61 -13.80 11.23 4.97 0.06 -13.75 16 15 C -0.20 -3.98 8.68 -39.41 -0.34 -4.32 16 16 C 0.16 2.83 6.68 -15.97 -0.11 2.72 16 17 S -0.09 -1.15 23.35 -107.50 -2.51 -3.66 16 18 C -0.14 -1.61 7.36 36.21 0.27 -1.34 16 19 C 0.51 7.98 7.79 -11.91 -0.09 7.89 16 20 O -0.50 -8.99 17.04 5.57 0.09 -8.90 16 21 N -0.52 -8.93 2.92 -122.24 -0.36 -9.29 16 22 C 0.10 1.75 8.18 59.84 0.49 2.24 16 23 H 0.21 2.89 7.80 -54.10 -0.42 2.47 16 24 H 0.10 2.00 7.48 -51.93 -0.39 1.61 16 25 H 0.09 1.95 2.62 -51.92 -0.14 1.82 16 26 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.16 3.09 6.36 -52.48 -0.33 2.76 16 28 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.77 6.66 -51.93 -0.35 1.42 16 31 H 0.05 0.88 7.68 -51.93 -0.40 0.48 16 32 H 0.09 1.73 5.61 -51.93 -0.29 1.44 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -28.68 288.93 -4.88 -33.56 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -2.69 Total: 6.36 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.08 Total: 8.26 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.15 Total: -41.02 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.15 Total: -22.64 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.25 Total: 14.79 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.51 Total: -3.66 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.68 -4.88 -33.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822679754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.461 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds