Wall clock time and date at job start Tue Mar 31 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47141 * 53.45144 * 3 2 1 5 5 C 1.36970 * 120.00048 * 269.99555 * 4 3 2 6 6 H 1.07996 * 119.99601 * 145.17796 * 5 4 3 7 7 C 1.38915 * 120.00146 * 325.18480 * 5 4 3 8 8 N 1.31464 * 120.00037 * 159.16273 * 7 5 4 9 9 Si 1.86797 * 119.99874 * 339.14942 * 7 5 4 10 10 H 1.48501 * 109.46773 * 90.16213 * 9 7 5 11 11 H 1.48506 * 109.47142 * 210.15566 * 9 7 5 12 12 H 1.48491 * 109.47463 * 330.15733 * 9 7 5 13 13 C 1.34774 * 119.99763 * 90.00366 * 4 3 2 14 14 O 1.21940 * 119.99833 * 355.85421 * 13 4 3 15 15 C 1.40294 * 119.99945 * 175.85875 * 13 4 3 16 16 C 1.36568 * 119.99911 * 183.90955 * 15 13 4 17 17 S 1.77251 * 126.26666 * 140.86776 * 16 15 13 18 18 C 1.82384 * 94.46910 * 179.97438 * 17 16 15 19 19 C 1.51115 * 103.49069 * 0.32714 * 18 17 16 20 20 O 1.21260 * 122.89676 * 179.75468 * 19 18 17 21 21 N 1.32218 * 114.20426 * 359.74895 * 19 18 17 22 22 C 1.46492 * 119.81673 * 180.02562 * 21 19 18 23 23 H 4.40637 * 5.51505 * 180.02562 * 4 1 2 24 24 H 1.08994 * 109.46693 * 173.45395 * 3 2 1 25 25 H 1.09008 * 109.46853 * 293.45280 * 3 2 1 26 26 H 0.97000 * 120.00311 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.00284 * 3.90691 * 15 13 4 28 28 H 1.09006 * 110.82917 * 241.72369 * 18 17 16 29 29 H 1.08999 * 110.53851 * 118.79179 * 18 17 16 30 30 H 1.09004 * 109.47419 * 276.40291 * 22 21 19 31 31 H 1.09001 * 109.47444 * 36.39955 * 22 21 19 32 32 H 1.08996 * 109.47375 * 156.40176 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8216 -1.1096 5 6 3.3637 -2.1590 -0.9219 6 1 3.1721 -2.8572 -1.7232 7 6 3.8422 -2.6171 0.2991 8 7 3.6822 -3.8775 0.6367 9 14 4.7133 -1.4423 1.4611 10 1 3.7192 -0.8177 2.3704 11 1 5.7153 -2.1904 2.2621 12 1 5.3978 -0.3849 0.6747 13 6 3.3591 -0.2622 -2.3150 14 8 3.0842 0.9108 -2.5034 15 6 3.9089 -1.0293 -3.3530 16 6 4.2106 -0.4434 -4.5492 17 16 5.6318 -0.7808 -5.5532 18 6 5.1738 0.4130 -6.8537 19 6 3.8789 1.0055 -6.3481 20 8 3.2631 1.8565 -6.9540 21 7 3.4752 0.5160 -5.1881 22 6 2.2328 1.0038 -4.5844 23 1 -1.0499 0.0000 -0.0004 24 1 3.0088 1.0218 -0.1172 25 1 3.0095 -0.4082 0.9429 26 1 4.0166 -4.1976 1.4891 27 1 4.0937 -2.0833 -3.2062 28 1 5.0183 -0.0927 -7.8067 29 1 5.9373 1.1849 -6.9502 30 1 2.4327 1.9232 -4.0341 31 1 1.5011 1.2011 -5.3678 32 1 1.8400 0.2501 -3.9019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822679754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:49 Heat of formation + Delta-G solvation = 50.706190 kcal Electronic energy + Delta-G solvation = -19634.605925 eV Core-core repulsion = 16497.535661 eV Total energy + Delta-G solvation = -3137.070264 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31282 -40.80306 -38.20952 -36.83811 -34.49478 -33.59877 -32.58312 -31.95260 -28.90975 -27.69563 -27.00244 -24.46049 -21.95577 -20.51778 -20.05628 -19.30543 -18.72890 -18.05684 -17.71480 -17.47743 -17.23233 -16.38385 -15.97690 -15.51765 -15.23204 -15.01241 -14.88602 -14.54808 -14.39679 -14.01580 -13.87221 -13.41191 -13.01007 -12.80258 -12.54957 -12.43064 -12.37919 -11.98736 -11.46274 -11.44872 -11.24752 -10.81999 -10.30220 -10.00126 -9.79779 -8.59573 -8.53256 -6.08568 -0.57008 0.03752 0.55164 1.16478 1.23129 1.33238 1.42169 1.61347 1.72909 1.93675 2.15995 2.38185 2.82701 2.96749 3.07174 3.62140 3.97809 4.07418 4.13583 4.22307 4.36785 4.37636 4.47213 4.80898 4.86258 5.01416 5.04642 5.07676 5.37255 5.81495 6.02817 6.22756 6.34539 6.71435 6.93039 7.37866 7.77652 8.60431 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.006137 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.425154 B = 4561.309435 C = 5398.144761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.226 4.226 3 C 0.196 3.804 4 N -0.462 5.462 5 C -0.334 4.334 6 H 0.088 0.912 7 C 0.028 3.972 8 N -0.890 5.890 9 Si 0.922 3.078 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.259 1.259 13 C 0.516 3.484 14 O -0.622 6.622 15 C -0.256 4.256 16 C 0.191 3.809 17 S -0.042 6.042 18 C -0.133 4.133 19 C 0.512 3.488 20 O -0.522 6.522 21 N -0.534 5.534 22 C 0.106 3.894 23 H 0.256 0.744 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.282 0.718 27 H 0.155 0.845 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 5.581 -9.709 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.227 4.227 3 C 0.074 3.926 4 N -0.182 5.182 5 C -0.462 4.462 6 H 0.106 0.894 7 C -0.177 4.177 8 N -0.526 5.526 9 Si 0.748 3.252 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.183 1.183 13 C 0.312 3.688 14 O -0.513 6.513 15 C -0.293 4.293 16 C -0.024 4.024 17 S 0.200 5.800 18 C -0.283 4.283 19 C 0.301 3.699 20 O -0.399 6.399 21 N -0.253 5.253 22 C -0.037 4.037 23 H 0.272 0.728 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.173 0.827 28 H 0.196 0.804 29 H 0.195 0.805 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.365 5.719 -10.052 12.045 hybrid contribution -0.978 0.680 1.043 1.583 sum 2.388 6.399 -9.009 11.305 Atomic orbital electron populations 1.25669 0.96510 0.99707 0.98681 1.23840 0.95452 1.01381 1.02066 1.18699 0.85311 0.97008 0.91606 1.43665 1.56705 1.08425 1.09383 1.18962 1.44599 0.81171 1.01424 0.89443 1.25870 0.96080 0.97079 0.98675 1.69825 1.42460 1.16872 1.23489 0.86275 0.79362 0.79879 0.79699 1.18403 1.20534 1.18334 1.16712 0.80775 0.87037 0.84229 1.90763 1.58965 1.18387 1.83160 1.20764 1.16159 1.00913 0.91448 1.22458 0.96583 0.87440 0.95950 1.86906 1.20516 1.52817 1.19772 1.24637 0.97617 1.02728 1.03288 1.20410 0.87415 0.81817 0.80303 1.90779 1.58937 1.30831 1.59340 1.45243 1.23294 1.37836 1.18964 1.22076 0.83135 1.01557 0.96949 0.72769 0.88488 0.89901 0.90855 0.82730 0.80382 0.80473 0.90731 0.91279 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.64 19.25 74.32 1.43 -5.21 16 2 C -0.23 -9.63 13.67 31.13 0.43 -9.21 16 3 C 0.20 8.77 4.65 84.57 0.39 9.17 16 4 N -0.46 -22.16 2.19 -656.70 -1.44 -23.60 16 5 C -0.33 -17.24 8.91 84.05 0.75 -16.49 16 6 H 0.09 4.77 6.88 -2.91 -0.02 4.75 16 7 C 0.03 1.44 5.35 84.91 0.45 1.90 16 8 N -0.89 -48.30 13.96 21.66 0.30 -48.00 16 9 Si 0.92 40.28 25.03 68.60 1.72 42.00 16 10 H -0.26 -10.61 6.45 99.48 0.64 -9.97 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 13 C 0.52 23.43 6.31 84.74 0.53 23.96 16 14 O -0.62 -28.73 11.23 -5.12 -0.06 -28.79 16 15 C -0.26 -10.19 8.68 22.38 0.19 -9.99 16 16 C 0.19 6.37 6.68 83.54 0.56 6.93 16 17 S -0.04 -0.99 23.35 -56.49 -1.32 -2.31 16 18 C -0.13 -2.24 7.36 71.37 0.53 -1.72 16 19 C 0.51 14.17 7.79 88.18 0.69 14.86 16 20 O -0.52 -17.07 17.04 -2.97 -0.05 -17.12 16 21 N -0.53 -17.34 2.92 -660.47 -1.93 -19.27 16 22 C 0.11 3.75 8.18 127.77 1.05 4.80 16 23 H 0.26 6.14 7.80 -4.42 -0.03 6.10 16 24 H 0.10 4.16 7.48 -2.39 -0.02 4.15 16 25 H 0.08 3.73 2.62 -2.38 -0.01 3.72 16 26 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.16 6.28 6.36 -2.91 -0.02 6.26 16 28 H 0.18 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.18 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.89 6.66 -2.38 -0.02 2.87 16 31 H 0.07 2.19 7.68 -2.39 -0.02 2.18 16 32 H 0.07 2.83 5.61 -2.39 -0.01 2.82 16 Total: -1.00 -65.01 288.93 5.32 -59.69 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.10 Total: 18.40 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 7.00 Total: 18.99 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -3.07 Total: -90.87 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -0.11 Total: -45.91 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.72 Total: 42.00 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -1.32 Total: -2.31 kcal Total: -65.01 5.32 -59.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822679754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.396 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds