Wall clock time and date at job start Tue Mar 31 2020 01:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48498 * 109.47114 * 269.99946 * 3 2 1 5 5 H 1.48495 * 109.46938 * 30.00533 * 3 2 1 6 6 H 1.48503 * 109.46732 * 150.00251 * 3 2 1 7 7 C 1.37874 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47469 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00072 * 11 10 9 13 13 N 1.46901 * 109.46860 * 65.00222 * 11 10 9 14 14 C 1.50701 * 109.47419 * 184.99997 * 11 10 9 15 15 N 1.30967 * 126.43368 * 104.99823 * 14 11 10 16 16 C 1.35238 * 105.57724 * 180.02562 * 15 14 11 17 17 C 1.48379 * 126.41347 * 179.97438 * 16 15 14 18 18 C 1.38798 * 121.76178 * 179.97438 * 17 16 15 19 19 C 1.34817 * 114.73306 * 180.02562 * 18 17 16 20 20 S 1.71995 * 105.76406 * 359.97438 * 19 18 17 21 21 N 1.30876 * 121.76899 * 359.71483 * 17 16 15 22 22 N 1.30787 * 107.16536 * 0.02562 * 16 15 14 23 23 O 1.21290 * 110.09370 * 359.70411 * 22 16 15 24 24 H 0.96998 * 120.00384 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47531 * 59.99831 * 9 7 2 26 26 H 1.09006 * 109.47449 * 300.00332 * 9 7 2 27 27 H 1.09008 * 109.47149 * 59.99835 * 10 9 7 28 28 H 1.08997 * 109.47163 * 299.99905 * 10 9 7 29 29 H 1.00901 * 110.99547 * 296.04492 * 13 11 10 30 30 H 1.00898 * 111.00245 * 59.99865 * 13 11 10 31 31 H 1.08002 * 122.63452 * 359.97438 * 18 17 16 32 32 H 1.07998 * 127.11841 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 0.0001 12 1 0.7886 -5.0068 0.8422 13 7 0.7284 -5.1189 -1.2549 14 6 2.4551 -6.1298 0.1239 15 7 2.6747 -6.8523 1.1940 16 6 3.6220 -7.7495 0.8382 17 6 4.2141 -8.7966 1.7071 18 6 5.1850 -9.6711 1.2393 19 6 5.6235 -10.5655 2.1478 20 16 4.7491 -10.2325 3.5910 21 7 3.8519 -8.9411 2.9564 22 7 3.9193 -7.5207 -0.4147 23 8 3.2547 -6.5991 -0.8390 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.0235 -4.4009 -1.3310 30 1 1.3479 -5.1033 -2.0511 31 1 5.5593 -9.6383 0.2267 32 1 6.3701 -11.3318 2.0002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823264711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:41 Heat of formation + Delta-G solvation = 103.188781 kcal Electronic energy + Delta-G solvation = -18422.528883 eV Core-core repulsion = 15320.027186 eV Total energy + Delta-G solvation = -3102.501697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.54679 -39.32082 -36.90292 -35.50718 -33.18485 -31.91552 -31.65422 -30.08508 -26.76966 -26.56324 -24.31380 -23.31165 -22.23256 -20.59325 -19.53135 -18.46314 -18.04012 -17.66730 -16.64625 -16.03393 -15.85402 -14.70225 -14.62245 -14.48278 -14.01282 -13.77605 -13.52615 -13.36399 -12.69717 -12.23962 -11.91686 -11.81526 -11.77376 -11.17571 -11.04551 -10.96402 -10.94475 -10.67597 -10.43882 -10.06627 -10.00074 -9.63481 -9.30217 -8.95671 -8.56114 -8.45484 -6.11478 -4.14722 0.13375 1.05060 1.06254 1.29005 1.69200 2.73604 2.83584 3.26356 3.29509 3.33440 3.36768 3.94412 4.35597 4.38177 4.67785 4.89690 4.95543 5.22322 5.25081 5.35406 5.43209 5.46249 5.65160 5.93191 6.14450 6.24473 6.39391 6.75786 7.17372 7.43221 7.55614 7.60597 7.85193 8.09461 8.26305 8.90709 9.50535 10.99467 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.003094 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.894321 B = 9047.655598 C = 9389.053884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.143 4.143 11 C 0.180 3.820 12 H 0.126 0.874 13 N -0.840 5.840 14 C 0.222 3.778 15 N -0.459 5.459 16 C 0.223 3.777 17 C 0.195 3.805 18 C -0.174 4.174 19 C -0.207 4.207 20 S 0.293 5.707 21 N -0.415 5.415 22 N -0.365 5.365 23 O 0.091 5.909 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.368 0.632 30 H 0.344 0.656 31 H 0.166 0.834 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.993 -20.204 1.771 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.184 4.184 11 C 0.066 3.934 12 H 0.143 0.857 13 N -0.373 5.373 14 C 0.000 4.000 15 N -0.191 5.191 16 C -0.052 4.052 17 C 0.018 3.982 18 C -0.210 4.210 19 C -0.355 4.355 20 S 0.445 5.555 21 N -0.241 5.241 22 N -0.072 5.072 23 O 0.029 5.971 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.185 0.815 30 H 0.157 0.843 31 H 0.183 0.817 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.329 -21.414 4.118 23.343 hybrid contribution 1.455 2.093 -2.051 3.272 sum 9.783 -19.321 2.067 21.755 Atomic orbital electron populations 1.69940 1.06009 1.26897 1.50262 1.25000 0.94879 0.99332 0.95031 0.86569 0.79871 0.83288 0.78163 1.20591 1.21126 1.19860 1.21140 0.93077 0.90736 1.51370 0.92609 1.19106 0.93606 0.90811 0.97678 1.22556 1.00362 0.93212 1.02235 1.20301 0.90786 0.85915 0.96426 0.85651 1.58977 1.18549 1.56927 1.02868 1.29192 0.92973 0.96359 0.81428 1.72116 1.14978 1.05998 1.26034 1.22712 0.96003 0.97223 0.89261 1.18291 0.95883 0.94502 0.89549 1.21193 0.99410 0.96520 1.03847 1.26531 1.05776 1.04151 0.99016 1.84156 1.29192 1.26300 1.15894 1.76957 1.22176 1.13850 1.11090 1.74867 1.15394 1.04792 1.12147 1.85268 1.38976 1.34320 1.38568 0.92804 0.96128 0.95924 0.91881 0.92079 0.81491 0.84307 0.81685 0.79096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.06 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.58 4.74 -27.89 -0.13 0.45 16 10 C -0.14 -2.67 4.78 -26.73 -0.13 -2.80 16 11 C 0.18 2.87 3.35 -68.86 -0.23 2.64 16 12 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 13 N -0.84 -12.01 9.17 -5.65 -0.05 -12.06 16 14 C 0.22 3.64 7.30 -12.99 -0.09 3.54 16 15 N -0.46 -8.13 11.58 -9.87 -0.11 -8.24 16 16 C 0.22 3.63 7.98 -156.10 -1.24 2.39 16 17 C 0.20 2.75 6.69 -83.89 -0.56 2.19 16 18 C -0.17 -1.81 9.91 -40.59 -0.40 -2.22 16 19 C -0.21 -1.56 11.39 29.52 0.34 -1.23 16 20 S 0.29 2.70 23.70 -107.50 -2.55 0.16 16 21 N -0.42 -5.95 12.08 32.06 0.39 -5.57 16 22 N -0.36 -5.73 12.06 30.98 0.37 -5.36 16 23 O 0.09 1.44 11.27 18.03 0.20 1.64 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.48 6.87 -51.93 -0.36 0.12 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.37 5.32 7.55 -39.29 -0.30 5.02 16 30 H 0.34 4.50 8.97 -39.29 -0.35 4.15 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -30.71 302.82 -7.42 -38.13 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.08 Total: 3.40 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.87 Total: -7.87 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 1.33 Total: -56.01 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.55 Total: 0.16 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.71 -7.42 -38.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823264711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.321 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds