Wall clock time and date at job start Tue Mar 31 2020 01:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48498 * 109.47114 * 269.99946 * 3 2 1 5 5 H 1.48495 * 109.46938 * 30.00533 * 3 2 1 6 6 H 1.48503 * 109.46732 * 150.00251 * 3 2 1 7 7 C 1.37874 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47469 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00072 * 11 10 9 13 13 N 1.46901 * 109.46860 * 65.00222 * 11 10 9 14 14 C 1.50701 * 109.47419 * 184.99997 * 11 10 9 15 15 N 1.30967 * 126.43368 * 104.99823 * 14 11 10 16 16 C 1.35238 * 105.57724 * 180.02562 * 15 14 11 17 17 C 1.48379 * 126.41347 * 179.97438 * 16 15 14 18 18 C 1.38798 * 121.76178 * 179.97438 * 17 16 15 19 19 C 1.34817 * 114.73306 * 180.02562 * 18 17 16 20 20 S 1.71995 * 105.76406 * 359.97438 * 19 18 17 21 21 N 1.30876 * 121.76899 * 359.71483 * 17 16 15 22 22 N 1.30787 * 107.16536 * 0.02562 * 16 15 14 23 23 O 1.21290 * 110.09370 * 359.70411 * 22 16 15 24 24 H 0.96998 * 120.00384 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47531 * 59.99831 * 9 7 2 26 26 H 1.09006 * 109.47449 * 300.00332 * 9 7 2 27 27 H 1.09008 * 109.47149 * 59.99835 * 10 9 7 28 28 H 1.08997 * 109.47163 * 299.99905 * 10 9 7 29 29 H 1.00901 * 110.99547 * 296.04492 * 13 11 10 30 30 H 1.00898 * 111.00245 * 59.99865 * 13 11 10 31 31 H 1.08002 * 122.63452 * 359.97438 * 18 17 16 32 32 H 1.07998 * 127.11841 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 0.0001 12 1 0.7886 -5.0068 0.8422 13 7 0.7284 -5.1189 -1.2549 14 6 2.4551 -6.1298 0.1239 15 7 2.6747 -6.8523 1.1940 16 6 3.6220 -7.7495 0.8382 17 6 4.2141 -8.7966 1.7071 18 6 5.1850 -9.6711 1.2393 19 6 5.6235 -10.5655 2.1478 20 16 4.7491 -10.2325 3.5910 21 7 3.8519 -8.9411 2.9564 22 7 3.9193 -7.5207 -0.4147 23 8 3.2547 -6.5991 -0.8390 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.0235 -4.4009 -1.3310 30 1 1.3479 -5.1033 -2.0511 31 1 5.5593 -9.6383 0.2267 32 1 6.3701 -11.3318 2.0002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823264711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:40 Heat of formation + Delta-G solvation = 79.905651 kcal Electronic energy + Delta-G solvation = -18423.538515 eV Core-core repulsion = 15320.027186 eV Total energy + Delta-G solvation = -3103.511329 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.78796 -40.17706 -38.32621 -36.75876 -35.10217 -33.25099 -32.44494 -31.75535 -28.28305 -27.66630 -25.98783 -24.40872 -23.53090 -22.09410 -20.60145 -19.29959 -19.21851 -18.95513 -18.40069 -17.41945 -16.95088 -16.46173 -15.87607 -15.57620 -15.11072 -15.08318 -14.71564 -14.46836 -14.13508 -13.98591 -13.41984 -13.13542 -12.95355 -12.71483 -12.54222 -12.49367 -12.29914 -11.83000 -11.77768 -11.68191 -11.43043 -11.25562 -10.86748 -10.54186 -9.86569 -9.75195 -8.20380 -6.29952 -0.75767 -0.04833 0.28479 0.52677 0.61954 1.41029 1.42111 1.51974 1.55151 1.66609 2.21656 2.41445 2.75384 3.13985 3.46370 3.67297 3.71832 3.97841 4.11411 4.24944 4.32508 4.43405 4.63648 4.71125 4.76283 4.82542 5.05552 5.28269 5.48061 5.66515 5.81499 5.94903 6.22009 6.42858 6.84894 6.85097 7.39013 8.90449 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.003094 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.894321 B = 9047.655598 C = 9389.053884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.128 4.128 11 C 0.194 3.806 12 H 0.122 0.878 13 N -0.832 5.832 14 C 0.222 3.778 15 N -0.484 5.484 16 C 0.217 3.783 17 C 0.170 3.830 18 C -0.194 4.194 19 C -0.173 4.173 20 S 0.338 5.662 21 N -0.475 5.475 22 N -0.364 5.364 23 O 0.093 5.907 24 H 0.264 0.736 25 H 0.018 0.982 26 H -0.001 1.001 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.368 0.632 30 H 0.354 0.646 31 H 0.176 0.824 32 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -21.620 1.663 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.168 4.168 11 C 0.079 3.921 12 H 0.140 0.860 13 N -0.366 5.366 14 C 0.001 3.999 15 N -0.217 5.217 16 C -0.058 4.058 17 C -0.006 4.006 18 C -0.228 4.228 19 C -0.320 4.320 20 S 0.490 5.510 21 N -0.302 5.302 22 N -0.072 5.072 23 O 0.031 5.969 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.018 0.982 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.186 0.814 30 H 0.168 0.832 31 H 0.193 0.807 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.146 -22.835 3.981 25.302 hybrid contribution 0.947 2.389 -1.931 3.215 sum 11.093 -20.445 2.050 23.351 Atomic orbital electron populations 1.70046 1.07383 1.27778 1.51299 1.25822 0.95719 1.02844 0.94794 0.85567 0.78624 0.79120 0.78472 1.19693 1.20897 1.19356 1.21602 0.93411 0.92404 1.50894 0.92675 1.18968 0.93935 0.91472 0.96339 1.22300 0.99285 0.93088 1.02140 1.19995 0.90291 0.84592 0.97180 0.86039 1.58956 1.18411 1.56681 1.02549 1.29043 0.92989 0.96363 0.81526 1.72104 1.15987 1.06898 1.26734 1.23228 0.95483 0.97394 0.89648 1.18530 0.97312 0.95108 0.89602 1.21274 0.99498 0.97005 1.05019 1.27083 1.04689 1.03248 0.97002 1.83967 1.27819 1.23657 1.15596 1.76705 1.24841 1.16956 1.11701 1.74829 1.15442 1.04841 1.12091 1.85251 1.38892 1.34416 1.38327 0.92706 0.96362 0.98243 0.92879 0.91220 0.81448 0.83244 0.80674 0.74502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.46 13.29 21.45 0.28 -53.17 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -29.39 9.11 25.60 0.23 -29.15 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.42 4.74 29.85 0.14 1.56 16 10 C -0.13 -4.79 4.78 30.59 0.15 -4.64 16 11 C 0.19 6.23 3.35 44.17 0.15 6.37 16 12 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 13 N -0.83 -23.47 9.17 -171.79 -1.58 -25.05 16 14 C 0.22 7.31 7.30 88.36 0.64 7.96 16 15 N -0.48 -17.43 11.58 -302.46 -3.50 -20.93 16 16 C 0.22 7.12 7.98 137.27 1.09 8.21 16 17 C 0.17 4.73 6.69 42.12 0.28 5.01 16 18 C -0.19 -3.65 9.91 21.62 0.21 -3.44 16 19 C -0.17 -1.98 11.39 67.03 0.76 -1.22 16 20 S 0.34 5.49 23.70 -56.49 -1.34 4.15 16 21 N -0.48 -13.47 12.08 -52.48 -0.63 -14.10 16 22 N -0.36 -11.35 12.06 -59.08 -0.71 -12.07 16 23 O 0.09 2.89 11.27 74.57 0.84 3.73 16 24 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.02 0.86 6.87 -2.39 -0.02 0.84 16 26 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 27 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.37 10.58 7.55 -89.69 -0.68 9.90 16 30 H 0.35 8.94 8.97 -89.70 -0.80 8.14 16 31 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.24 0.39 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -66.98 302.82 -0.78 -67.75 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -0.29 Total: 13.12 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.13 Total: -8.50 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -6.14 Total: -125.32 kcal Atomic # 8 Polarization: 2.89 SS G_CDS: 0.84 Total: 3.73 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -1.34 Total: 4.15 kcal Total: -66.98 -0.78 -67.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823264711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.659 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds