Wall clock time and date at job start Tue Mar 31 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47311 * 291.87716 * 3 2 1 5 5 C 1.36872 * 120.00211 * 88.09599 * 4 3 2 6 6 H 1.07995 * 120.00201 * 169.95251 * 5 4 3 7 7 C 1.39047 * 119.99957 * 349.95991 * 5 4 3 8 8 N 1.31365 * 120.00219 * 337.93487 * 7 5 4 9 9 Si 1.86799 * 120.00044 * 157.92795 * 7 5 4 10 10 H 1.48498 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47091 * 119.99917 * 9 7 5 12 12 H 1.48501 * 109.47409 * 240.00199 * 9 7 5 13 13 C 1.34780 * 119.99590 * 268.09945 * 4 3 2 14 14 O 1.21598 * 119.99431 * 183.97120 * 13 4 3 15 15 C 1.47710 * 120.00475 * 3.97099 * 13 4 3 16 16 C 1.40093 * 120.56561 * 230.01088 * 15 13 4 17 17 C 1.38336 * 118.27875 * 179.74686 * 16 15 13 18 18 C 1.38367 * 119.31900 * 0.25060 * 17 16 15 19 19 C 1.50700 * 119.45795 * 180.02562 * 18 17 16 20 20 F 1.39894 * 109.46984 * 210.00206 * 19 18 17 21 21 F 1.39897 * 109.46665 * 329.99876 * 19 18 17 22 22 N 1.31939 * 121.08523 * 0.02562 * 18 17 16 23 23 C 1.31675 * 121.89114 * 359.97438 * 22 18 17 24 24 H 4.40642 * 5.51331 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47221 * 171.87664 * 3 2 1 26 26 H 1.08997 * 109.47056 * 51.87718 * 3 2 1 27 27 H 0.96992 * 120.00210 * 180.02562 * 8 7 5 28 28 H 1.07994 * 120.85827 * 0.02562 * 16 15 13 29 29 H 1.08009 * 120.34010 * 180.22680 * 17 16 15 30 30 H 1.08999 * 109.47069 * 89.99830 * 19 18 17 31 31 H 1.08006 * 119.72096 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5138 1.2817 5 6 3.3262 -1.8584 1.4513 6 1 3.8358 -2.2246 2.3302 7 6 2.8650 -2.7528 0.4918 8 7 1.9008 -2.3983 -0.3271 9 14 3.6164 -4.4584 0.3670 10 1 4.6765 -4.6088 1.3959 11 1 2.5627 -5.4810 0.5895 12 1 4.2068 -4.6417 -0.9832 13 6 3.3954 0.3371 2.2940 14 8 3.8689 -0.0812 3.3329 15 6 3.1059 1.7775 2.1414 16 6 4.0784 2.7365 2.4529 17 6 3.7584 4.0721 2.2874 18 6 2.4988 4.4153 1.8290 19 6 2.1471 5.8693 1.6470 20 9 0.7752 6.0468 1.8554 21 9 2.8625 6.6410 2.5689 22 7 1.6006 3.4904 1.5486 23 6 1.8567 2.2065 1.6895 24 1 -1.0499 0.0001 0.0002 25 1 3.0089 1.0182 -0.1452 26 1 3.0096 -0.6336 -0.8084 27 1 1.5788 -3.0224 -0.9961 28 1 5.0542 2.4405 2.8088 29 1 4.4843 4.8392 2.5141 30 1 2.4043 6.1814 0.6348 31 1 1.0954 1.4791 1.4492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847018929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:02 Heat of formation + Delta-G solvation = -18.810991 kcal Electronic energy + Delta-G solvation = -21235.974820 eV Core-core repulsion = 17542.049679 eV Total energy + Delta-G solvation = -3693.925142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.02809 -47.03015 -40.29706 -38.35178 -35.44703 -32.76048 -32.34810 -31.54716 -31.44954 -27.33808 -26.52584 -24.80578 -23.49573 -22.51946 -19.80391 -18.11970 -17.79416 -17.54386 -17.47742 -16.83230 -16.51550 -15.89801 -15.09100 -14.76296 -14.36747 -14.06103 -13.88974 -13.68214 -13.57526 -13.34597 -13.02481 -12.77270 -12.62723 -12.41968 -12.01981 -11.76722 -11.27593 -11.12754 -10.63151 -10.45914 -9.78466 -9.63092 -9.48667 -9.47279 -8.99116 -8.96591 -8.55632 -8.15542 -6.54027 -4.01454 0.84473 1.35956 3.00581 3.15746 3.22276 3.37491 3.43730 3.65833 3.90794 3.93878 3.99848 4.06805 4.38112 4.63460 4.79206 4.86300 4.97518 5.15120 5.25333 5.31805 5.36616 5.59227 5.79367 6.03540 6.13408 6.33930 6.61259 6.68541 6.92708 7.35970 7.77527 7.91832 8.19804 8.68797 8.89887 9.10617 9.64733 10.42385 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.004799 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.888768 B = 5832.715267 C = 6474.508175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.111 4.111 3 C 0.228 3.772 4 N -0.420 5.420 5 C -0.314 4.314 6 H 0.113 0.887 7 C 0.033 3.967 8 N -0.850 5.850 9 Si 0.926 3.074 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.472 3.528 14 O -0.577 6.577 15 C -0.124 4.124 16 C -0.043 4.043 17 C -0.146 4.146 18 C 0.036 3.964 19 C 0.330 3.670 20 F -0.188 7.188 21 F -0.198 7.198 22 N -0.455 5.455 23 C 0.117 3.883 24 H 0.202 0.798 25 H 0.061 0.939 26 H 0.114 0.886 27 H 0.273 0.727 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 11.597 -2.603 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.112 4.112 3 C 0.105 3.895 4 N -0.135 5.135 5 C -0.441 4.441 6 H 0.130 0.870 7 C -0.172 4.172 8 N -0.487 5.487 9 Si 0.752 3.248 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.260 3.740 14 O -0.462 6.462 15 C -0.130 4.130 16 C -0.070 4.070 17 C -0.166 4.166 18 C -0.103 4.103 19 C 0.276 3.724 20 F -0.169 7.169 21 F -0.179 7.179 22 N -0.163 5.163 23 C -0.041 4.041 24 H 0.219 0.781 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.163 0.837 29 H 0.161 0.839 30 H 0.144 0.856 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.818 11.538 -2.546 11.844 hybrid contribution 0.644 -1.151 0.155 1.328 sum 1.462 10.387 -2.391 10.758 Atomic orbital electron populations 1.24310 0.95384 1.05951 1.01249 1.22819 0.94091 0.95403 0.98936 1.18452 0.84779 0.97304 0.88942 1.43726 1.53809 1.06790 1.09215 1.19828 1.35965 0.79671 1.08586 0.86983 1.25369 0.94892 1.00500 0.96473 1.70069 1.21579 1.36996 1.20042 0.85871 0.79385 0.81074 0.78502 1.18956 1.20638 1.20357 1.17580 0.87285 0.84318 0.84812 1.90652 1.49939 1.77605 1.28023 1.21521 0.95769 0.96796 0.98897 1.21666 0.99598 0.91318 0.94389 1.21696 0.97082 0.97342 1.00493 1.21647 0.92198 0.95147 1.01267 1.20039 0.73767 0.86087 0.92517 1.93022 1.31860 1.95879 1.96175 1.92996 1.78113 1.76514 1.70289 1.67297 1.33057 1.01634 1.14317 1.23711 0.95933 0.91629 0.92876 0.78094 0.92129 0.86851 0.91636 0.83667 0.83908 0.85590 0.80472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.93 18.41 29.55 0.54 -4.38 16 2 C -0.11 -2.35 8.46 -37.12 -0.31 -2.67 16 3 C 0.23 4.85 4.76 -6.83 -0.03 4.82 16 4 N -0.42 -10.14 2.58 -119.06 -0.31 -10.44 16 5 C -0.31 -8.16 9.43 -15.00 -0.14 -8.30 16 6 H 0.11 3.09 7.28 -52.49 -0.38 2.70 16 7 C 0.03 0.81 4.96 -17.45 -0.09 0.73 16 8 N -0.85 -20.72 8.90 55.50 0.49 -20.23 16 9 Si 0.93 19.27 29.61 -169.99 -5.03 14.24 16 10 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.47 11.22 7.17 -12.39 -0.09 11.13 16 14 O -0.58 -15.62 16.65 5.28 0.09 -15.53 16 15 C -0.12 -2.43 4.66 -104.82 -0.49 -2.92 16 16 C -0.04 -0.70 9.90 -38.85 -0.38 -1.08 16 17 C -0.15 -1.99 9.42 -39.50 -0.37 -2.37 16 18 C 0.04 0.53 6.58 -82.50 -0.54 -0.01 16 19 C 0.33 3.88 5.72 36.01 0.21 4.08 16 20 F -0.19 -2.66 17.05 2.25 0.04 -2.62 16 21 F -0.20 -2.33 16.45 2.25 0.04 -2.29 16 22 N -0.45 -7.91 9.94 -9.11 -0.09 -8.00 16 23 C 0.12 2.21 8.97 -17.11 -0.15 2.05 16 24 H 0.20 3.25 7.80 -54.10 -0.42 2.83 16 25 H 0.06 1.14 6.39 -51.93 -0.33 0.80 16 26 H 0.11 2.51 6.46 -51.93 -0.34 2.17 16 27 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 28 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.14 1.48 7.59 -52.48 -0.40 1.09 16 30 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.18 3.53 4.34 -52.48 -0.23 3.31 16 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -29.81 285.28 -4.41 -34.22 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.08 Total: 5.26 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.85 Total: 1.09 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.10 Total: -38.67 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.09 Total: -15.53 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.08 Total: -4.91 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.81 -4.41 -34.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847018929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.405 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds