Wall clock time and date at job start Tue Mar 31 2020 02:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47311 * 291.87716 * 3 2 1 5 5 C 1.36872 * 120.00211 * 88.09599 * 4 3 2 6 6 H 1.07995 * 120.00201 * 169.95251 * 5 4 3 7 7 C 1.39047 * 119.99957 * 349.95991 * 5 4 3 8 8 N 1.31365 * 120.00219 * 337.93487 * 7 5 4 9 9 Si 1.86799 * 120.00044 * 157.92795 * 7 5 4 10 10 H 1.48498 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47091 * 119.99917 * 9 7 5 12 12 H 1.48501 * 109.47409 * 240.00199 * 9 7 5 13 13 C 1.34780 * 119.99590 * 268.09945 * 4 3 2 14 14 O 1.21598 * 119.99431 * 183.97120 * 13 4 3 15 15 C 1.47710 * 120.00475 * 3.97099 * 13 4 3 16 16 C 1.40093 * 120.56561 * 230.01088 * 15 13 4 17 17 C 1.38336 * 118.27875 * 179.74686 * 16 15 13 18 18 C 1.38367 * 119.31900 * 0.25060 * 17 16 15 19 19 C 1.50700 * 119.45795 * 180.02562 * 18 17 16 20 20 F 1.39894 * 109.46984 * 210.00206 * 19 18 17 21 21 F 1.39897 * 109.46665 * 329.99876 * 19 18 17 22 22 N 1.31939 * 121.08523 * 0.02562 * 18 17 16 23 23 C 1.31675 * 121.89114 * 359.97438 * 22 18 17 24 24 H 4.40642 * 5.51331 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47221 * 171.87664 * 3 2 1 26 26 H 1.08997 * 109.47056 * 51.87718 * 3 2 1 27 27 H 0.96992 * 120.00210 * 180.02562 * 8 7 5 28 28 H 1.07994 * 120.85827 * 0.02562 * 16 15 13 29 29 H 1.08009 * 120.34010 * 180.22680 * 17 16 15 30 30 H 1.08999 * 109.47069 * 89.99830 * 19 18 17 31 31 H 1.08006 * 119.72096 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5138 1.2817 5 6 3.3262 -1.8584 1.4513 6 1 3.8358 -2.2246 2.3302 7 6 2.8650 -2.7528 0.4918 8 7 1.9008 -2.3983 -0.3271 9 14 3.6164 -4.4584 0.3670 10 1 4.6765 -4.6088 1.3959 11 1 2.5627 -5.4810 0.5895 12 1 4.2068 -4.6417 -0.9832 13 6 3.3954 0.3371 2.2940 14 8 3.8689 -0.0812 3.3329 15 6 3.1059 1.7775 2.1414 16 6 4.0784 2.7365 2.4529 17 6 3.7584 4.0721 2.2874 18 6 2.4988 4.4153 1.8290 19 6 2.1471 5.8693 1.6470 20 9 0.7752 6.0468 1.8554 21 9 2.8625 6.6410 2.5689 22 7 1.6006 3.4904 1.5486 23 6 1.8567 2.2065 1.6895 24 1 -1.0499 0.0001 0.0002 25 1 3.0089 1.0182 -0.1452 26 1 3.0096 -0.6336 -0.8084 27 1 1.5788 -3.0224 -0.9961 28 1 5.0542 2.4405 2.8088 29 1 4.4843 4.8392 2.5141 30 1 2.4043 6.1814 0.6348 31 1 1.0954 1.4791 1.4492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847018929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:01 Heat of formation + Delta-G solvation = -36.884332 kcal Electronic energy + Delta-G solvation = -21236.758539 eV Core-core repulsion = 17542.049679 eV Total energy + Delta-G solvation = -3694.708860 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.97881 -47.99738 -41.73719 -40.02114 -37.29340 -34.40852 -33.71784 -33.20674 -32.93310 -28.77010 -28.09861 -26.48679 -24.82822 -23.82504 -21.43686 -19.85861 -18.94758 -18.81202 -18.46685 -18.27228 -18.15049 -17.21319 -16.84249 -16.06881 -16.00370 -15.73740 -15.22345 -14.93620 -14.81369 -14.42837 -14.39428 -14.19909 -14.14490 -13.93021 -13.55405 -13.43037 -12.80746 -12.53931 -12.31435 -12.15505 -11.30943 -11.20784 -11.03547 -11.01698 -10.69070 -10.40319 -10.16962 -10.01454 -8.40136 -5.98106 -0.47387 0.07018 1.32228 1.43230 1.56026 1.76019 2.00615 2.28469 2.29570 2.35473 2.55390 2.92411 3.02656 3.17565 3.26160 3.68601 3.77424 3.83900 3.90184 3.98076 4.14589 4.20631 4.48063 4.54324 4.80327 4.88574 5.02937 5.35877 5.39426 5.40601 5.89879 6.31200 6.60339 7.00287 7.09051 7.24877 7.79879 8.54378 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.004799 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.888768 B = 5832.715267 C = 6474.508175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.145 4.145 3 C 0.236 3.764 4 N -0.428 5.428 5 C -0.355 4.355 6 H 0.083 0.917 7 C 0.009 3.991 8 N -0.858 5.858 9 Si 0.988 3.012 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.263 1.263 13 C 0.466 3.534 14 O -0.624 6.624 15 C -0.150 4.150 16 C -0.040 4.040 17 C -0.127 4.127 18 C 0.039 3.961 19 C 0.333 3.667 20 F -0.203 7.203 21 F -0.195 7.195 22 N -0.467 5.467 23 C 0.114 3.886 24 H 0.233 0.767 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.278 0.722 28 H 0.156 0.844 29 H 0.186 0.814 30 H 0.177 0.823 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 13.513 -3.597 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.147 4.147 3 C 0.113 3.887 4 N -0.143 5.143 5 C -0.482 4.482 6 H 0.101 0.899 7 C -0.196 4.196 8 N -0.494 5.494 9 Si 0.812 3.188 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.188 1.188 13 C 0.256 3.744 14 O -0.513 6.513 15 C -0.155 4.155 16 C -0.066 4.066 17 C -0.146 4.146 18 C -0.100 4.100 19 C 0.279 3.721 20 F -0.184 7.184 21 F -0.176 7.176 22 N -0.176 5.176 23 C -0.044 4.044 24 H 0.250 0.750 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.174 0.826 29 H 0.204 0.796 30 H 0.194 0.806 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.836 13.473 -3.576 13.965 hybrid contribution 0.593 -1.603 0.488 1.777 sum 1.429 11.871 -3.088 12.349 Atomic orbital electron populations 1.25110 0.96271 1.04482 0.99680 1.22992 0.94560 0.96765 1.00365 1.18390 0.85245 0.97883 0.87140 1.43866 1.53779 1.06410 1.10273 1.19692 1.38176 0.81274 1.09056 0.89906 1.26024 0.94642 1.03353 0.95584 1.70150 1.21348 1.38024 1.19831 0.84966 0.78295 0.76914 0.78668 1.19887 1.20298 1.18792 1.18225 0.86044 0.86146 0.83988 1.90592 1.51876 1.79086 1.29726 1.21182 0.97393 0.94647 1.02275 1.21886 0.99374 0.91909 0.93449 1.22068 0.97435 0.96870 0.98238 1.22362 0.92082 0.96440 0.99115 1.20441 0.72945 0.84034 0.94667 1.93000 1.33247 1.95778 1.96383 1.93008 1.77897 1.76086 1.70611 1.67330 1.34050 1.01169 1.15059 1.23378 0.95269 0.92256 0.93533 0.74999 0.90050 0.88229 0.91162 0.82603 0.79638 0.80627 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.19 18.41 74.32 1.37 -7.82 16 2 C -0.15 -6.22 8.46 31.12 0.26 -5.96 16 3 C 0.24 10.27 4.76 84.57 0.40 10.68 16 4 N -0.43 -21.58 2.58 -648.86 -1.67 -23.26 16 5 C -0.36 -19.37 9.43 84.10 0.79 -18.57 16 6 H 0.08 4.89 7.28 -2.91 -0.02 4.87 16 7 C 0.01 0.46 4.96 84.96 0.42 0.88 16 8 N -0.86 -42.09 8.90 21.68 0.19 -41.89 16 9 Si 0.99 40.06 29.61 68.60 2.03 42.10 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 13 C 0.47 23.15 7.17 86.75 0.62 23.77 16 14 O -0.62 -35.62 16.65 -4.02 -0.07 -35.68 16 15 C -0.15 -5.90 4.66 -20.00 -0.09 -5.99 16 16 C -0.04 -1.22 9.90 22.74 0.23 -1.00 16 17 C -0.13 -3.01 9.42 22.32 0.21 -2.80 16 18 C 0.04 1.03 6.58 42.57 0.28 1.31 16 19 C 0.33 6.41 5.72 71.24 0.41 6.82 16 20 F -0.20 -5.12 17.05 44.97 0.77 -4.35 16 21 F -0.19 -3.72 16.45 44.97 0.74 -2.98 16 22 N -0.47 -15.47 9.94 -182.75 -1.82 -17.29 16 23 C 0.11 4.27 8.97 85.04 0.76 5.03 16 24 H 0.23 7.06 7.80 -4.42 -0.03 7.03 16 25 H 0.08 3.11 6.39 -2.38 -0.02 3.09 16 26 H 0.10 4.54 6.46 -2.39 -0.02 4.52 16 27 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 28 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.19 2.85 7.59 -2.91 -0.02 2.83 16 30 H 0.18 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.16 6.55 4.34 -2.91 -0.01 6.54 16 Total: -1.00 -67.37 285.28 7.02 -60.35 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.19 Total: 16.68 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.66 Total: 6.34 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.30 Total: -82.44 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.07 Total: -35.68 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 1.51 Total: -7.33 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.10 kcal Total: -67.37 7.02 -60.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847018929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.463 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds