Wall clock time and date at job start Tue Mar 31 2020 01:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48494 * 109.47181 * 274.95075 * 3 2 1 5 5 H 1.48495 * 109.47375 * 34.95418 * 3 2 1 6 6 H 1.48506 * 109.47251 * 154.95016 * 3 2 1 7 7 C 1.38953 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00161 * 345.05679 * 7 2 1 9 9 N 1.37096 * 120.00238 * 165.05993 * 7 2 1 10 10 C 1.34780 * 119.99835 * 319.06831 * 9 7 2 11 11 O 1.21297 * 119.99848 * 0.27590 * 10 9 7 12 12 C 1.50700 * 120.00139 * 180.27317 * 10 9 7 13 13 C 1.50700 * 109.47022 * 179.97438 * 12 10 9 14 14 C 1.38609 * 120.42284 * 99.72532 * 13 12 10 15 15 C 1.38669 * 118.43481 * 179.78234 * 14 13 12 16 16 C 1.38192 * 119.19280 * 0.46786 * 15 14 13 17 17 N 1.31877 * 120.77925 * 359.77262 * 16 15 14 18 18 C 1.31976 * 121.70875 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.63806 * 179.97438 * 18 17 16 20 20 C 1.46493 * 120.00386 * 139.33942 * 9 7 2 21 21 C 1.53004 * 117.49562 * 1.55435 * 20 9 7 22 22 C 1.53003 * 117.50356 * 292.93148 * 20 9 7 23 23 H 0.97005 * 120.00433 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47243 * 300.00035 * 12 10 9 25 25 H 1.09003 * 109.46813 * 59.99887 * 12 10 9 26 26 H 1.08000 * 120.78263 * 0.02562 * 14 13 12 27 27 H 1.07997 * 120.40539 * 180.24862 * 15 14 13 28 28 H 1.08002 * 119.61060 * 179.79610 * 16 15 14 29 29 H 1.09002 * 115.55284 * 147.25422 * 20 9 7 30 30 H 1.08992 * 117.49989 * 0.02562 * 21 20 9 31 31 H 1.09002 * 117.49552 * 145.02005 * 21 20 9 32 32 H 1.08991 * 117.50313 * 214.97699 * 22 20 9 33 33 H 1.09003 * 117.49561 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3908 2.1069 -1.3948 5 1 1.5018 2.6202 0.8021 6 1 3.5940 1.4123 0.5928 7 6 2.0088 -1.2033 0.0005 8 1 1.4963 -2.1227 0.2421 9 7 3.3451 -1.2235 -0.3055 10 6 3.8182 -0.4581 -1.3089 11 8 3.0626 0.2525 -1.9378 12 6 5.2860 -0.4849 -1.6494 13 6 5.5520 0.4521 -2.7993 14 6 6.0644 1.7191 -2.5682 15 6 6.2978 2.5457 -3.6569 16 6 6.0048 2.0864 -4.9269 17 7 5.5133 0.8765 -5.1103 18 6 5.2831 0.0606 -4.0988 19 17 4.6343 -1.5208 -4.4019 20 6 4.2577 -2.0816 0.4540 21 6 3.6530 -2.9585 1.5524 22 6 4.4927 -1.7352 1.9257 23 1 -0.4851 0.8401 -0.0004 24 1 5.8660 -0.1700 -0.7820 25 1 5.5750 -1.4972 -1.9317 26 1 6.2806 2.0532 -1.5642 27 1 6.7002 3.5376 -3.5137 28 1 6.1808 2.7258 -5.7794 29 1 5.0989 -2.4872 -0.1081 30 1 2.5761 -2.8973 1.7095 31 1 4.0964 -3.9412 1.7129 32 1 5.4883 -1.9131 2.3318 33 1 3.9686 -0.8686 2.3286 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864999411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:58 Heat of formation + Delta-G solvation = 40.570453 kcal Electronic energy + Delta-G solvation = -19957.007208 eV Core-core repulsion = 16817.453719 eV Total energy + Delta-G solvation = -3139.553489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29453 -39.02182 -36.52661 -36.31842 -33.60077 -32.82399 -31.69613 -31.35823 -28.07926 -24.79743 -23.51175 -22.53532 -21.89412 -21.33266 -19.27380 -17.33514 -17.13754 -16.65947 -16.26833 -15.54735 -15.04015 -14.49946 -14.10922 -13.95563 -13.80685 -13.22709 -13.14981 -12.97061 -12.51934 -12.11124 -11.68280 -11.60105 -11.43242 -11.15741 -10.86402 -10.76773 -10.35368 -10.06505 -10.00270 -9.76209 -9.59953 -9.50581 -8.79400 -8.56990 -8.43349 -7.53339 -6.17537 -3.98368 1.04678 1.26769 2.10565 3.22727 3.42366 3.66846 3.70526 3.81776 4.29584 4.44921 4.54508 4.62851 4.80118 4.94404 4.99707 5.14908 5.25372 5.39184 5.43935 5.48023 5.57968 5.65515 5.73566 5.84591 6.04808 6.11790 6.23349 6.25994 6.55292 6.63168 6.81788 7.81709 7.82202 7.92509 8.72894 8.85790 9.40181 9.74682 10.85449 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.007644 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.316664 B = 3662.345390 C = 4077.133400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.085 3.915 3 Si 0.931 3.069 4 H -0.255 1.255 5 H -0.319 1.319 6 H -0.288 1.288 7 C -0.344 4.344 8 H 0.098 0.902 9 N -0.433 5.433 10 C 0.454 3.546 11 O -0.531 6.531 12 C -0.101 4.101 13 C -0.084 4.084 14 C -0.060 4.060 15 C -0.172 4.172 16 C 0.107 3.893 17 N -0.481 5.481 18 C 0.194 3.806 19 Cl -0.024 7.024 20 C 0.061 3.939 21 C -0.171 4.171 22 C -0.199 4.199 23 H 0.272 0.728 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.162 0.838 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.442 0.645 -2.454 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.124 4.124 3 Si 0.766 3.234 4 H -0.181 1.181 5 H -0.251 1.251 6 H -0.214 1.214 7 C -0.470 4.470 8 H 0.115 0.885 9 N -0.153 5.153 10 C 0.244 3.756 11 O -0.415 6.415 12 C -0.142 4.142 13 C -0.087 4.087 14 C -0.086 4.086 15 C -0.192 4.192 16 C -0.050 4.050 17 N -0.191 5.191 18 C 0.029 3.971 19 Cl 0.004 6.996 20 C -0.045 4.045 21 C -0.208 4.208 22 C -0.238 4.238 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.179 0.821 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.609 0.628 -3.659 15.073 hybrid contribution 0.446 0.936 0.956 1.410 sum 15.055 1.564 -2.703 15.375 Atomic orbital electron populations 1.69705 1.06810 1.28199 1.45709 1.25368 0.95073 0.99712 0.92212 0.85953 0.78200 0.81673 0.77616 1.18125 1.25075 1.21393 1.18795 0.81206 0.95609 1.51376 0.88483 1.43094 1.07200 1.38186 1.26777 1.19895 0.88691 0.85186 0.81827 1.90501 1.57994 1.41278 1.51702 1.20711 0.97599 0.99656 0.96218 1.20125 0.98793 0.96112 0.93708 1.21475 0.95205 0.91876 1.00026 1.22125 1.02317 1.01175 0.93566 1.22570 0.94603 0.91001 0.96862 1.66990 1.12744 1.04582 1.34824 1.21422 0.96616 0.89730 0.89283 1.98403 1.83845 1.20826 1.96493 1.21834 0.96135 0.98874 0.87654 1.23121 1.01560 0.93845 1.02281 1.23279 1.00466 1.00498 0.99515 0.91821 0.88664 0.88215 0.84187 0.84244 0.82129 0.87114 0.87026 0.89379 0.89452 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.67 13.96 55.50 0.77 -25.90 16 2 C 0.08 2.50 4.99 -17.47 -0.09 2.41 16 3 Si 0.93 24.98 24.33 -169.99 -4.14 20.84 16 4 H -0.25 -7.23 6.18 56.52 0.35 -6.88 16 5 H -0.32 -8.52 7.11 56.52 0.40 -8.11 16 6 H -0.29 -7.26 7.01 56.52 0.40 -6.87 16 7 C -0.34 -9.51 8.74 -14.93 -0.13 -9.64 16 8 H 0.10 2.81 7.03 -52.49 -0.37 2.44 16 9 N -0.43 -10.12 2.56 -107.73 -0.28 -10.39 16 10 C 0.45 10.47 5.56 -10.98 -0.06 10.41 16 11 O -0.53 -14.46 10.71 5.54 0.06 -14.40 16 12 C -0.10 -1.75 3.95 -29.03 -0.11 -1.87 16 13 C -0.08 -1.46 4.44 -104.44 -0.46 -1.92 16 14 C -0.06 -0.88 9.82 -39.29 -0.39 -1.27 16 15 C -0.17 -2.16 10.11 -39.44 -0.40 -2.56 16 16 C 0.11 1.45 11.18 -17.55 -0.20 1.25 16 17 N -0.48 -8.24 10.34 -10.36 -0.11 -8.35 16 18 C 0.19 3.52 7.16 -17.45 -0.12 3.40 16 19 Cl -0.02 -0.44 27.50 -51.86 -1.43 -1.86 16 20 C 0.06 1.09 5.84 -67.93 -0.40 0.70 16 21 C -0.17 -2.83 9.79 -26.73 -0.26 -3.09 16 22 C -0.20 -3.23 10.38 -26.73 -0.28 -3.50 16 23 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 24 H 0.10 1.40 8.00 -51.93 -0.42 0.99 16 25 H 0.10 1.52 6.79 -51.93 -0.35 1.17 16 26 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.63 7.01 -51.93 -0.36 1.27 16 30 H 0.11 2.15 6.52 -51.93 -0.34 1.81 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 293.92 15.07 4.43 4.43 Total: -1.00 -34.70 293.92 -7.15 -41.85 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.57 Total: -0.53 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.90 Total: -5.69 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.39 Total: -44.64 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.06 Total: -14.40 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.14 Total: 20.84 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.43 Total: -1.86 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.70 -7.15 -41.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864999411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.418 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds