Wall clock time and date at job start Tue Mar 31 2020 01:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48494 * 109.47181 * 274.95075 * 3 2 1 5 5 H 1.48495 * 109.47375 * 34.95418 * 3 2 1 6 6 H 1.48506 * 109.47251 * 154.95016 * 3 2 1 7 7 C 1.38953 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00161 * 345.05679 * 7 2 1 9 9 N 1.37096 * 120.00238 * 165.05993 * 7 2 1 10 10 C 1.34780 * 119.99835 * 319.06831 * 9 7 2 11 11 O 1.21297 * 119.99848 * 0.27590 * 10 9 7 12 12 C 1.50700 * 120.00139 * 180.27317 * 10 9 7 13 13 C 1.50700 * 109.47022 * 179.97438 * 12 10 9 14 14 C 1.38609 * 120.42284 * 99.72532 * 13 12 10 15 15 C 1.38669 * 118.43481 * 179.78234 * 14 13 12 16 16 C 1.38192 * 119.19280 * 0.46786 * 15 14 13 17 17 N 1.31877 * 120.77925 * 359.77262 * 16 15 14 18 18 C 1.31976 * 121.70875 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.63806 * 179.97438 * 18 17 16 20 20 C 1.46493 * 120.00386 * 139.33942 * 9 7 2 21 21 C 1.53004 * 117.49562 * 1.55435 * 20 9 7 22 22 C 1.53003 * 117.50356 * 292.93148 * 20 9 7 23 23 H 0.97005 * 120.00433 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47243 * 300.00035 * 12 10 9 25 25 H 1.09003 * 109.46813 * 59.99887 * 12 10 9 26 26 H 1.08000 * 120.78263 * 0.02562 * 14 13 12 27 27 H 1.07997 * 120.40539 * 180.24862 * 15 14 13 28 28 H 1.08002 * 119.61060 * 179.79610 * 16 15 14 29 29 H 1.09002 * 115.55284 * 147.25422 * 20 9 7 30 30 H 1.08992 * 117.49989 * 0.02562 * 21 20 9 31 31 H 1.09002 * 117.49552 * 145.02005 * 21 20 9 32 32 H 1.08991 * 117.50313 * 214.97699 * 22 20 9 33 33 H 1.09003 * 117.49561 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3908 2.1069 -1.3948 5 1 1.5018 2.6202 0.8021 6 1 3.5940 1.4123 0.5928 7 6 2.0088 -1.2033 0.0005 8 1 1.4963 -2.1227 0.2421 9 7 3.3451 -1.2235 -0.3055 10 6 3.8182 -0.4581 -1.3089 11 8 3.0626 0.2525 -1.9378 12 6 5.2860 -0.4849 -1.6494 13 6 5.5520 0.4521 -2.7993 14 6 6.0644 1.7191 -2.5682 15 6 6.2978 2.5457 -3.6569 16 6 6.0048 2.0864 -4.9269 17 7 5.5133 0.8765 -5.1103 18 6 5.2831 0.0606 -4.0988 19 17 4.6343 -1.5208 -4.4019 20 6 4.2577 -2.0816 0.4540 21 6 3.6530 -2.9585 1.5524 22 6 4.4927 -1.7352 1.9257 23 1 -0.4851 0.8401 -0.0004 24 1 5.8660 -0.1700 -0.7820 25 1 5.5750 -1.4972 -1.9317 26 1 6.2806 2.0532 -1.5642 27 1 6.7002 3.5376 -3.5137 28 1 6.1808 2.7258 -5.7794 29 1 5.0989 -2.4872 -0.1081 30 1 2.5761 -2.8973 1.7095 31 1 4.0964 -3.9412 1.7129 32 1 5.4883 -1.9131 2.3318 33 1 3.9686 -0.8686 2.3286 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864999411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:58 Heat of formation + Delta-G solvation = 16.713881 kcal Electronic energy + Delta-G solvation = -19958.041706 eV Core-core repulsion = 16817.453719 eV Total energy + Delta-G solvation = -3140.587987 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57660 -40.61313 -38.07801 -37.61173 -35.14346 -34.51613 -33.40698 -32.68722 -29.50566 -26.63402 -24.64572 -23.91539 -23.18140 -22.81161 -21.05229 -19.04951 -18.35715 -17.93141 -17.85694 -17.25693 -16.45555 -15.85617 -15.82110 -15.44547 -15.10354 -14.83132 -14.64856 -14.52427 -14.10440 -13.55222 -13.47170 -12.88641 -12.80844 -12.69304 -12.36367 -12.17432 -12.13973 -11.99523 -11.58620 -11.19355 -10.92976 -10.74217 -10.64667 -10.40414 -9.83298 -9.40125 -8.38855 -6.17109 -0.08480 0.16091 0.86918 1.20051 1.29429 1.51806 1.93502 2.45624 2.50358 2.79690 2.96985 3.24523 3.39096 3.71503 3.81898 3.93813 3.98744 4.10488 4.16532 4.23682 4.34305 4.43200 4.52630 4.65795 4.91124 4.99089 5.01821 5.12474 5.26091 5.47916 5.55040 5.69770 5.84857 6.70248 6.74790 6.88787 7.34429 7.85188 8.67403 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.007644 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.316664 B = 3662.345390 C = 4077.133400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.281 1.281 5 H -0.325 1.325 6 H -0.261 1.261 7 C -0.330 4.330 8 H 0.069 0.931 9 N -0.451 5.451 10 C 0.452 3.548 11 O -0.577 6.577 12 C -0.089 4.089 13 C -0.109 4.109 14 C -0.068 4.068 15 C -0.158 4.158 16 C 0.103 3.897 17 N -0.510 5.510 18 C 0.167 3.833 19 Cl -0.044 7.044 20 C 0.040 3.960 21 C -0.172 4.172 22 C -0.179 4.179 23 H 0.270 0.730 24 H 0.131 0.869 25 H 0.120 0.880 26 H 0.165 0.835 27 H 0.185 0.815 28 H 0.199 0.801 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.466 1.518 -1.910 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.172 4.172 3 Si 0.821 3.179 4 H -0.209 1.209 5 H -0.257 1.257 6 H -0.186 1.186 7 C -0.457 4.457 8 H 0.087 0.913 9 N -0.171 5.171 10 C 0.244 3.756 11 O -0.463 6.463 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.094 4.094 15 C -0.177 4.177 16 C -0.054 4.054 17 N -0.221 5.221 18 C 0.004 3.996 19 Cl -0.015 7.015 20 C -0.064 4.064 21 C -0.209 4.209 22 C -0.218 4.218 23 H 0.079 0.921 24 H 0.148 0.852 25 H 0.138 0.862 26 H 0.183 0.817 27 H 0.202 0.798 28 H 0.215 0.785 29 H 0.171 0.829 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.678 1.462 -3.081 18.987 hybrid contribution -0.729 0.635 0.695 1.190 sum 17.949 2.097 -2.386 18.228 Atomic orbital electron populations 1.69810 1.08177 1.28470 1.49313 1.26073 0.95596 1.02596 0.92933 0.85030 0.78393 0.78621 0.75897 1.20926 1.25670 1.18550 1.18658 0.83679 0.94100 1.49310 0.91328 1.43299 1.06421 1.39283 1.28096 1.20909 0.91075 0.83189 0.80410 1.90458 1.59902 1.43108 1.52873 1.20666 0.93080 1.01378 0.97797 1.20257 1.00429 0.97453 0.93070 1.21935 0.94444 0.91004 1.02026 1.22636 1.00218 1.02509 0.92341 1.23340 0.93007 0.90076 0.98974 1.66968 1.13969 1.06057 1.35141 1.21565 0.98121 0.89699 0.90198 1.98381 1.84325 1.22235 1.96606 1.22277 0.96545 0.98996 0.88568 1.23147 0.99826 0.96199 1.01777 1.23332 1.02227 0.98846 0.97358 0.92134 0.85151 0.86239 0.81712 0.79791 0.78478 0.82946 0.90908 0.85385 0.84631 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.16 13.96 21.66 0.30 -58.85 16 2 C 0.03 1.85 4.99 84.93 0.42 2.28 16 3 Si 0.99 52.62 24.33 68.60 1.67 54.29 16 4 H -0.28 -16.07 6.18 99.48 0.61 -15.45 16 5 H -0.32 -17.19 7.11 99.48 0.71 -16.49 16 6 H -0.26 -12.42 7.01 99.48 0.70 -11.73 16 7 C -0.33 -18.75 8.74 84.04 0.73 -18.02 16 8 H 0.07 4.19 7.03 -2.91 -0.02 4.17 16 9 N -0.45 -20.67 2.56 -613.12 -1.57 -22.24 16 10 C 0.45 20.25 5.56 87.66 0.49 20.74 16 11 O -0.58 -31.49 10.71 -3.08 -0.03 -31.52 16 12 C -0.09 -2.81 3.95 29.10 0.11 -2.69 16 13 C -0.11 -3.49 4.44 -19.75 -0.09 -3.58 16 14 C -0.07 -1.74 9.82 22.46 0.22 -1.52 16 15 C -0.16 -3.26 10.11 22.36 0.23 -3.03 16 16 C 0.10 2.45 11.18 84.67 0.95 3.40 16 17 N -0.51 -16.72 10.34 -186.69 -1.93 -18.65 16 18 C 0.17 5.89 7.16 84.70 0.61 6.50 16 19 Cl -0.04 -1.58 27.50 -2.72 -0.07 -1.65 16 20 C 0.04 1.32 5.84 45.00 0.26 1.59 16 21 C -0.17 -5.34 9.79 30.60 0.30 -5.04 16 22 C -0.18 -5.16 10.38 30.60 0.32 -4.84 16 23 H 0.27 16.53 8.31 -92.70 -0.77 15.76 16 24 H 0.13 3.17 8.00 -2.39 -0.02 3.15 16 25 H 0.12 3.25 6.79 -2.39 -0.02 3.24 16 26 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 27 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 28 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.15 3.72 7.01 -2.39 -0.02 3.71 16 30 H 0.07 2.86 6.52 -2.39 -0.02 2.84 16 31 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -81.45 293.92 3.95 -77.50 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.03 Total: 5.37 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 4.55 Total: -4.23 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -3.20 Total: -99.75 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.03 Total: -31.52 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 1.67 Total: 54.29 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.65 kcal Total: -81.45 3.95 -77.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864999411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.212 kcal (2) G-P(sol) polarization free energy of solvation -81.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds