Wall clock time and date at job start Tue Mar 31 2020 01:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.72850 * 2 1 4 4 C 1.54415 * 110.67266 * 123.10349 * 2 1 3 5 5 C 1.51751 * 103.73414 * 134.93010 * 4 2 1 6 6 N 1.31014 * 126.47297 * 182.07248 * 5 4 2 7 7 C 1.34774 * 120.00076 * 180.02562 * 6 5 4 8 8 O 1.21958 * 119.99727 * 0.02562 * 7 6 5 9 9 C 1.46435 * 120.00307 * 180.02562 * 7 6 5 10 10 S 1.75669 * 125.23053 * 359.97438 * 9 7 6 11 11 C 1.75465 * 92.09733 * 180.02562 * 10 9 7 12 12 C 1.32721 * 111.38358 * 359.74979 * 11 10 9 13 13 C 1.39601 * 125.23545 * 180.02562 * 9 7 6 14 14 C 1.40442 * 123.72571 * 359.96060 * 13 9 7 15 15 H 1.08003 * 120.00058 * 23.59794 * 14 13 9 16 16 C 1.40365 * 120.00063 * 203.59600 * 14 13 9 17 17 N 1.30615 * 120.00263 * 9.92670 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 189.93329 * 16 14 13 19 19 H 1.48503 * 109.46819 * 265.13416 * 18 16 14 20 20 H 1.48493 * 109.47407 * 145.13014 * 18 16 14 21 21 H 1.48503 * 109.46995 * 25.12479 * 18 16 14 22 22 N 1.36081 * 107.05058 * 2.34103 * 5 4 2 23 23 O 1.42133 * 109.52541 * 338.74707 * 22 5 4 24 24 H 1.09002 * 109.46818 * 296.89480 * 1 2 3 25 25 H 1.09000 * 109.47292 * 56.89075 * 1 2 3 26 26 H 1.08997 * 109.47007 * 176.89712 * 1 2 3 27 27 H 1.09002 * 110.57423 * 16.37137 * 4 2 1 28 28 H 1.09000 * 110.58055 * 253.49379 * 4 2 1 29 29 H 1.08002 * 124.30866 * 179.97438 * 11 10 9 30 30 H 1.08002 * 122.78155 * 180.25646 * 12 11 10 31 31 H 0.96997 * 119.99881 * 180.02562 * 17 16 14 32 32 H 0.96997 * 125.17819 * 158.89271 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0752 -0.7890 1.2102 5 6 3.1764 -1.6466 0.6147 6 7 3.9122 -2.5229 1.2528 7 6 4.8598 -3.2165 0.5914 8 8 5.0325 -3.0280 -0.6011 9 6 5.6819 -4.1963 1.3044 10 16 5.5514 -4.5757 3.0147 11 6 6.8443 -5.7579 2.9170 12 6 7.3224 -5.8513 1.6824 13 6 6.6904 -4.9719 0.7298 14 6 7.0465 -4.9071 -0.6271 15 1 6.8342 -4.0160 -1.1992 16 6 7.6784 -6.0005 -1.2399 17 7 7.7619 -7.1427 -0.6118 18 14 8.4003 -5.8221 -2.9535 19 1 7.4085 -6.2817 -3.9587 20 1 9.6314 -6.6455 -3.0603 21 1 8.7345 -4.3970 -3.2039 22 7 3.2593 -1.3292 -0.7059 23 8 2.0388 -0.7366 -1.1296 24 1 -0.3633 0.4649 0.9165 25 1 -0.3634 0.5613 -0.8608 26 1 -0.3633 -1.0261 -0.0556 27 1 1.2943 -1.4145 1.6429 28 1 2.4817 -0.1094 1.9591 29 1 7.2027 -6.3386 3.7541 30 1 8.1208 -6.5274 1.4141 31 1 8.1989 -7.8981 -1.0351 32 1 4.0321 -1.4858 -1.2709 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867062929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:32 Heat of formation + Delta-G solvation = 21.395913 kcal Electronic energy + Delta-G solvation = -19048.659937 eV Core-core repulsion = 15910.318684 eV Total energy + Delta-G solvation = -3138.341253 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08563 -38.09197 -36.07191 -33.91943 -33.08278 -32.75965 -30.35234 -28.90497 -27.69453 -26.32192 -22.92849 -21.82294 -21.10842 -19.62165 -18.74065 -17.31661 -17.08524 -16.24831 -15.77543 -15.40277 -15.03674 -14.52655 -13.91053 -13.72204 -13.27116 -12.91447 -12.80745 -12.59957 -12.40691 -12.28679 -11.93794 -11.72161 -11.46543 -11.27631 -11.11781 -10.91288 -10.41361 -10.18286 -10.10065 -9.82158 -9.56706 -9.05535 -8.26911 -8.16612 -7.45130 -7.08500 -7.02310 -4.51793 1.64661 2.43453 2.59587 2.94022 2.95883 3.03938 3.29482 3.71407 3.85811 3.92467 4.06976 4.22197 4.53851 4.62213 4.81084 4.96004 5.27496 5.35895 5.41163 5.62447 5.70631 5.83183 5.91840 6.14007 6.78286 6.97362 7.00406 7.19532 7.28058 7.50166 7.69320 7.90247 8.27496 8.38875 8.54427 8.66494 9.54023 9.81140 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.005467 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.329754 B = 5120.385857 C = 6475.741016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 H 0.085 0.915 4 C -0.111 4.111 5 C 0.432 3.568 6 N -0.588 5.588 7 C 0.551 3.449 8 O -0.579 6.579 9 C -0.393 4.393 10 S -0.002 6.002 11 C -0.216 4.216 12 C -0.108 4.108 13 C 0.131 3.869 14 C -0.369 4.369 15 H 0.110 0.890 16 C 0.066 3.934 17 N -0.770 5.770 18 Si 0.926 3.074 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.255 1.255 22 N -0.578 5.578 23 O -0.160 6.160 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.289 0.711 32 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.396 8.753 1.747 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.008 4.008 3 H 0.103 0.897 4 C -0.151 4.151 5 C 0.161 3.839 6 N -0.339 5.339 7 C 0.354 3.646 8 O -0.466 6.466 9 C -0.512 4.512 10 S 0.255 5.745 11 C -0.350 4.350 12 C -0.141 4.141 13 C 0.120 3.880 14 C -0.399 4.399 15 H 0.128 0.872 16 C -0.157 4.157 17 N -0.394 5.394 18 Si 0.750 3.250 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.178 1.178 22 N -0.278 5.278 23 O -0.165 6.165 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.100 0.900 32 H 0.313 0.687 Dipole moment (debyes) X Y Z Total from point charges -8.111 8.779 2.685 12.250 hybrid contribution 1.560 -0.614 -2.521 3.027 sum -6.551 8.164 0.164 10.469 Atomic orbital electron populations 1.21876 0.91742 1.03728 1.03133 1.23398 0.95987 0.95865 0.85600 0.89678 1.22186 0.96531 0.97772 0.98582 1.23637 0.91561 0.87510 0.81189 1.69626 1.15120 1.11527 1.37591 1.18189 0.80593 0.81280 0.84563 1.90407 1.70892 1.67588 1.17748 1.22367 1.13347 1.19992 0.95463 1.83056 1.39929 1.40772 1.10781 1.25187 1.03680 1.05502 1.00672 1.21621 1.01434 0.99861 0.91213 1.18045 0.88006 0.88370 0.93604 1.20076 1.24849 1.00404 0.94581 0.87178 1.26429 0.93380 0.94439 1.01457 1.69675 1.29825 1.01516 1.38369 0.85973 0.78708 0.80238 0.80125 1.18969 1.19729 1.17830 1.48473 1.08823 1.59653 1.10892 1.91146 1.26111 1.67576 1.31674 0.90163 0.91381 0.91161 0.87069 0.86918 0.84560 0.83945 0.89969 0.68734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.51 37.16 0.35 -0.78 16 2 C 0.05 0.54 4.37 -25.99 -0.11 0.43 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.33 6.63 -26.62 -0.18 -1.51 16 5 C 0.43 7.92 7.98 -153.51 -1.23 6.70 16 6 N -0.59 -13.26 10.25 -10.06 -0.10 -13.36 16 7 C 0.55 14.48 7.69 -12.96 -0.10 14.38 16 8 O -0.58 -15.64 11.89 4.96 0.06 -15.58 16 9 C -0.39 -10.67 6.52 -35.78 -0.23 -10.91 16 10 S 0.00 -0.04 22.98 -107.50 -2.47 -2.51 16 11 C -0.22 -4.93 11.06 28.85 0.32 -4.62 16 12 C -0.11 -2.73 9.05 -39.11 -0.35 -3.08 16 13 C 0.13 3.62 5.68 -106.21 -0.60 3.02 16 14 C -0.37 -10.07 8.52 -37.95 -0.32 -10.39 16 15 H 0.11 3.11 6.05 -52.48 -0.32 2.79 16 16 C 0.07 1.61 5.39 -17.27 -0.09 1.51 16 17 N -0.77 -18.78 10.81 55.57 0.60 -18.18 16 18 Si 0.93 18.54 29.57 -169.99 -5.03 13.51 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.25 -5.14 7.11 56.52 0.40 -4.74 16 22 N -0.58 -10.50 6.79 33.20 0.23 -10.27 16 23 O -0.16 -2.44 12.24 -11.73 -0.14 -2.58 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.11 1.18 7.81 -51.93 -0.41 0.78 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.14 2.62 8.06 -52.49 -0.42 2.20 16 30 H 0.14 3.53 6.39 -52.49 -0.34 3.19 16 31 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 32 H 0.45 8.98 6.56 -40.82 -0.27 8.71 16 LS Contribution 292.09 15.07 4.40 4.40 Total: -1.00 -31.34 292.09 -8.00 -39.35 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.00 Total: 10.50 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.55 Total: -5.26 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.72 Total: -41.82 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.08 Total: -18.17 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.34 -8.00 -39.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867062929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.743 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds