Wall clock time and date at job start Tue Mar 31 2020 01:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.72850 * 2 1 4 4 C 1.54415 * 110.67266 * 123.10349 * 2 1 3 5 5 C 1.51751 * 103.73414 * 134.93010 * 4 2 1 6 6 N 1.31014 * 126.47297 * 182.07248 * 5 4 2 7 7 C 1.34774 * 120.00076 * 180.02562 * 6 5 4 8 8 O 1.21958 * 119.99727 * 0.02562 * 7 6 5 9 9 C 1.46435 * 120.00307 * 180.02562 * 7 6 5 10 10 S 1.75669 * 125.23053 * 359.97438 * 9 7 6 11 11 C 1.75465 * 92.09733 * 180.02562 * 10 9 7 12 12 C 1.32721 * 111.38358 * 359.74979 * 11 10 9 13 13 C 1.39601 * 125.23545 * 180.02562 * 9 7 6 14 14 C 1.40442 * 123.72571 * 359.96060 * 13 9 7 15 15 H 1.08003 * 120.00058 * 23.59794 * 14 13 9 16 16 C 1.40365 * 120.00063 * 203.59600 * 14 13 9 17 17 N 1.30615 * 120.00263 * 9.92670 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 189.93329 * 16 14 13 19 19 H 1.48503 * 109.46819 * 265.13416 * 18 16 14 20 20 H 1.48493 * 109.47407 * 145.13014 * 18 16 14 21 21 H 1.48503 * 109.46995 * 25.12479 * 18 16 14 22 22 N 1.36081 * 107.05058 * 2.34103 * 5 4 2 23 23 O 1.42133 * 109.52541 * 338.74707 * 22 5 4 24 24 H 1.09002 * 109.46818 * 296.89480 * 1 2 3 25 25 H 1.09000 * 109.47292 * 56.89075 * 1 2 3 26 26 H 1.08997 * 109.47007 * 176.89712 * 1 2 3 27 27 H 1.09002 * 110.57423 * 16.37137 * 4 2 1 28 28 H 1.09000 * 110.58055 * 253.49379 * 4 2 1 29 29 H 1.08002 * 124.30866 * 179.97438 * 11 10 9 30 30 H 1.08002 * 122.78155 * 180.25646 * 12 11 10 31 31 H 0.96997 * 119.99881 * 180.02562 * 17 16 14 32 32 H 0.96997 * 125.17819 * 158.89271 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0752 -0.7890 1.2102 5 6 3.1764 -1.6466 0.6147 6 7 3.9122 -2.5229 1.2528 7 6 4.8598 -3.2165 0.5914 8 8 5.0325 -3.0280 -0.6011 9 6 5.6819 -4.1963 1.3044 10 16 5.5514 -4.5757 3.0147 11 6 6.8443 -5.7579 2.9170 12 6 7.3224 -5.8513 1.6824 13 6 6.6904 -4.9719 0.7298 14 6 7.0465 -4.9071 -0.6271 15 1 6.8342 -4.0160 -1.1992 16 6 7.6784 -6.0005 -1.2399 17 7 7.7619 -7.1427 -0.6118 18 14 8.4003 -5.8221 -2.9535 19 1 7.4085 -6.2817 -3.9587 20 1 9.6314 -6.6455 -3.0603 21 1 8.7345 -4.3970 -3.2039 22 7 3.2593 -1.3292 -0.7059 23 8 2.0388 -0.7366 -1.1296 24 1 -0.3633 0.4649 0.9165 25 1 -0.3634 0.5613 -0.8608 26 1 -0.3633 -1.0261 -0.0556 27 1 1.2943 -1.4145 1.6429 28 1 2.4817 -0.1094 1.9591 29 1 7.2027 -6.3386 3.7541 30 1 8.1208 -6.5274 1.4141 31 1 8.1989 -7.8981 -1.0351 32 1 4.0321 -1.4858 -1.2709 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867062929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:32 Heat of formation + Delta-G solvation = -0.095322 kcal Electronic energy + Delta-G solvation = -19049.591867 eV Core-core repulsion = 15910.318684 eV Total energy + Delta-G solvation = -3139.273183 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45546 -39.79099 -37.92794 -35.50538 -34.96140 -33.76992 -31.89256 -30.76698 -28.68182 -28.15707 -24.65738 -23.09605 -22.51155 -21.17497 -20.63349 -18.92398 -18.53148 -18.00936 -17.20527 -17.04467 -16.57401 -15.94705 -15.54135 -15.44305 -14.62683 -14.31577 -14.17317 -13.99683 -13.79473 -13.67932 -13.24333 -13.07336 -12.94966 -12.87367 -12.71160 -12.15236 -12.09820 -12.04926 -11.64114 -11.35558 -11.25420 -10.93218 -10.11781 -9.76382 -9.34546 -8.93629 -8.89997 -6.48810 -0.06419 0.74432 1.23275 1.29785 1.31924 1.44700 1.46573 1.91910 2.01614 2.13912 2.77789 2.78780 3.16313 3.32086 3.59951 3.94111 4.07130 4.24678 4.41292 4.64755 4.69752 4.92760 4.95622 5.00028 5.21881 5.25620 5.29124 5.43604 5.54093 5.61448 5.85132 6.19567 6.38569 6.56384 6.67497 6.74205 7.71427 8.01369 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.005467 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.329754 B = 5120.385857 C = 6475.741016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 H 0.110 0.890 4 C -0.103 4.103 5 C 0.432 3.568 6 N -0.619 5.619 7 C 0.541 3.459 8 O -0.608 6.608 9 C -0.441 4.441 10 S 0.032 5.968 11 C -0.200 4.200 12 C -0.135 4.135 13 C 0.104 3.896 14 C -0.407 4.407 15 H 0.086 0.914 16 C 0.033 3.967 17 N -0.786 5.786 18 Si 0.994 3.006 19 H -0.264 1.264 20 H -0.245 1.245 21 H -0.264 1.264 22 N -0.586 5.586 23 O -0.169 6.169 24 H 0.113 0.887 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.132 0.868 28 H 0.144 0.856 29 H 0.177 0.823 30 H 0.142 0.858 31 H 0.303 0.697 32 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 9.614 2.390 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.011 4.011 3 H 0.127 0.873 4 C -0.142 4.142 5 C 0.163 3.837 6 N -0.372 5.372 7 C 0.343 3.657 8 O -0.497 6.497 9 C -0.559 4.559 10 S 0.289 5.711 11 C -0.334 4.334 12 C -0.167 4.167 13 C 0.092 3.908 14 C -0.438 4.438 15 H 0.104 0.896 16 C -0.188 4.188 17 N -0.411 5.411 18 Si 0.813 3.187 19 H -0.188 1.188 20 H -0.169 1.169 21 H -0.188 1.188 22 N -0.280 5.280 23 O -0.174 6.174 24 H 0.131 0.869 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.195 0.805 30 H 0.160 0.840 31 H 0.115 0.885 32 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -9.351 9.670 3.348 13.862 hybrid contribution 1.727 -0.719 -2.695 3.281 sum -7.624 8.951 0.653 11.776 Atomic orbital electron populations 1.21939 0.89017 1.03730 1.05257 1.23894 0.97932 0.96152 0.83147 0.87266 1.22475 0.94782 0.97439 0.99484 1.24680 0.91279 0.86116 0.81631 1.69607 1.16223 1.13911 1.37459 1.18546 0.81226 0.81467 0.84415 1.90375 1.71889 1.68626 1.18769 1.22902 1.14107 1.21028 0.97874 1.82685 1.39756 1.40444 1.08220 1.25638 1.02311 1.04473 1.00996 1.21564 1.02481 1.00885 0.91804 1.18507 0.88529 0.89291 0.94466 1.20087 1.27623 1.01008 0.95045 0.89595 1.27157 0.93057 0.93472 1.05087 1.69648 1.29510 1.01980 1.39920 0.85012 0.78737 0.79916 0.75002 1.18836 1.16856 1.18796 1.48516 1.09658 1.58826 1.10966 1.91155 1.24290 1.68225 1.33760 0.86897 0.90552 0.92085 0.85047 0.83830 0.80540 0.84032 0.88525 0.70057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.51 71.98 0.68 -0.97 16 2 C 0.05 0.84 4.37 31.08 0.14 0.98 16 3 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.10 -2.16 6.63 30.66 0.20 -1.95 16 5 C 0.43 15.67 7.98 137.98 1.10 16.77 16 6 N -0.62 -28.39 10.25 -303.85 -3.11 -31.50 16 7 C 0.54 29.71 7.69 86.38 0.66 30.38 16 8 O -0.61 -34.81 11.89 -5.18 -0.06 -34.87 16 9 C -0.44 -24.85 6.52 24.74 0.16 -24.68 16 10 S 0.03 1.51 22.98 -56.49 -1.30 0.22 16 11 C -0.20 -8.98 11.06 66.65 0.74 -8.24 16 12 C -0.13 -6.90 9.05 22.62 0.20 -6.70 16 13 C 0.10 5.97 5.68 -20.89 -0.12 5.85 16 14 C -0.41 -23.44 8.52 23.32 0.20 -23.24 16 15 H 0.09 5.22 6.05 -2.91 -0.02 5.20 16 16 C 0.03 1.66 5.39 85.39 0.46 2.12 16 17 N -0.79 -38.85 10.81 21.90 0.24 -38.61 16 18 Si 0.99 38.61 29.57 68.60 2.03 40.64 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.25 -8.39 7.11 99.48 0.71 -7.69 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 22 N -0.59 -21.41 6.79 -48.86 -0.33 -21.74 16 23 O -0.17 -4.92 12.24 -39.99 -0.49 -5.41 16 24 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.13 2.33 7.81 -2.39 -0.02 2.31 16 28 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.18 6.33 8.06 -2.91 -0.02 6.31 16 30 H 0.14 7.15 6.39 -2.91 -0.02 7.13 16 31 H 0.30 13.04 8.29 -92.71 -0.77 12.28 16 32 H 0.44 18.34 6.56 -92.71 -0.61 17.73 16 Total: -1.00 -72.91 292.09 1.97 -70.94 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.57 Total: 30.03 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 4.43 Total: -9.68 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -3.21 Total: -91.86 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.55 Total: -40.28 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.30 Total: 0.22 kcal Total: -72.91 1.97 -70.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867062929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.842 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds