Wall clock time and date at job start Tue Mar 31 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46218 * 124.85369 * 2 1 4 4 N 1.46799 * 108.05345 * 180.02562 * 3 2 1 5 5 C 1.34782 * 127.02948 * 180.02562 * 4 3 2 6 6 O 1.21760 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.46239 * 119.99687 * 180.02562 * 5 4 3 8 8 S 1.75660 * 125.23133 * 359.68721 * 7 5 4 9 9 C 1.75466 * 92.09327 * 180.27249 * 8 7 5 10 10 C 1.32763 * 111.36687 * 0.02562 * 9 8 7 11 11 C 1.39545 * 125.22466 * 180.02562 * 7 5 4 12 12 C 1.40542 * 123.71461 * 359.73007 * 11 7 5 13 13 H 1.07995 * 119.99917 * 336.49795 * 12 11 7 14 14 C 1.40308 * 119.99755 * 156.50147 * 12 11 7 15 15 N 1.30641 * 120.00375 * 350.11869 * 14 12 11 16 16 Si 1.86805 * 119.99652 * 170.12301 * 14 12 11 17 17 H 1.48501 * 109.47078 * 94.81205 * 16 14 12 18 18 H 1.48504 * 109.47016 * 214.80764 * 16 14 12 19 19 H 1.48497 * 109.47267 * 334.80794 * 16 14 12 20 20 C 1.46983 * 105.93815 * 0.26374 * 4 3 2 21 21 C 1.34303 * 124.85227 * 180.02562 * 2 1 3 22 22 O 1.21281 * 125.42456 * 359.95736 * 21 2 1 23 23 H 1.08996 * 109.47151 * 89.99419 * 1 2 3 24 24 H 1.08997 * 109.47308 * 209.99873 * 1 2 3 25 25 H 1.08995 * 109.46977 * 329.99801 * 1 2 3 26 26 H 1.09004 * 109.75158 * 60.36770 * 3 2 1 27 27 H 1.08999 * 109.75577 * 299.67870 * 3 2 1 28 28 H 1.08004 * 124.32177 * 179.97438 * 9 8 7 29 29 H 1.08003 * 122.79072 * 180.02562 * 10 9 8 30 30 H 0.97003 * 119.99909 * 180.02562 * 15 14 12 31 31 H 1.09003 * 110.04017 * 119.01360 * 20 4 3 32 32 H 1.09006 * 110.03865 * 240.45705 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.1999 0.0000 4 7 3.7060 0.7756 -0.0006 5 6 4.7941 1.5711 -0.0003 6 8 4.6632 2.7816 0.0010 7 6 6.1317 0.9801 -0.0016 8 16 6.4789 -0.7418 0.0042 9 6 8.2105 -0.4581 0.0068 10 6 8.4879 0.8403 0.0040 11 6 7.3286 1.6977 -0.0010 12 6 7.3966 3.1014 -0.0045 13 1 6.5668 3.6813 -0.3807 14 6 8.5425 3.7494 0.4808 15 7 9.4617 3.0671 1.1103 16 14 8.7539 5.5880 0.2267 17 1 8.2635 6.3131 1.4263 18 1 10.1910 5.8965 0.0151 19 1 7.9753 6.0161 -0.9631 20 6 3.6839 -0.6941 -0.0075 21 6 2.2326 -1.1021 -0.0005 22 8 1.8233 -2.2438 -0.0003 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 2.0949 1.7921 0.8917 27 1 2.0944 1.7925 -0.8913 28 1 8.9557 -1.2398 0.0110 29 1 9.4980 1.2225 0.0045 30 1 10.2538 3.5153 1.4461 31 1 4.1758 -1.0708 -0.9043 32 1 4.1823 -1.0793 0.8821 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867224419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:45 Heat of formation + Delta-G solvation = -23.614002 kcal Electronic energy + Delta-G solvation = -19347.386626 eV Core-core repulsion = 16207.093597 eV Total energy + Delta-G solvation = -3140.293029 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55091 -38.14040 -36.50812 -35.74822 -33.70618 -33.15369 -29.23871 -28.63867 -27.71287 -26.08837 -24.17584 -22.06767 -20.36994 -19.71447 -18.77162 -17.44139 -16.62266 -16.35756 -15.59041 -15.56253 -15.40765 -14.57549 -14.20143 -14.08717 -13.69513 -13.64213 -13.07881 -12.64149 -12.51253 -12.40977 -12.16525 -12.00572 -11.75462 -11.50580 -11.19519 -11.06401 -10.48770 -10.25619 -10.05014 -9.64518 -9.24319 -9.06308 -8.71019 -8.15510 -7.58854 -7.20958 -7.14625 -4.63802 2.06542 2.52803 2.75266 2.90406 2.94061 3.02056 3.06631 3.48857 3.56371 3.69525 3.77527 4.20925 4.43256 4.98264 5.13648 5.23762 5.35773 5.54947 5.57070 5.64627 5.70415 5.86243 6.04293 6.30111 6.63823 6.75245 7.06049 7.08729 7.15764 7.39961 7.59874 8.07414 8.11555 8.27191 8.47945 8.61122 9.28200 9.75606 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.005556 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.366318 B = 5038.732078 C = 6105.916094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.632 5.632 3 C 0.342 3.658 4 N -0.642 5.642 5 C 0.629 3.371 6 O -0.551 6.551 7 C -0.432 4.432 8 S -0.039 6.039 9 C -0.212 4.212 10 C -0.101 4.101 11 C 0.144 3.856 12 C -0.372 4.372 13 H 0.112 0.888 14 C 0.067 3.933 15 N -0.771 5.771 16 Si 0.927 3.073 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.254 1.254 20 C 0.073 3.927 21 C 0.522 3.478 22 O -0.525 6.525 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.290 0.710 31 H 0.110 0.890 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 -1.887 -1.214 7.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.369 5.369 3 C 0.133 3.867 4 N -0.383 5.383 5 C 0.430 3.570 6 O -0.433 6.433 7 C -0.551 4.551 8 S 0.217 5.783 9 C -0.345 4.345 10 C -0.132 4.132 11 C 0.133 3.867 12 C -0.402 4.402 13 H 0.130 0.870 14 C -0.156 4.156 15 N -0.395 5.395 16 Si 0.750 3.250 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.177 1.177 20 C -0.055 4.055 21 C 0.309 3.691 22 O -0.401 6.401 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.162 0.838 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.747 -3.025 -1.085 8.387 hybrid contribution 1.133 1.794 0.075 2.124 sum -6.613 -1.231 -1.010 6.802 Atomic orbital electron populations 1.21500 0.76676 1.03382 1.02148 1.48325 1.07042 1.07637 1.73849 1.21062 0.78630 0.84903 1.02066 1.48123 1.04719 1.05603 1.79806 1.16415 0.80813 0.84503 0.75241 1.90697 1.85236 1.13268 1.54112 1.22312 0.93862 0.92443 1.46451 1.83004 1.01240 1.09126 1.84962 1.25182 0.98689 0.99764 1.10899 1.21685 1.00593 0.91505 0.99463 1.17899 0.88196 0.93549 0.87085 1.20085 1.00278 0.91503 1.28359 0.86999 1.26416 0.94193 1.02646 0.92323 1.69674 1.07502 1.39232 1.23098 0.85965 0.78397 0.80036 0.80640 1.18909 1.19776 1.17718 1.21780 0.94261 0.83392 1.06096 1.20715 0.88681 0.84719 0.74935 1.90731 1.78845 1.19791 1.50724 0.92260 0.90389 0.90648 0.90926 0.90948 0.84545 0.83827 0.89900 0.87247 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 11.01 59.85 0.66 1.69 16 2 N -0.63 -8.88 3.33 -185.50 -0.62 -9.50 16 3 C 0.34 5.27 7.57 -63.73 -0.48 4.79 16 4 N -0.64 -12.33 3.36 -179.95 -0.60 -12.93 16 5 C 0.63 14.81 7.83 -13.04 -0.10 14.71 16 6 O -0.55 -14.27 14.85 5.14 0.08 -14.19 16 7 C -0.43 -10.53 6.45 -35.88 -0.23 -10.77 16 8 S -0.04 -0.80 18.73 -107.50 -2.01 -2.81 16 9 C -0.21 -4.47 11.07 28.86 0.32 -4.15 16 10 C -0.10 -2.36 9.04 -39.12 -0.35 -2.72 16 11 C 0.14 3.70 5.68 -106.21 -0.60 3.09 16 12 C -0.37 -9.60 8.51 -37.94 -0.32 -9.92 16 13 H 0.11 3.01 6.05 -52.49 -0.32 2.69 16 14 C 0.07 1.56 5.39 -17.28 -0.09 1.47 16 15 N -0.77 -17.93 10.82 55.57 0.60 -17.33 16 16 Si 0.93 17.72 29.57 -169.99 -5.03 12.69 16 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 19 H -0.25 -4.91 7.11 56.52 0.40 -4.51 16 20 C 0.07 1.26 5.26 -4.90 -0.03 1.23 16 21 C 0.52 8.64 8.13 -11.17 -0.09 8.55 16 22 O -0.52 -9.81 17.67 5.56 0.10 -9.71 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.78 7.98 -51.93 -0.41 0.37 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.14 2.45 8.06 -52.48 -0.42 2.03 16 29 H 0.14 3.36 6.40 -52.48 -0.34 3.02 16 30 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 31 H 0.11 1.91 7.04 -51.93 -0.37 1.54 16 32 H 0.11 1.94 6.98 -51.93 -0.36 1.58 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -29.23 288.97 -7.50 -36.74 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.04 Total: 4.72 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.33 Total: 7.98 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.62 Total: -39.76 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.01 Total: -2.81 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.23 -7.50 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867224419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.122 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds