Wall clock time and date at job start Tue Mar 31 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46218 * 124.85369 * 2 1 4 4 N 1.46799 * 108.05345 * 180.02562 * 3 2 1 5 5 C 1.34782 * 127.02948 * 180.02562 * 4 3 2 6 6 O 1.21760 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.46239 * 119.99687 * 180.02562 * 5 4 3 8 8 S 1.75660 * 125.23133 * 359.68721 * 7 5 4 9 9 C 1.75466 * 92.09327 * 180.27249 * 8 7 5 10 10 C 1.32763 * 111.36687 * 0.02562 * 9 8 7 11 11 C 1.39545 * 125.22466 * 180.02562 * 7 5 4 12 12 C 1.40542 * 123.71461 * 359.73007 * 11 7 5 13 13 H 1.07995 * 119.99917 * 336.49795 * 12 11 7 14 14 C 1.40308 * 119.99755 * 156.50147 * 12 11 7 15 15 N 1.30641 * 120.00375 * 350.11869 * 14 12 11 16 16 Si 1.86805 * 119.99652 * 170.12301 * 14 12 11 17 17 H 1.48501 * 109.47078 * 94.81205 * 16 14 12 18 18 H 1.48504 * 109.47016 * 214.80764 * 16 14 12 19 19 H 1.48497 * 109.47267 * 334.80794 * 16 14 12 20 20 C 1.46983 * 105.93815 * 0.26374 * 4 3 2 21 21 C 1.34303 * 124.85227 * 180.02562 * 2 1 3 22 22 O 1.21281 * 125.42456 * 359.95736 * 21 2 1 23 23 H 1.08996 * 109.47151 * 89.99419 * 1 2 3 24 24 H 1.08997 * 109.47308 * 209.99873 * 1 2 3 25 25 H 1.08995 * 109.46977 * 329.99801 * 1 2 3 26 26 H 1.09004 * 109.75158 * 60.36770 * 3 2 1 27 27 H 1.08999 * 109.75577 * 299.67870 * 3 2 1 28 28 H 1.08004 * 124.32177 * 179.97438 * 9 8 7 29 29 H 1.08003 * 122.79072 * 180.02562 * 10 9 8 30 30 H 0.97003 * 119.99909 * 180.02562 * 15 14 12 31 31 H 1.09003 * 110.04017 * 119.01360 * 20 4 3 32 32 H 1.09006 * 110.03865 * 240.45705 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.1999 0.0000 4 7 3.7060 0.7756 -0.0006 5 6 4.7941 1.5711 -0.0003 6 8 4.6632 2.7816 0.0010 7 6 6.1317 0.9801 -0.0016 8 16 6.4789 -0.7418 0.0042 9 6 8.2105 -0.4581 0.0068 10 6 8.4879 0.8403 0.0040 11 6 7.3286 1.6977 -0.0010 12 6 7.3966 3.1014 -0.0045 13 1 6.5668 3.6813 -0.3807 14 6 8.5425 3.7494 0.4808 15 7 9.4617 3.0671 1.1103 16 14 8.7539 5.5880 0.2267 17 1 8.2635 6.3131 1.4263 18 1 10.1910 5.8965 0.0151 19 1 7.9753 6.0161 -0.9631 20 6 3.6839 -0.6941 -0.0075 21 6 2.2326 -1.1021 -0.0005 22 8 1.8233 -2.2438 -0.0003 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 2.0949 1.7921 0.8917 27 1 2.0944 1.7925 -0.8913 28 1 8.9557 -1.2398 0.0110 29 1 9.4980 1.2225 0.0045 30 1 10.2538 3.5153 1.4461 31 1 4.1758 -1.0708 -0.9043 32 1 4.1823 -1.0793 0.8821 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867224419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:45 Heat of formation + Delta-G solvation = -41.984690 kcal Electronic energy + Delta-G solvation = -19348.183239 eV Core-core repulsion = 16207.093597 eV Total energy + Delta-G solvation = -3141.089642 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92118 -39.82336 -38.09906 -37.38285 -35.09456 -34.92089 -30.96302 -30.02803 -29.12668 -27.60237 -25.59449 -23.76066 -21.90084 -21.16906 -20.53965 -19.02815 -18.03080 -17.94434 -17.17225 -17.05101 -16.83279 -16.10901 -15.70320 -15.65435 -15.29593 -14.88268 -14.51528 -14.19334 -14.06320 -13.72305 -13.45872 -13.45245 -13.23777 -13.14839 -12.91001 -12.73950 -12.07308 -12.01676 -11.57114 -11.27055 -10.90910 -10.55148 -10.36145 -9.64249 -9.34915 -8.95012 -8.87704 -6.47603 0.28629 1.20614 1.35344 1.35965 1.37795 1.51344 1.53910 1.76936 1.94399 2.04111 2.17731 2.42221 3.10690 3.28878 3.79164 4.16446 4.21340 4.31076 4.34290 4.42919 4.50166 4.61270 4.82510 4.95004 5.05946 5.21108 5.26797 5.40668 5.58962 5.77457 5.83125 6.31786 6.47752 6.63659 6.78258 6.80518 7.49620 8.05384 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.005556 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.366318 B = 5038.732078 C = 6105.916094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.621 5.621 3 C 0.341 3.659 4 N -0.643 5.643 5 C 0.625 3.375 6 O -0.585 6.585 7 C -0.467 4.467 8 S 0.014 5.986 9 C -0.201 4.201 10 C -0.128 4.128 11 C 0.116 3.884 12 C -0.409 4.409 13 H 0.089 0.911 14 C 0.036 3.964 15 N -0.789 5.789 16 Si 0.991 3.009 17 H -0.263 1.263 18 H -0.251 1.251 19 H -0.263 1.263 20 C 0.073 3.927 21 C 0.526 3.474 22 O -0.547 6.547 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.172 0.828 29 H 0.140 0.860 30 H 0.302 0.698 31 H 0.109 0.891 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 -2.189 -1.146 7.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.355 5.355 3 C 0.133 3.867 4 N -0.382 5.382 5 C 0.425 3.575 6 O -0.469 6.469 7 C -0.585 4.585 8 S 0.270 5.730 9 C -0.335 4.335 10 C -0.160 4.160 11 C 0.105 3.895 12 C -0.439 4.439 13 H 0.107 0.893 14 C -0.185 4.185 15 N -0.413 5.413 16 Si 0.810 3.190 17 H -0.188 1.188 18 H -0.174 1.174 19 H -0.187 1.187 20 C -0.054 4.054 21 C 0.313 3.687 22 O -0.425 6.425 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.190 0.810 29 H 0.157 0.843 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.399 -3.365 -1.013 9.105 hybrid contribution 1.215 1.778 0.064 2.154 sum -7.184 -1.587 -0.949 7.418 Atomic orbital electron populations 1.21854 0.73769 1.04893 1.03725 1.48408 1.08510 1.06160 1.72472 1.21233 0.76727 0.85487 1.03263 1.47877 1.05598 1.06286 1.78428 1.16400 0.81670 0.84338 0.75074 1.90661 1.86021 1.14683 1.55555 1.22778 0.94332 0.94967 1.46422 1.82691 1.00417 1.05910 1.83974 1.25660 1.00023 0.99821 1.08000 1.21593 0.99900 0.92245 1.02297 1.18334 0.89548 0.94234 0.87396 1.20095 1.01107 0.92007 1.30700 0.89279 1.27089 0.93301 1.06568 0.91551 1.69657 1.07905 1.40909 1.22796 0.85047 0.79255 0.74717 0.79950 1.18758 1.17406 1.18661 1.21794 0.95555 0.82158 1.05928 1.20398 0.88340 0.84855 0.75116 1.90727 1.78941 1.20605 1.52238 0.90641 0.90270 0.87786 0.89770 0.89691 0.81034 0.84279 0.88640 0.87313 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 11.01 127.77 1.41 3.03 16 2 N -0.62 -16.03 3.33 -859.44 -2.86 -18.89 16 3 C 0.34 9.96 7.57 170.95 1.29 11.25 16 4 N -0.64 -24.39 3.36 -841.41 -2.83 -27.22 16 5 C 0.62 29.90 7.83 86.32 0.68 30.58 16 6 O -0.58 -31.19 14.85 -4.54 -0.07 -31.25 16 7 C -0.47 -23.10 6.45 24.67 0.16 -22.94 16 8 S 0.01 0.57 18.73 -56.49 -1.06 -0.49 16 9 C -0.20 -8.25 11.07 66.64 0.74 -7.51 16 10 C -0.13 -6.08 9.04 22.61 0.20 -5.88 16 11 C 0.12 6.13 5.68 -20.89 -0.12 6.01 16 12 C -0.41 -21.93 8.51 23.34 0.20 -21.73 16 13 H 0.09 5.07 6.05 -2.91 -0.02 5.05 16 14 C 0.04 1.69 5.39 85.37 0.46 2.16 16 15 N -0.79 -36.94 10.82 21.89 0.24 -36.71 16 16 Si 0.99 36.55 29.57 68.60 2.03 38.58 16 17 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 18 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 C 0.07 2.48 5.26 85.56 0.45 2.93 16 21 C 0.53 16.58 8.13 87.75 0.71 17.29 16 22 O -0.55 -19.64 17.67 -3.03 -0.05 -19.69 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.37 7.98 -2.39 -0.02 1.35 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.17 5.68 8.06 -2.91 -0.02 5.66 16 29 H 0.14 6.60 6.40 -2.91 -0.02 6.59 16 30 H 0.30 12.40 8.29 -92.71 -0.77 11.63 16 31 H 0.11 3.69 7.04 -2.39 -0.02 3.68 16 32 H 0.11 3.68 6.98 -2.38 -0.02 3.66 16 Total: -1.00 -64.42 288.97 2.74 -61.68 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.16 Total: 18.80 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.18 Total: 15.20 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -5.45 Total: -82.82 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.12 Total: -50.94 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -1.06 Total: -0.49 kcal Total: -64.42 2.74 -61.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867224419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.693 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds